RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 CEP350Q5VT06 3117 aa10.96□□□□□ -0.65
COL17A1-201ENST00000353479 USP9YO00507 2555 aaPredicted RBP10.96□□□□□ -0.65
COL17A1-201ENST00000353479 H0YGX0 51 aa10.96□□□□□ -0.66
COL17A1-201ENST00000353479 IGLV4-3A0A075B6K6 122 aa10.96□□□□□ -0.66
COL17A1-201ENST00000353479 H7C423 109 aa10.96□□□□□ -0.66
COL17A1-201ENST00000353479 CDKN2A-AS1Q9UH64 79 aa10.95□□□□□ -0.66
COL17A1-201ENST00000353479 LOC100131303A0A0U1RQF7 123 aa10.95□□□□□ -0.66
COL17A1-201ENST00000353479 MRPS12O15235 138 aaKnown RBP10.94□□□□□ -0.66
COL17A1-201ENST00000353479 SPATA12Q7Z6I5 190 aa10.94□□□□□ -0.66
COL17A1-201ENST00000353479 C15orf53Q8NAA6 179 aa10.94□□□□□ -0.66
COL17A1-201ENST00000353479 C16orf95Q9H693 158 aa10.94□□□□□ -0.66
COL17A1-201ENST00000353479 C9orf85Q96MD7 179 aa10.93□□□□□ -0.66
COL17A1-201ENST00000353479 U3KQK5 164 aa10.93□□□□□ -0.66
COL17A1-201ENST00000353479 C14orf177Q52M58 125 aa10.93□□□□□ -0.66
COL17A1-201ENST00000353479 KPRPQ5T749 579 aaPredicted RBP10.93□□□□□ -0.66
COL17A1-201ENST00000353479 IGLV1-51P01701 117 aa10.92□□□□□ -0.66
COL17A1-201ENST00000353479 hADV29S1A0JD25 119 aa10.92□□□□□ -0.66
COL17A1-201ENST00000353479 TRBV27A0A0K0K1C4 114 aa10.91□□□□□ -0.66
COL17A1-201ENST00000353479 A0A0J9YWU9 116 aa10.91□□□□□ -0.66
COL17A1-201ENST00000353479 A0A0J9YXY3 114 aa10.9□□□□□ -0.66
COL17A1-201ENST00000353479 DIRC1Q969H9 104 aa10.9□□□□□ -0.66
COL17A1-201ENST00000353479 ZNF22P17026 224 aaPredicted RBP10.9□□□□□ -0.66
COL17A1-201ENST00000353479 NANOS2P60321 138 aaKnown RBP10.9□□□□□ -0.66
COL17A1-201ENST00000353479 TRBV6-5A0A0K0K1A5 114 aa10.9□□□□□ -0.66
COL17A1-201ENST00000353479 UFSP1Q6NVU6 142 aa10.9□□□□□ -0.66
COL17A1-201ENST00000353479 NRACQ8N912 160 aa10.9□□□□□ -0.66
COL17A1-201ENST00000353479 LRRK2Q5S007 2527 aa10.9□□□□□ -0.67
COL17A1-201ENST00000353479 IGLV2-18A0A075B6J9 118 aa10.89□□□□□ -0.67
COL17A1-201ENST00000353479 LECT2O14960 151 aa10.89□□□□□ -0.67
COL17A1-201ENST00000353479 RBX1P62877 108 aa10.89□□□□□ -0.67
COL17A1-201ENST00000353479 TSHBP01222 138 aa10.89□□□□□ -0.67
COL17A1-201ENST00000353479 CLUHP3Q96NS8 147 aa10.89□□□□□ -0.67
COL17A1-201ENST00000353479 MIAQ16674 131 aa10.89□□□□□ -0.67
COL17A1-201ENST00000353479 SETD2Q9BYW2 2564 aaPredicted RBP10.89□□□□□ -0.67
COL17A1-201ENST00000353479 BRI3O95415 125 aa10.89□□□□□ -0.67
COL17A1-201ENST00000353479 ZNF580Q9UK33 172 aa10.89□□□□□ -0.67
COL17A1-201ENST00000353479 ANKRD29Q8N6D5 301 aa10.88□□□□□ -0.67
COL17A1-201ENST00000353479 CLEC2BQ92478 149 aa10.88□□□□□ -0.67
COL17A1-201ENST00000353479 RETNQ9HD89 108 aa10.88□□□□□ -0.67
COL17A1-201ENST00000353479 FASNP49327 2511 aaKnown RBP10.88□□□□□ -0.67
COL17A1-201ENST00000353479 GAS8-AS1O95177 125 aa10.88□□□□□ -0.67
COL17A1-201ENST00000353479 FUSP35637 526 aaKnown RBP eCLIP10.88□□□□□ -0.67
COL17A1-201ENST00000353479 YPEL4Q96NS1 127 aa10.88□□□□□ -0.67
COL17A1-201ENST00000353479 FN1P02751 2386 aaKnown RBP10.88□□□□□ -0.67
COL17A1-201ENST00000353479 TMEM223A0PJW6 202 aa10.87□□□□□ -0.67
COL17A1-201ENST00000353479 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.87□□□□□ -0.67
COL17A1-201ENST00000353479 PTPRBP23467 1997 aa10.87□□□□□ -0.67
COL17A1-201ENST00000353479 CRYBA4P53673 196 aa10.87□□□□□ -0.67
COL17A1-201ENST00000353479 MRGPRG-AS1Q2M3A8 158 aa10.87□□□□□ -0.67
COL17A1-201ENST00000353479 LINC01620Q4KN68 170 aa10.86□□□□□ -0.67
COL17A1-201ENST00000353479 PKD1L2Q7Z442 2459 aa10.86□□□□□ -0.67
COL17A1-201ENST00000353479 M0R2N4 97 aa10.85□□□□□ -0.67
COL17A1-201ENST00000353479 LELP1Q5T871 98 aa10.85□□□□□ -0.67
COL17A1-201ENST00000353479 PYGO1Q9Y3Y4 419 aa10.84□□□□□ -0.67
COL17A1-201ENST00000353479 SPANXCQ9NY87 97 aa10.84□□□□□ -0.67
COL17A1-201ENST00000353479 POLR2KP53803 58 aaKnown RBP10.83□□□□□ -0.67
COL17A1-201ENST00000353479 TAX1BP3O14907 124 aa10.83□□□□□ -0.68
COL17A1-201ENST00000353479 TRACP01848 142 aa10.83□□□□□ -0.68
COL17A1-201ENST00000353479 COX7BP24311 80 aa10.83□□□□□ -0.68
COL17A1-201ENST00000353479 XAGE1AQ9HD64 81 aa10.83□□□□□ -0.68
COL17A1-201ENST00000353479 NDUFS5O43920 106 aa10.82□□□□□ -0.68
COL17A1-201ENST00000353479 UBE2D4Q9Y2X8 147 aa10.82□□□□□ -0.68
COL17A1-201ENST00000353479 A8MZ25 164 aa10.82□□□□□ -0.68
COL17A1-201ENST00000353479 TP73-AS1Q9UF72 201 aa10.82□□□□□ -0.68
COL17A1-201ENST00000353479 LINC00526Q96FQ7 95 aa10.82□□□□□ -0.68
COL17A1-201ENST00000353479 C1orf158Q8N1D5 194 aa10.81□□□□□ -0.68
COL17A1-201ENST00000353479 CNFNQ9BYD5 112 aa10.81□□□□□ -0.68
COL17A1-201ENST00000353479 UBE2D3P61077 147 aa10.81□□□□□ -0.68
COL17A1-201ENST00000353479 UBE2D2P62837 147 aa10.81□□□□□ -0.68
COL17A1-201ENST00000353479 POLQO75417 2590 aa10.81□□□□□ -0.68
COL17A1-201ENST00000353479 SYCNQ0VAF6 134 aa10.81□□□□□ -0.68
COL17A1-201ENST00000353479 IGKV2D-26A0A0A0MRZ7 120 aa10.81□□□□□ -0.68
COL17A1-201ENST00000353479 PCSK5Q92824 1860 aa10.81□□□□□ -0.68
COL17A1-201ENST00000353479 HIGD2AQ9BW72 106 aa10.81□□□□□ -0.68
COL17A1-201ENST00000353479 LY6G6CO95867 125 aa10.8□□□□□ -0.68
COL17A1-201ENST00000353479 CD164L2Q6UWJ8 174 aa10.8□□□□□ -0.68
COL17A1-201ENST00000353479 EPG5Q9HCE0 2579 aa10.8□□□□□ -0.68
COL17A1-201ENST00000353479 IBA57-AS1B1ANH7 110 aa10.8□□□□□ -0.68
COL17A1-201ENST00000353479 PIK3CD-AS1Q5SR53 167 aa10.8□□□□□ -0.68
COL17A1-201ENST00000353479 MAPKAPK5-AS1Q8N8E1 139 aa10.8□□□□□ -0.68
COL17A1-201ENST00000353479 B9D2Q9BPU9 175 aa10.8□□□□□ -0.68
COL17A1-201ENST00000353479 LINC00959A0A1B0GUT2 108 aa10.79□□□□□ -0.68
COL17A1-201ENST00000353479 C9orf153Q5TBE3 101 aa10.79□□□□□ -0.68
COL17A1-201ENST00000353479 FAM19A5Q7Z5A7 132 aaPredicted RBP10.79□□□□□ -0.68
COL17A1-201ENST00000353479 H3BQ85 93 aa10.79□□□□□ -0.68
COL17A1-201ENST00000353479 WFDC2Q14508 124 aa10.79□□□□□ -0.68
COL17A1-201ENST00000353479 A0A087WZ39 114 aa10.78□□□□□ -0.68
COL17A1-201ENST00000353479 C4orf48Q5BLP8 95 aa10.77□□□□□ -0.68
COL17A1-201ENST00000353479 LINC00308Q8TCZ7 52 aa10.77□□□□□ -0.68
COL17A1-201ENST00000353479 MTORP42345 2549 aa10.77□□□□□ -0.69
COL17A1-201ENST00000353479 TRBV10-2A0A0K0K1G8 114 aa10.77□□□□□ -0.69
COL17A1-201ENST00000353479 A0A0B4J2C4 111 aa10.76□□□□□ -0.69
COL17A1-201ENST00000353479 TEN1Q86WV5 123 aa10.76□□□□□ -0.69
COL17A1-201ENST00000353479 NREPQ16612 68 aa10.76□□□□□ -0.69
COL17A1-201ENST00000353479 FAM19A1Q7Z5A9 133 aa10.76□□□□□ -0.69
COL17A1-201ENST00000353479 Q8N2B8 174 aa10.76□□□□□ -0.69
COL17A1-201ENST00000353479 JMJD7-PLA2G4BH0Y9G9 81 aa10.75□□□□□ -0.69
COL17A1-201ENST00000353479 MRPS36P82909 103 aaKnown RBP10.75□□□□□ -0.69
COL17A1-201ENST00000353479 ACYP1P07311 99 aa10.75□□□□□ -0.69
COL17A1-201ENST00000353479 RBM3P98179 157 aaKnown RBP10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms