RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ITPR2Q14571 2701 aa15.62■□□□□ 0.09
SHMT1-202ENST00000352886 LYRM7Q5U5X0 104 aa15.62■□□□□ 0.09
SHMT1-202ENST00000352886 VSIG2Q96IQ7 327 aa15.62■□□□□ 0.09
SHMT1-202ENST00000352886 GEMIN7Q9H840 131 aaKnown RBP15.62■□□□□ 0.09
SHMT1-202ENST00000352886 JMJD1CQ15652 2540 aa15.62■□□□□ 0.09
SHMT1-202ENST00000352886 A8MZ25 164 aa15.62■□□□□ 0.09
SHMT1-202ENST00000352886 GIG44P09565 113 aaPredicted RBP15.62■□□□□ 0.09
SHMT1-202ENST00000352886 DGAT2L7PQ6IED9 249 aa15.62■□□□□ 0.09
SHMT1-202ENST00000352886 EIF4EBP3O60516 100 aaPredicted RBP15.61■□□□□ 0.09
SHMT1-202ENST00000352886 NDUFA12Q9UI09 145 aa15.61■□□□□ 0.09
SHMT1-202ENST00000352886 K7EQD1 137 aa15.6■□□□□ 0.09
SHMT1-202ENST00000352886 NOP10Q9NPE3 64 aaKnown RBP15.6■□□□□ 0.09
SHMT1-202ENST00000352886 RPL36AP83881 106 aaKnown RBP15.6■□□□□ 0.09
SHMT1-202ENST00000352886 RPL36ALQ969Q0 106 aaKnown RBP15.6■□□□□ 0.09
SHMT1-202ENST00000352886 TRAV26-1A0A087WT03 109 aa15.59■□□□□ 0.09
SHMT1-202ENST00000352886 CMC4P56277 68 aaPredicted RBP15.59■□□□□ 0.09
SHMT1-202ENST00000352886 LITAFQ99732 161 aa15.59■□□□□ 0.09
SHMT1-202ENST00000352886 TRAV4A0A0B4J268 109 aa15.59■□□□□ 0.09
SHMT1-202ENST00000352886 IGLV1-51P01701 117 aa15.59■□□□□ 0.09
SHMT1-202ENST00000352886 PLA2G2AP14555 144 aa15.59■□□□□ 0.09
SHMT1-202ENST00000352886 TRBV10-1A0A0K0K1A3 114 aa15.58■□□□□ 0.09
SHMT1-202ENST00000352886 RPL35AP18077 110 aaKnown RBP15.58■□□□□ 0.09
SHMT1-202ENST00000352886 TCL1BO95988 128 aa15.58■□□□□ 0.08
SHMT1-202ENST00000352886 CDKN2A-AS1Q9UH64 79 aa15.58■□□□□ 0.08
SHMT1-202ENST00000352886 A0A0B4J2C4 111 aa15.57■□□□□ 0.08
SHMT1-202ENST00000352886 LINC00694P0DN24 101 aa15.57■□□□□ 0.08
SHMT1-202ENST00000352886 SMCPP49901 116 aaPredicted RBP15.57■□□□□ 0.08
SHMT1-202ENST00000352886 ZNF418Q8TF45 676 aaPredicted RBP15.57■□□□□ 0.08
SHMT1-202ENST00000352886 C19orf73Q9NVV2 129 aa15.57■□□□□ 0.08
SHMT1-202ENST00000352886 J3QKU1 62 aa15.56■□□□□ 0.08
SHMT1-202ENST00000352886 IGHV3-33P01772 117 aa15.56■□□□□ 0.08
SHMT1-202ENST00000352886 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.56■□□□□ 0.08
SHMT1-202ENST00000352886 SCGB1C2P0DMR2 95 aa15.56■□□□□ 0.08
SHMT1-202ENST00000352886 INSL3P51460 131 aa15.56■□□□□ 0.08
SHMT1-202ENST00000352886 DAZ2Q13117 558 aaKnown RBP15.56■□□□□ 0.08
SHMT1-202ENST00000352886 DAZ4Q86SG3 579 aaKnown RBP15.56■□□□□ 0.08
SHMT1-202ENST00000352886 DAZ3Q9NR90 486 aaKnown RBP15.56■□□□□ 0.08
SHMT1-202ENST00000352886 TRBV20-1A0A075B6N2 111 aa15.55■□□□□ 0.08
SHMT1-202ENST00000352886 PRSS2P07478 247 aa15.55■□□□□ 0.08
SHMT1-202ENST00000352886 TIRAPP58753 221 aa15.55■□□□□ 0.08
SHMT1-202ENST00000352886 HILS1P60008 231 aa15.55■□□□□ 0.08
SHMT1-202ENST00000352886 ADAMTSL4-AS1Q5T5F5 129 aa15.55■□□□□ 0.08
SHMT1-202ENST00000352886 NTM-AS1Q6ZSK4 140 aa15.55■□□□□ 0.08
SHMT1-202ENST00000352886 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.55■□□□□ 0.08
SHMT1-202ENST00000352886 PLAC8L1A1L4L8 177 aa15.55■□□□□ 0.08
SHMT1-202ENST00000352886 GAGE12JA6NER3 117 aa15.55■□□□□ 0.08
SHMT1-202ENST00000352886 H7C2G1 150 aa15.55■□□□□ 0.08
SHMT1-202ENST00000352886 GAGE4Q13068 117 aa15.55■□□□□ 0.08
SHMT1-202ENST00000352886 GAGE5Q13069 117 aa15.55■□□□□ 0.08
SHMT1-202ENST00000352886 ZFAND6Q6FIF0 208 aa15.55■□□□□ 0.08
SHMT1-202ENST00000352886 C16orf74Q96GX8 76 aa15.55■□□□□ 0.08
SHMT1-202ENST00000352886 FAM110AQ9BQ89 295 aa15.55■□□□□ 0.08
SHMT1-202ENST00000352886 IGLV5-45A0A087WSX0 123 aa15.54■□□□□ 0.08
SHMT1-202ENST00000352886 ERG28Q9UKR5 140 aa15.54■□□□□ 0.08
SHMT1-202ENST00000352886 COX6A2Q02221 97 aa15.54■□□□□ 0.08
SHMT1-202ENST00000352886 SPANXDQ9BXN6 97 aa15.53■□□□□ 0.08
SHMT1-202ENST00000352886 SPANXCQ9NY87 97 aa15.53■□□□□ 0.08
SHMT1-202ENST00000352886 GAGE7O76087 117 aa15.52■□□□□ 0.08
SHMT1-202ENST00000352886 GAGE12FP0CL80 117 aa15.52■□□□□ 0.08
SHMT1-202ENST00000352886 GAGE12GP0CL81 117 aa15.52■□□□□ 0.08
SHMT1-202ENST00000352886 GAGE12IP0CL82 117 aa15.52■□□□□ 0.08
SHMT1-202ENST00000352886 TRGV2A0A075B6R0 118 aa15.52■□□□□ 0.07
SHMT1-202ENST00000352886 NDUFA7O95182 113 aa15.52■□□□□ 0.07
SHMT1-202ENST00000352886 LINC00242Q5T6M2 205 aa15.52■□□□□ 0.07
SHMT1-202ENST00000352886 TMEM101Q96IK0 257 aa15.52■□□□□ 0.07
SHMT1-202ENST00000352886 HELZ2Q9BYK8 2649 aaKnown RBP15.51■□□□□ 0.07
SHMT1-202ENST00000352886 CSNK1G2-AS1Q8NCQ2 148 aa15.51■□□□□ 0.07
SHMT1-202ENST00000352886 C1QTNF4Q9BXJ3 329 aa15.51■□□□□ 0.07
SHMT1-202ENST00000352886 HERVK_113P63121 156 aa15.51■□□□□ 0.07
SHMT1-202ENST00000352886 MIAQ16674 131 aa15.51■□□□□ 0.07
SHMT1-202ENST00000352886 CSDC2Q9Y534 153 aaKnown RBP15.51■□□□□ 0.07
SHMT1-202ENST00000352886 Q1RN00 199 aa15.5■□□□□ 0.07
SHMT1-202ENST00000352886 SMR3AQ99954 134 aa15.5■□□□□ 0.07
SHMT1-202ENST00000352886 NPC2P61916 151 aa15.49■□□□□ 0.07
SHMT1-202ENST00000352886 SBSPONQ8IVN8 264 aa15.49■□□□□ 0.07
SHMT1-202ENST00000352886 UNC79Q9P2D8 2635 aa15.49■□□□□ 0.07
SHMT1-202ENST00000352886 TRAV13-1A0A0B4J241 112 aa15.48■□□□□ 0.07
SHMT1-202ENST00000352886 C2CD3Q4AC94 2353 aa15.48■□□□□ 0.07
SHMT1-202ENST00000352886 ATP6V0E2Q8NHE4 81 aa15.48■□□□□ 0.07
SHMT1-202ENST00000352886 NDUFA1O15239 70 aa15.47■□□□□ 0.07
SHMT1-202ENST00000352886 FOXI1Q12951 378 aa15.47■□□□□ 0.07
SHMT1-202ENST00000352886 LOC100131303A0A0U1RQF7 123 aa15.47■□□□□ 0.07
SHMT1-202ENST00000352886 CDC42SE2Q9NRR3 84 aa15.46■□□□□ 0.07
SHMT1-202ENST00000352886 FAM19A3Q7Z5A8 133 aa15.46■□□□□ 0.07
SHMT1-202ENST00000352886 OVOL2Q9BRP0 275 aa15.46■□□□□ 0.07
SHMT1-202ENST00000352886 IGLV5-39A0A0G2JS06 123 aa15.45■□□□□ 0.06
SHMT1-202ENST00000352886 TIMM17BO60830 172 aa15.45■□□□□ 0.06
SHMT1-202ENST00000352886 DAND5Q8N907 189 aa15.45■□□□□ 0.06
SHMT1-202ENST00000352886 HIVEP2P31629 2446 aa15.44■□□□□ 0.06
SHMT1-202ENST00000352886 TRBV6-4A0A1B0GX49 114 aa15.44■□□□□ 0.06
SHMT1-202ENST00000352886 UBE2L6O14933 153 aa15.44■□□□□ 0.06
SHMT1-202ENST00000352886 TMEM243Q9BU79 118 aa15.44■□□□□ 0.06
SHMT1-202ENST00000352886 CDIP1Q9H305 208 aa15.44■□□□□ 0.06
SHMT1-202ENST00000352886 TRGV4A0A0C4DH28 118 aa15.44■□□□□ 0.06
SHMT1-202ENST00000352886 SMIM1B2RUZ4 78 aa15.43■□□□□ 0.06
SHMT1-202ENST00000352886 KRTAP10-3P60369 221 aa15.43■□□□□ 0.06
SHMT1-202ENST00000352886 Q9H8V8 135 aa15.43■□□□□ 0.06
SHMT1-202ENST00000352886 KMT2BQ9UMN6 2715 aaPredicted RBP15.43■□□□□ 0.06
SHMT1-202ENST00000352886 FASNP49327 2511 aaKnown RBP15.43■□□□□ 0.06
SHMT1-202ENST00000352886 TEN1Q86WV5 123 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms