RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 LRRC75A-AS1Q8N1F1 130 aa5.37□□□□□ -1.55
VPS13A-202ENST00000357409 C11orf21Q9P2W6 132 aa5.37□□□□□ -1.55
VPS13A-202ENST00000357409 SMIM11BQ8TCY0 68 aa5.36□□□□□ -1.55
VPS13A-202ENST00000357409 EP300Q09472 2414 aaPredicted RBP5.36□□□□□ -1.55
VPS13A-202ENST00000357409 TEN1Q86WV5 123 aa5.36□□□□□ -1.55
VPS13A-202ENST00000357409 MYLKQ15746 1914 aa5.36□□□□□ -1.55
VPS13A-202ENST00000357409 H0YGX0 51 aa5.36□□□□□ -1.55
VPS13A-202ENST00000357409 KRTAP27-1Q3LI81 207 aa5.36□□□□□ -1.55
VPS13A-202ENST00000357409 NCOR1P1Q9H4R4 102 aa5.36□□□□□ -1.55
VPS13A-202ENST00000357409 MBD6Q96DN6 1003 aa5.36□□□□□ -1.55
VPS13A-202ENST00000357409 LENEPQ9Y5L5 61 aa5.36□□□□□ -1.55
VPS13A-202ENST00000357409 LYRM9A8MSI8 78 aa5.36□□□□□ -1.55
VPS13A-202ENST00000357409 TNRC6AQ8NDV7 1962 aaKnown RBP5.36□□□□□ -1.55
VPS13A-202ENST00000357409 CYSRT1A8MQ03 144 aa5.35□□□□□ -1.55
VPS13A-202ENST00000357409 LINC00694P0DN24 101 aa5.35□□□□□ -1.55
VPS13A-202ENST00000357409 IGHV6-1A0A0B4J1U7 121 aa5.35□□□□□ -1.55
VPS13A-202ENST00000357409 UFSP1Q6NVU6 142 aa5.35□□□□□ -1.55
VPS13A-202ENST00000357409 IGLC6P0CF74 106 aa5.35□□□□□ -1.55
VPS13A-202ENST00000357409 C20orf144Q9BQM9 153 aa5.35□□□□□ -1.55
VPS13A-202ENST00000357409 PYGO1Q9Y3Y4 419 aa5.35□□□□□ -1.55
VPS13A-202ENST00000357409 ABCA1O95477 2261 aa5.35□□□□□ -1.55
VPS13A-202ENST00000357409 FBXL19-AS1Q494R0 122 aa5.35□□□□□ -1.55
VPS13A-202ENST00000357409 ODF3BA8MYP8 253 aa5.34□□□□□ -1.55
VPS13A-202ENST00000357409 TAX1BP3O14907 124 aa5.34□□□□□ -1.55
VPS13A-202ENST00000357409 PSMG3-AS1Q96PY0 264 aa5.34□□□□□ -1.55
VPS13A-202ENST00000357409 KIF26AQ9ULI4 1882 aaPredicted RBP5.34□□□□□ -1.55
VPS13A-202ENST00000357409 TRBV6-5A0A0K0K1A5 114 aa5.34□□□□□ -1.55
VPS13A-202ENST00000357409 SERTAD4-AS1Q5TG53 156 aa5.34□□□□□ -1.55
VPS13A-202ENST00000357409 U3KQK5 164 aa5.34□□□□□ -1.55
VPS13A-202ENST00000357409 RNASE3P12724 160 aaKnown RBP5.34□□□□□ -1.55
VPS13A-202ENST00000357409 SBSPONQ8IVN8 264 aa5.34□□□□□ -1.55
VPS13A-202ENST00000357409 Q6ZSN1 163 aa5.34□□□□□ -1.56
VPS13A-202ENST00000357409 ZNF22P17026 224 aaPredicted RBP5.34□□□□□ -1.56
VPS13A-202ENST00000357409 SPACA4Q8TDM5 124 aa5.34□□□□□ -1.56
VPS13A-202ENST00000357409 PRLHP81277 87 aa5.33□□□□□ -1.56
VPS13A-202ENST00000357409 TMEM223A0PJW6 202 aa5.33□□□□□ -1.56
VPS13A-202ENST00000357409 TIMM17BO60830 172 aa5.33□□□□□ -1.56
VPS13A-202ENST00000357409 MIAQ16674 131 aa5.33□□□□□ -1.56
VPS13A-202ENST00000357409 ESRGQ1W209 222 aa5.33□□□□□ -1.56
VPS13A-202ENST00000357409 C1orf134Q5TEV5 83 aa5.33□□□□□ -1.56
VPS13A-202ENST00000357409 M0QY20 66 aa5.32□□□□□ -1.56
VPS13A-202ENST00000357409 RNF152Q8N8N0 203 aa5.32□□□□□ -1.56
VPS13A-202ENST00000357409 LINC00308Q8TCZ7 52 aa5.32□□□□□ -1.56
VPS13A-202ENST00000357409 C19orf71A6NCJ1 209 aa5.32□□□□□ -1.56
VPS13A-202ENST00000357409 SMR3BP02814 79 aaPredicted RBP5.32□□□□□ -1.56
VPS13A-202ENST00000357409 REV3LO60673 3130 aa5.32□□□□□ -1.56
VPS13A-202ENST00000357409 A0A1B0GXF2 115 aa5.32□□□□□ -1.56
VPS13A-202ENST00000357409 JMJD7-PLA2G4BH0Y9G9 81 aa5.32□□□□□ -1.56
VPS13A-202ENST00000357409 C14orf177Q52M58 125 aa5.32□□□□□ -1.56
VPS13A-202ENST00000357409 SOSTDC1Q6X4U4 206 aa5.32□□□□□ -1.56
VPS13A-202ENST00000357409 DOCK11Q5JSL3 2073 aa5.32□□□□□ -1.56
VPS13A-202ENST00000357409 PKDREJQ9NTG1 2253 aa5.32□□□□□ -1.56
VPS13A-202ENST00000357409 RNF185Q96GF1 192 aa5.32□□□□□ -1.56
VPS13A-202ENST00000357409 TANC2Q9HCD6 1990 aa5.32□□□□□ -1.56
VPS13A-202ENST00000357409 PRO3102Q9H379 93 aa5.32□□□□□ -1.56
VPS13A-202ENST00000357409 HEATR5AQ86XA9 2040 aa5.32□□□□□ -1.56
VPS13A-202ENST00000357409 DENND4AQ7Z401 1863 aa5.32□□□□□ -1.56
VPS13A-202ENST00000357409 SERP1Q9Y6X1 66 aa5.32□□□□□ -1.56
VPS13A-202ENST00000357409 TNCP24821 2201 aa5.32□□□□□ -1.56
VPS13A-202ENST00000357409 MRGPRG-AS1Q2M3A8 158 aa5.31□□□□□ -1.56
VPS13A-202ENST00000357409 LINC01545Q5VT33 79 aa5.31□□□□□ -1.56
VPS13A-202ENST00000357409 NLRC5Q86WI3 1866 aa5.31□□□□□ -1.56
VPS13A-202ENST00000357409 TRIAP1O43715 76 aa5.31□□□□□ -1.56
VPS13A-202ENST00000357409 Q8N3U1 123 aa5.31□□□□□ -1.56
VPS13A-202ENST00000357409 GPR179Q6PRD1 2367 aa5.31□□□□□ -1.56
VPS13A-202ENST00000357409 ROS1P08922 2347 aa5.31□□□□□ -1.56
VPS13A-202ENST00000357409 Q6ZSR3 168 aa5.31□□□□□ -1.56
VPS13A-202ENST00000357409 ZNF295-AS1Q8N0V1 137 aa5.31□□□□□ -1.56
VPS13A-202ENST00000357409 SPTA1P02549 2419 aa5.31□□□□□ -1.56
VPS13A-202ENST00000357409 NCOA6Q14686 2063 aaPredicted RBP5.31□□□□□ -1.56
VPS13A-202ENST00000357409 ODF3L2Q3SX64 289 aa5.3□□□□□ -1.56
VPS13A-202ENST00000357409 MT-ATP8P03928 68 aa5.3□□□□□ -1.56
VPS13A-202ENST00000357409 BEAN1Q3B7T3 259 aa5.3□□□□□ -1.56
VPS13A-202ENST00000357409 TRBV6-4A0A1B0GX49 114 aa5.3□□□□□ -1.56
VPS13A-202ENST00000357409 LELP1Q5T871 98 aa5.3□□□□□ -1.56
VPS13A-202ENST00000357409 IGLV8-61A0A075B6I0 122 aa5.3□□□□□ -1.56
VPS13A-202ENST00000357409 MRPS12O15235 138 aaKnown RBP5.3□□□□□ -1.56
VPS13A-202ENST00000357409 MED13Q9UHV7 2174 aa5.3□□□□□ -1.56
VPS13A-202ENST00000357409 LOC107984640A0A0U1RRK4 108 aa5.29□□□□□ -1.56
VPS13A-202ENST00000357409 MDFIQ99750 246 aa5.29□□□□□ -1.56
VPS13A-202ENST00000357409 KIR2DL5BQ8NHK3 375 aa5.29□□□□□ -1.56
VPS13A-202ENST00000357409 SMIM9A6NGZ8 99 aa5.29□□□□□ -1.56
VPS13A-202ENST00000357409 FSHBP01225 129 aa5.29□□□□□ -1.56
VPS13A-202ENST00000357409 LINC01547P58512 204 aaPredicted RBP5.29□□□□□ -1.56
VPS13A-202ENST00000357409 CRIP3Q6Q6R5 217 aa5.29□□□□□ -1.56
VPS13A-202ENST00000357409 LINC00208Q96KT6 92 aa5.29□□□□□ -1.56
VPS13A-202ENST00000357409 TSHBP01222 138 aa5.28□□□□□ -1.56
VPS13A-202ENST00000357409 PHF5AQ7RTV0 110 aaKnown RBP5.28□□□□□ -1.56
VPS13A-202ENST00000357409 Q8N9L7 120 aa5.28□□□□□ -1.56
VPS13A-202ENST00000357409 TSC2P49815 1807 aa5.28□□□□□ -1.56
VPS13A-202ENST00000357409 Q6ZRU5 148 aa5.28□□□□□ -1.56
VPS13A-202ENST00000357409 SPANXCQ9NY87 97 aa5.28□□□□□ -1.56
VPS13A-202ENST00000357409 FREM2Q5SZK8 3169 aa5.28□□□□□ -1.56
VPS13A-202ENST00000357409 CTRLP40313 264 aa5.28□□□□□ -1.56
VPS13A-202ENST00000357409 DENND4CQ5VZ89 1909 aa5.28□□□□□ -1.56
VPS13A-202ENST00000357409 C10orf25Q5T742 122 aa5.28□□□□□ -1.56
VPS13A-202ENST00000357409 MED13LQ71F56 2210 aa5.27□□□□□ -1.57
VPS13A-202ENST00000357409 A0A087WVE0 104 aa5.27□□□□□ -1.57
VPS13A-202ENST00000357409 WNK2Q9Y3S1 2297 aa5.27□□□□□ -1.57
VPS13A-202ENST00000357409 PRRC2AP48634 2157 aaKnown RBP5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 102.9 ms