RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 MAJINQ3KP22 176 aa7.29□□□□□ -1.24
USP54-201ENST00000339859 CNFNQ9BYD5 112 aa7.29□□□□□ -1.24
USP54-201ENST00000339859 SPTBN4Q9H254 2564 aa7.28□□□□□ -1.24
USP54-201ENST00000339859 DNAH12Q6ZR08 3092 aa7.28□□□□□ -1.24
USP54-201ENST00000339859 LINC00959A0A1B0GUT2 108 aa7.28□□□□□ -1.24
USP54-201ENST00000339859 MIR7-3HGQ8N6C7 128 aa7.28□□□□□ -1.24
USP54-201ENST00000339859 KRTAP1-1Q07627 177 aa7.28□□□□□ -1.24
USP54-201ENST00000339859 ODF1Q14990 250 aa7.28□□□□□ -1.24
USP54-201ENST00000339859 LINC00173Q6ZV60 143 aa7.28□□□□□ -1.24
USP54-201ENST00000339859 WWC2-AS2Q96NR7 200 aa7.28□□□□□ -1.24
USP54-201ENST00000339859 UBE2D4Q9Y2X8 147 aa7.28□□□□□ -1.24
USP54-201ENST00000339859 A0A087WZ39 114 aa7.27□□□□□ -1.25
USP54-201ENST00000339859 IGLV5-52A0A0A0MRZ9 124 aa7.27□□□□□ -1.25
USP54-201ENST00000339859 H0YGX0 51 aa7.27□□□□□ -1.25
USP54-201ENST00000339859 IGLC3P0DOY3 106 aa7.27□□□□□ -1.25
USP54-201ENST00000339859 NRACQ8N912 160 aa7.27□□□□□ -1.25
USP54-201ENST00000339859 ORMDL1Q9P0S3 153 aa7.27□□□□□ -1.25
USP54-201ENST00000339859 MUSTN1Q8IVN3 82 aa7.27□□□□□ -1.25
USP54-201ENST00000339859 LECT2O14960 151 aa7.27□□□□□ -1.25
USP54-201ENST00000339859 INAFM2P0DMQ5 153 aa7.27□□□□□ -1.25
USP54-201ENST00000339859 C9JAW5 83 aa7.26□□□□□ -1.25
USP54-201ENST00000339859 LYPD5Q6UWN5 251 aa7.26□□□□□ -1.25
USP54-201ENST00000339859 FAM19A5Q7Z5A7 132 aaPredicted RBP7.25□□□□□ -1.25
USP54-201ENST00000339859 CELA1Q9UNI1 258 aa7.25□□□□□ -1.25
USP54-201ENST00000339859 POLR2KP53803 58 aaKnown RBP7.25□□□□□ -1.25
USP54-201ENST00000339859 PCP2Q8IVA1 136 aa7.25□□□□□ -1.25
USP54-201ENST00000339859 MUC7Q8TAX7 377 aa7.25□□□□□ -1.25
USP54-201ENST00000339859 TMEM223A0PJW6 202 aa7.25□□□□□ -1.25
USP54-201ENST00000339859 IBA57-AS1B1ANH7 110 aa7.25□□□□□ -1.25
USP54-201ENST00000339859 CFC1BP0CG36 223 aa7.25□□□□□ -1.25
USP54-201ENST00000339859 CFC1P0CG37 223 aa7.25□□□□□ -1.25
USP54-201ENST00000339859 MDFIQ99750 246 aa7.25□□□□□ -1.25
USP54-201ENST00000339859 A0A1B0GV90 55 aa7.25□□□□□ -1.25
USP54-201ENST00000339859 RBMY1FQ15415 496 aaKnown RBP7.25□□□□□ -1.25
USP54-201ENST00000339859 C12orf74Q32Q52 190 aa7.25□□□□□ -1.25
USP54-201ENST00000339859 NAA38Q9BRA0 125 aaKnown RBP7.25□□□□□ -1.25
USP54-201ENST00000339859 C9orf153Q5TBE3 101 aa7.24□□□□□ -1.25
USP54-201ENST00000339859 GAGE2AQ6NT46 116 aa7.24□□□□□ -1.25
USP54-201ENST00000339859 POM121L12Q8N7R1 296 aa7.24□□□□□ -1.25
USP54-201ENST00000339859 CEP295Q9C0D2 2601 aa7.24□□□□□ -1.25
USP54-201ENST00000339859 CDKN2A-AS1Q9UH64 79 aa7.24□□□□□ -1.25
USP54-201ENST00000339859 C21orf62-AS1Q17RA5 79 aa7.24□□□□□ -1.25
USP54-201ENST00000339859 PKD1L2Q7Z442 2459 aa7.24□□□□□ -1.25
USP54-201ENST00000339859 F8WDY8 70 aa7.24□□□□□ -1.25
USP54-201ENST00000339859 COX7BP24311 80 aa7.24□□□□□ -1.25
USP54-201ENST00000339859 DAND5Q8N907 189 aa7.24□□□□□ -1.25
USP54-201ENST00000339859 K7EP13 123 aa7.24□□□□□ -1.25
USP54-201ENST00000339859 H3BNG1 76 aa7.23□□□□□ -1.25
USP54-201ENST00000339859 FAM19A1Q7Z5A9 133 aa7.23□□□□□ -1.25
USP54-201ENST00000339859 NUPR1O60356 82 aa7.23□□□□□ -1.25
USP54-201ENST00000339859 CDC42SE2Q9NRR3 84 aa7.23□□□□□ -1.25
USP54-201ENST00000339859 HTTP42858 3142 aa7.23□□□□□ -1.25
USP54-201ENST00000339859 ZNF22P17026 224 aaPredicted RBP7.23□□□□□ -1.25
USP54-201ENST00000339859 CCDC168Q8NDH2 2452 aa7.23□□□□□ -1.25
USP54-201ENST00000339859 KRTAP10-3P60369 221 aa7.22□□□□□ -1.25
USP54-201ENST00000339859 ZNF706Q9Y5V0 76 aaPredicted RBP7.22□□□□□ -1.25
USP54-201ENST00000339859 UBE2D1P51668 147 aa7.22□□□□□ -1.25
USP54-201ENST00000339859 C9orf118A6NHY6 69 aa7.22□□□□□ -1.25
USP54-201ENST00000339859 SPATA12Q7Z6I5 190 aa7.22□□□□□ -1.25
USP54-201ENST00000339859 FAM19A4Q96LR4 140 aa7.22□□□□□ -1.25
USP54-201ENST00000339859 HIGD1BQ9P298 99 aa7.22□□□□□ -1.25
USP54-201ENST00000339859 FUSP35637 526 aaKnown RBP eCLIP7.21□□□□□ -1.25
USP54-201ENST00000339859 ANKRD39Q53RE8 183 aa7.21□□□□□ -1.25
USP54-201ENST00000339859 LRCOL1A6NCL2 159 aa7.21□□□□□ -1.26
USP54-201ENST00000339859 COX17Q14061 63 aa7.21□□□□□ -1.26
USP54-201ENST00000339859 C11orf72Q8NBR9 251 aa7.21□□□□□ -1.26
USP54-201ENST00000339859 X6R8D5 127 aa7.21□□□□□ -1.26
USP54-201ENST00000339859 SPANXDQ9BXN6 97 aa7.21□□□□□ -1.26
USP54-201ENST00000339859 A0A0J9YXY3 114 aa7.2□□□□□ -1.26
USP54-201ENST00000339859 A4D1N5 150 aa7.2□□□□□ -1.26
USP54-201ENST00000339859 SPANXB1Q9NS25 103 aaPredicted RBP7.2□□□□□ -1.26
USP54-201ENST00000339859 SPANXCQ9NY87 97 aa7.2□□□□□ -1.26
USP54-201ENST00000339859 KRTAP10-11P60412 298 aa7.2□□□□□ -1.26
USP54-201ENST00000339859 TNCP24821 2201 aa7.2□□□□□ -1.26
USP54-201ENST00000339859 TRBV30A0A0K0K1B3 111 aa7.2□□□□□ -1.26
USP54-201ENST00000339859 Q8IZM0 81 aa7.2□□□□□ -1.26
USP54-201ENST00000339859 C3orf84H3BNL1 204 aa7.2□□□□□ -1.26
USP54-201ENST00000339859 DLEU1O43261 78 aa7.2□□□□□ -1.26
USP54-201ENST00000339859 WFDC10BQ8IUB3 73 aa7.19□□□□□ -1.26
USP54-201ENST00000339859 K7EIL1 84 aa7.19□□□□□ -1.26
USP54-201ENST00000339859 PLXNB1O43157 2135 aa7.19□□□□□ -1.26
USP54-201ENST00000339859 A0A1B0GUV1 79 aa7.19□□□□□ -1.26
USP54-201ENST00000339859 K7ERJ3 54 aa7.19□□□□□ -1.26
USP54-201ENST00000339859 HIGD2AQ9BW72 106 aa7.19□□□□□ -1.26
USP54-201ENST00000339859 UBL5Q9BZL1 73 aa7.19□□□□□ -1.26
USP54-201ENST00000339859 CEP350Q5VT06 3117 aa7.18□□□□□ -1.26
USP54-201ENST00000339859 CHD8Q9HCK8 2581 aa7.18□□□□□ -1.26
USP54-201ENST00000339859 CENPFP49454 3210 aa7.18□□□□□ -1.26
USP54-201ENST00000339859 USP17L23D6RBM5 183 aa7.18□□□□□ -1.26
USP54-201ENST00000339859 HIST1H4AP62805 103 aaKnown RBP7.18□□□□□ -1.26
USP54-201ENST00000339859 CSDC2Q9Y534 153 aaKnown RBP7.18□□□□□ -1.26
USP54-201ENST00000339859 DOPEY1Q5JWR5 2465 aa7.17□□□□□ -1.26
USP54-201ENST00000339859 M0R378 163 aa7.17□□□□□ -1.26
USP54-201ENST00000339859 BAALC-AS2P0C853 105 aa7.17□□□□□ -1.26
USP54-201ENST00000339859 Q8NAQ8 132 aa7.17□□□□□ -1.26
USP54-201ENST00000339859 Q6ZSN1 163 aa7.16□□□□□ -1.26
USP54-201ENST00000339859 C19orf73Q9NVV2 129 aa7.16□□□□□ -1.26
USP54-201ENST00000339859 EGFEM1PQ0D2K5 195 aa7.16□□□□□ -1.26
USP54-201ENST00000339859 LINC01556Q5JQF7 62 aa7.16□□□□□ -1.26
USP54-201ENST00000339859 C6orf223Q8N319 242 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms