RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 PKHD1P08F94 4074 aa9.84□□□□□ -0.83
COL9A1-204ENST00000370496 TRAV8-4A0A0B4J246 113 aa9.84□□□□□ -0.83
COL9A1-204ENST00000370496 PRSS47A8MTI9 375 aa9.84□□□□□ -0.83
COL9A1-204ENST00000370496 KRTAP10-2P60368 255 aa9.84□□□□□ -0.83
COL9A1-204ENST00000370496 Q8N8P6 123 aa9.84□□□□□ -0.83
COL9A1-204ENST00000370496 BAALCQ8WXS3 180 aa9.84□□□□□ -0.83
COL9A1-204ENST00000370496 NXT2Q9NPJ8 142 aaKnown RBP9.84□□□□□ -0.83
COL9A1-204ENST00000370496 UBE2D4Q9Y2X8 147 aa9.84□□□□□ -0.83
COL9A1-204ENST00000370496 RPL39P62891 51 aaKnown RBP9.83□□□□□ -0.84
COL9A1-204ENST00000370496 WFDC2Q14508 124 aa9.83□□□□□ -0.84
COL9A1-204ENST00000370496 Q8N814 137 aa9.83□□□□□ -0.84
COL9A1-204ENST00000370496 MAPKAPK5-AS1Q8N8E1 139 aa9.83□□□□□ -0.84
COL9A1-204ENST00000370496 SMCO4Q9NRQ5 59 aa9.83□□□□□ -0.84
COL9A1-204ENST00000370496 TRAPPC1Q9Y5R8 145 aa9.83□□□□□ -0.84
COL9A1-204ENST00000370496 CDPF1Q6NVV7 123 aa9.82□□□□□ -0.84
COL9A1-204ENST00000370496 SPANXA1Q9NS26 97 aa9.82□□□□□ -0.84
COL9A1-204ENST00000370496 FUSP35637 526 aaKnown RBP eCLIP9.81□□□□□ -0.84
COL9A1-204ENST00000370496 IFI27P40305 119 aaPredicted RBP9.81□□□□□ -0.84
COL9A1-204ENST00000370496 ORMDL2Q53FV1 153 aa9.81□□□□□ -0.84
COL9A1-204ENST00000370496 Q6ZUT4 128 aa9.81□□□□□ -0.84
COL9A1-204ENST00000370496 ZNF664Q8N3J9 261 aa9.81□□□□□ -0.84
COL9A1-204ENST00000370496 ALKBH7Q9BT30 221 aaPredicted RBP9.81□□□□□ -0.84
COL9A1-204ENST00000370496 TIMM21Q9BVV7 248 aa9.81□□□□□ -0.84
COL9A1-204ENST00000370496 CDC42SE2Q9NRR3 84 aa9.81□□□□□ -0.84
COL9A1-204ENST00000370496 CSDC2Q9Y534 153 aaKnown RBP9.81□□□□□ -0.84
COL9A1-204ENST00000370496 K7EMI3 77 aa9.8□□□□□ -0.84
COL9A1-204ENST00000370496 RNASE13Q5GAN3 156 aaKnown RBP9.8□□□□□ -0.84
COL9A1-204ENST00000370496 PRSS3P2Q8NHM4 247 aa9.8□□□□□ -0.84
COL9A1-204ENST00000370496 CHCHD10Q8WYQ3 142 aaPredicted RBP9.8□□□□□ -0.84
COL9A1-204ENST00000370496 YPEL4Q96NS1 127 aa9.8□□□□□ -0.84
COL9A1-204ENST00000370496 PGPEP1Q9NXJ5 209 aa9.8□□□□□ -0.84
COL9A1-204ENST00000370496 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.79□□□□□ -0.84
COL9A1-204ENST00000370496 IGLV5-52A0A0A0MRZ9 124 aa9.79□□□□□ -0.84
COL9A1-204ENST00000370496 C14orf177Q52M58 125 aa9.79□□□□□ -0.84
COL9A1-204ENST00000370496 NTN5Q8WTR8 489 aaPredicted RBP9.79□□□□□ -0.84
COL9A1-204ENST00000370496 CYSLTR1Q9Y271 337 aa9.79□□□□□ -0.84
COL9A1-204ENST00000370496 DNAH11Q96DT5 4516 aa9.79□□□□□ -0.84
COL9A1-204ENST00000370496 GAGE12HA6NDE8 117 aa9.78□□□□□ -0.84
COL9A1-204ENST00000370496 USP17L23D6RBM5 183 aa9.78□□□□□ -0.84
COL9A1-204ENST00000370496 SS18Q15532 418 aa9.78□□□□□ -0.84
COL9A1-204ENST00000370496 KRTAP26-1Q6PEX3 210 aa9.78□□□□□ -0.84
COL9A1-204ENST00000370496 BIRC6Q9NR09 4857 aa9.78□□□□□ -0.84
COL9A1-204ENST00000370496 LINC00959A0A1B0GUT2 108 aa9.77□□□□□ -0.84
COL9A1-204ENST00000370496 XCL1P47992 114 aa9.77□□□□□ -0.84
COL9A1-204ENST00000370496 C2orf66Q6UXQ4 117 aa9.77□□□□□ -0.84
COL9A1-204ENST00000370496 FA2HQ7L5A8 372 aa9.77□□□□□ -0.84
COL9A1-204ENST00000370496 CCL25O15444 150 aa9.76□□□□□ -0.85
COL9A1-204ENST00000370496 TRAV13-1A0A0B4J241 112 aa9.75□□□□□ -0.85
COL9A1-204ENST00000370496 G0S2P27469 103 aa9.75□□□□□ -0.85
COL9A1-204ENST00000370496 MRPS36P82909 103 aaKnown RBP9.75□□□□□ -0.85
COL9A1-204ENST00000370496 IFITM10A6NMD0 228 aa9.75□□□□□ -0.85
COL9A1-204ENST00000370496 Q6ZN92 141 aa9.75□□□□□ -0.85
COL9A1-204ENST00000370496 OPRPNQ99935 248 aaPredicted RBP9.75□□□□□ -0.85
COL9A1-204ENST00000370496 PYGO1Q9Y3Y4 419 aa9.75□□□□□ -0.85
COL9A1-204ENST00000370496 IGLV4-3A0A075B6K6 122 aa9.74□□□□□ -0.85
COL9A1-204ENST00000370496 C1orf196B1AJZ1 125 aa9.74□□□□□ -0.85
COL9A1-204ENST00000370496 FOXI1Q12951 378 aa9.74□□□□□ -0.85
COL9A1-204ENST00000370496 C18orf32Q8TCD1 76 aa9.74□□□□□ -0.85
COL9A1-204ENST00000370496 TMEM141Q96I45 108 aa9.74□□□□□ -0.85
COL9A1-204ENST00000370496 hDV102S1A0JD36 115 aa9.73□□□□□ -0.85
COL9A1-204ENST00000370496 GCSHP23434 173 aa9.73□□□□□ -0.85
COL9A1-204ENST00000370496 AP5S1Q9NUS5 200 aa9.73□□□□□ -0.85
COL9A1-204ENST00000370496 CFAP161Q6P656 301 aa9.72□□□□□ -0.85
COL9A1-204ENST00000370496 CD164L2Q6UWJ8 174 aa9.72□□□□□ -0.85
COL9A1-204ENST00000370496 TEX43Q6ZNM6 134 aa9.72□□□□□ -0.85
COL9A1-204ENST00000370496 TOMM6Q96B49 74 aa9.72□□□□□ -0.85
COL9A1-204ENST00000370496 C2orf88Q9BSF0 95 aa9.72□□□□□ -0.85
COL9A1-204ENST00000370496 DYNC1H1Q14204 4646 aaKnown RBP9.71□□□□□ -0.86
COL9A1-204ENST00000370496 DNAH5Q8TE73 4624 aa9.71□□□□□ -0.86
COL9A1-204ENST00000370496 LINC01546A6NGU7 62 aa9.71□□□□□ -0.86
COL9A1-204ENST00000370496 PRSS1P07477 247 aa9.71□□□□□ -0.86
COL9A1-204ENST00000370496 FAM104AQ969W3 186 aa9.71□□□□□ -0.86
COL9A1-204ENST00000370496 LINC01549A6NIU2 74 aa9.7□□□□□ -0.86
COL9A1-204ENST00000370496 COX7A2LO14548 114 aa9.7□□□□□ -0.86
COL9A1-204ENST00000370496 SCO1O75880 301 aa9.7□□□□□ -0.86
COL9A1-204ENST00000370496 NPSP0C0P6 89 aa9.7□□□□□ -0.86
COL9A1-204ENST00000370496 MALP21145 153 aa9.7□□□□□ -0.86
COL9A1-204ENST00000370496 RAB5BP61020 215 aa9.7□□□□□ -0.86
COL9A1-204ENST00000370496 PAPPA-AS1Q5QFB9 102 aa9.7□□□□□ -0.86
COL9A1-204ENST00000370496 C15orf56Q8N910 161 aa9.7□□□□□ -0.86
COL9A1-204ENST00000370496 TIMM17AQ99595 171 aa9.7□□□□□ -0.86
COL9A1-204ENST00000370496 IGIPA6NJ69 53 aa9.69□□□□□ -0.86
COL9A1-204ENST00000370496 KRTAP10-1P60331 282 aa9.69□□□□□ -0.86
COL9A1-204ENST00000370496 HIGD2BQ4VC39 106 aa9.69□□□□□ -0.86
COL9A1-204ENST00000370496 SCGB3A1Q96QR1 104 aa9.69□□□□□ -0.86
COL9A1-204ENST00000370496 IGHV1-58A0A0C4DH39 117 aa9.68□□□□□ -0.86
COL9A1-204ENST00000370496 TRGC2P03986 189 aa9.68□□□□□ -0.86
COL9A1-204ENST00000370496 LINC00614P0C842 121 aa9.68□□□□□ -0.86
COL9A1-204ENST00000370496 ERASQ7Z444 233 aa9.68□□□□□ -0.86
COL9A1-204ENST00000370496 VCX2Q9H322 139 aa9.68□□□□□ -0.86
COL9A1-204ENST00000370496 GVQW2A0A096LPI5 108 aaPredicted RBP9.67□□□□□ -0.86
COL9A1-204ENST00000370496 COLCA2A8K830 154 aa9.67□□□□□ -0.86
COL9A1-204ENST00000370496 LINC01620Q4KN68 170 aa9.67□□□□□ -0.86
COL9A1-204ENST00000370496 URB1-AS1Q96HZ7 61 aa9.67□□□□□ -0.86
COL9A1-204ENST00000370496 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.66□□□□□ -0.86
COL9A1-204ENST00000370496 CDK2AP2O75956 126 aa9.66□□□□□ -0.86
COL9A1-204ENST00000370496 HBDP02042 147 aa9.66□□□□□ -0.86
COL9A1-204ENST00000370496 ZC2HC1BQ5TFG8 222 aa9.66□□□□□ -0.86
COL9A1-204ENST00000370496 LINC00173Q6ZV60 143 aa9.66□□□□□ -0.86
COL9A1-204ENST00000370496 C5orf38Q86SI9 138 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms