RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 CRYGDP07320 174 aa8.82□□□□□ -1
USP1-201ENST00000339950 WFDC11Q8NEX6 87 aa8.82□□□□□ -1
USP1-201ENST00000339950 K7EQG2 157 aa8.81□□□□□ -1
USP1-201ENST00000339950 TSHBP01222 138 aa8.81□□□□□ -1
USP1-201ENST00000339950 IGHV3-30-3P0DP02 117 aa8.81□□□□□ -1
USP1-201ENST00000339950 C20orf203Q8NBC4 194 aa8.81□□□□□ -1
USP1-201ENST00000339950 NXPH4O95158 308 aa8.81□□□□□ -1
USP1-201ENST00000339950 NFE4Q86UQ8 179 aa8.81□□□□□ -1
USP1-201ENST00000339950 Q9H8V8 135 aa8.81□□□□□ -1
USP1-201ENST00000339950 INSP01308 110 aa8.8□□□□□ -1
USP1-201ENST00000339950 PF4P02776 101 aa8.8□□□□□ -1
USP1-201ENST00000339950 Q6ZTI0 123 aa8.8□□□□□ -1
USP1-201ENST00000339950 LINC00467Q9BRT7 94 aa8.8□□□□□ -1
USP1-201ENST00000339950 Q6ZSN1 163 aa8.8□□□□□ -1
USP1-201ENST00000339950 C5orf38Q86SI9 138 aa8.8□□□□□ -1
USP1-201ENST00000339950 CDKN2A-AS1Q9UH64 79 aa8.8□□□□□ -1
USP1-201ENST00000339950 PSMB8P28062 276 aa8.8□□□□□ -1
USP1-201ENST00000339950 CFAP126Q5VTH2 177 aa8.8□□□□□ -1
USP1-201ENST00000339950 IGKV3D-7A0A0C4DH55 119 aa8.8□□□□□ -1
USP1-201ENST00000339950 RHODO00212 210 aa8.8□□□□□ -1
USP1-201ENST00000339950 MORN3Q6PF18 240 aaPredicted RBP8.8□□□□□ -1
USP1-201ENST00000339950 PSMG3-AS1Q96PY0 264 aa8.8□□□□□ -1
USP1-201ENST00000339950 SPATA25Q9BR10 227 aa8.8□□□□□ -1
USP1-201ENST00000339950 ZNF22P17026 224 aaPredicted RBP8.79□□□□□ -1
USP1-201ENST00000339950 POLR2KP53803 58 aaKnown RBP8.79□□□□□ -1
USP1-201ENST00000339950 IGLV4-3A0A075B6K6 122 aa8.79□□□□□ -1
USP1-201ENST00000339950 RPL36AP83881 106 aaKnown RBP8.79□□□□□ -1
USP1-201ENST00000339950 RPL36ALQ969Q0 106 aaKnown RBP8.79□□□□□ -1
USP1-201ENST00000339950 PRORYQ9H606 182 aa8.79□□□□□ -1
USP1-201ENST00000339950 SOCS3O14543 225 aa8.79□□□□□ -1
USP1-201ENST00000339950 NOTCH1P46531 2555 aa8.78□□□□□ -1
USP1-201ENST00000339950 CITED2Q99967 270 aaPredicted RBP8.78□□□□□ -1
USP1-201ENST00000339950 VPS13CQ709C8 3753 aa8.78□□□□□ -1
USP1-201ENST00000339950 KLLNB2CW77 178 aa8.78□□□□□ -1
USP1-201ENST00000339950 RBMY1A1P0DJD3 496 aaKnown RBP8.78□□□□□ -1
USP1-201ENST00000339950 RBMY1CP0DJD4 496 aa8.78□□□□□ -1
USP1-201ENST00000339950 RBMY1FQ15415 496 aaKnown RBP8.78□□□□□ -1
USP1-201ENST00000339950 IGLV4-69A0A075B6H9 119 aa8.78□□□□□ -1
USP1-201ENST00000339950 LOC100131303A0A0U1RQF7 123 aa8.78□□□□□ -1
USP1-201ENST00000339950 MAST4O15021 2626 aa8.77□□□□□ -1
USP1-201ENST00000339950 IGLV10-54A0A075B6I4 117 aa8.77□□□□□ -1.01
USP1-201ENST00000339950 BBC3Q96PG8 261 aaPredicted RBP8.77□□□□□ -1.01
USP1-201ENST00000339950 IGIPA6NJ69 53 aa8.77□□□□□ -1.01
USP1-201ENST00000339950 IGLV1-40P01703 118 aa8.77□□□□□ -1.01
USP1-201ENST00000339950 CRPP02741 224 aa8.77□□□□□ -1.01
USP1-201ENST00000339950 IGHV4-4A0A075B6R2 117 aa8.76□□□□□ -1.01
USP1-201ENST00000339950 CRLF1O75462 422 aa8.76□□□□□ -1.01
USP1-201ENST00000339950 ELANEP08246 267 aa8.76□□□□□ -1.01
USP1-201ENST00000339950 UNC79Q9P2D8 2635 aa8.76□□□□□ -1.01
USP1-201ENST00000339950 MAP6D1Q9H9H5 199 aa8.76□□□□□ -1.01
USP1-201ENST00000339950 ICOSQ9Y6W8 199 aa8.76□□□□□ -1.01
USP1-201ENST00000339950 ZFHX3Q15911 3703 aa8.76□□□□□ -1.01
USP1-201ENST00000339950 CCL24O00175 119 aa8.76□□□□□ -1.01
USP1-201ENST00000339950 A0A0J9YXY3 114 aa8.75□□□□□ -1.01
USP1-201ENST00000339950 Q9HAA7 133 aa8.75□□□□□ -1.01
USP1-201ENST00000339950 H3BUA1 57 aa8.75□□□□□ -1.01
USP1-201ENST00000339950 K7EMT4 169 aa8.75□□□□□ -1.01
USP1-201ENST00000339950 BAALC-AS2P0C853 105 aa8.74□□□□□ -1.01
USP1-201ENST00000339950 LINC00315P59091 139 aa8.74□□□□□ -1.01
USP1-201ENST00000339950 RPL32P62910 135 aaKnown RBP8.74□□□□□ -1.01
USP1-201ENST00000339950 SMR3AQ99954 134 aa8.74□□□□□ -1.01
USP1-201ENST00000339950 XCL1P47992 114 aa8.74□□□□□ -1.01
USP1-201ENST00000339950 PIK3CD-AS1Q5SR53 167 aa8.74□□□□□ -1.01
USP1-201ENST00000339950 TIMM17AQ99595 171 aa8.74□□□□□ -1.01
USP1-201ENST00000339950 LEPROTO15243 131 aa8.74□□□□□ -1.01
USP1-201ENST00000339950 SLC25A29Q8N8R3 303 aa8.74□□□□□ -1.01
USP1-201ENST00000339950 ZNF702PQ9H963 129 aa8.73□□□□□ -1.01
USP1-201ENST00000339950 IGHV3-30P01768 117 aa8.73□□□□□ -1.01
USP1-201ENST00000339950 IGHV3-30-5P0DP03 117 aa8.73□□□□□ -1.01
USP1-201ENST00000339950 IGHV4-31P0DP07 118 aa8.73□□□□□ -1.01
USP1-201ENST00000339950 ADAMTSL4-AS1Q5T5F5 129 aa8.73□□□□□ -1.01
USP1-201ENST00000339950 TRBV27A0A0K0K1C4 114 aa8.73□□□□□ -1.01
USP1-201ENST00000339950 SHISA2Q6UWI4 295 aa8.73□□□□□ -1.01
USP1-201ENST00000339950 TRIAP1O43715 76 aa8.72□□□□□ -1.01
USP1-201ENST00000339950 COPS9Q8WXC6 57 aa8.72□□□□□ -1.01
USP1-201ENST00000339950 KIF25-AS1Q9Y6Z4 181 aa8.72□□□□□ -1.01
USP1-201ENST00000339950 RBMY1BA6NDE4 496 aaKnown RBP8.72□□□□□ -1.01
USP1-201ENST00000339950 RBMY1EA6NEQ0 496 aaKnown RBP8.72□□□□□ -1.01
USP1-201ENST00000339950 RBMY1DP0C7P1 496 aaKnown RBP8.72□□□□□ -1.01
USP1-201ENST00000339950 DSCR9P59020 149 aa8.72□□□□□ -1.01
USP1-201ENST00000339950 POM121L12Q8N7R1 296 aa8.72□□□□□ -1.01
USP1-201ENST00000339950 DEFB113Q30KQ7 82 aa8.72□□□□□ -1.01
USP1-201ENST00000339950 ATP6V0E2Q8NHE4 81 aa8.72□□□□□ -1.01
USP1-201ENST00000339950 TRBV10-2A0A0K0K1G8 114 aa8.71□□□□□ -1.01
USP1-201ENST00000339950 LGALS9O00182 355 aa8.71□□□□□ -1.01
USP1-201ENST00000339950 RHOHQ15669 191 aa8.71□□□□□ -1.01
USP1-201ENST00000339950 LINC00694P0DN24 101 aa8.71□□□□□ -1.01
USP1-201ENST00000339950 C6orf226Q5I0X4 101 aa8.71□□□□□ -1.01
USP1-201ENST00000339950 TMEM223A0PJW6 202 aa8.71□□□□□ -1.02
USP1-201ENST00000339950 IGHV3-33P01772 117 aa8.71□□□□□ -1.02
USP1-201ENST00000339950 CDIP1Q9H305 208 aa8.71□□□□□ -1.02
USP1-201ENST00000339950 SMCPP49901 116 aaPredicted RBP8.71□□□□□ -1.02
USP1-201ENST00000339950 A0A1B0GX51 115 aa8.7□□□□□ -1.02
USP1-201ENST00000339950 ATP5G1P05496 136 aa8.7□□□□□ -1.02
USP1-201ENST00000339950 DEFB114Q30KQ6 69 aa8.7□□□□□ -1.02
USP1-201ENST00000339950 C9orf85Q96MD7 179 aa8.7□□□□□ -1.02
USP1-201ENST00000339950 MED14OSP0DP75 135 aa8.69□□□□□ -1.02
USP1-201ENST00000339950 TMEM126AQ9H061 195 aa8.69□□□□□ -1.02
USP1-201ENST00000339950 LAMTOR3Q9UHA4 124 aa8.69□□□□□ -1.02
USP1-201ENST00000339950 LINC01546A6NGU7 62 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms