RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 CRYBA4P53673 196 aa9.38□□□□□ -0.91
HMGCS1-201ENST00000325110 FHL3Q13643 280 aa9.38□□□□□ -0.91
HMGCS1-201ENST00000325110 ATP6V0E2Q8NHE4 81 aa9.38□□□□□ -0.91
HMGCS1-201ENST00000325110 CDIP1Q9H305 208 aa9.38□□□□□ -0.91
HMGCS1-201ENST00000325110 USP24Q9UPU5 2620 aa9.38□□□□□ -0.91
HMGCS1-201ENST00000325110 ANAPC13Q9BS18 74 aa9.38□□□□□ -0.91
HMGCS1-201ENST00000325110 ICOSQ9Y6W8 199 aa9.38□□□□□ -0.91
HMGCS1-201ENST00000325110 RPL36AP83881 106 aaKnown RBP9.38□□□□□ -0.91
HMGCS1-201ENST00000325110 RPL36ALQ969Q0 106 aaKnown RBP9.38□□□□□ -0.91
HMGCS1-201ENST00000325110 TRAV8-4A0A0B4J246 113 aa9.37□□□□□ -0.91
HMGCS1-201ENST00000325110 VSIG2Q96IQ7 327 aa9.37□□□□□ -0.91
HMGCS1-201ENST00000325110 SPANXA1Q9NS26 97 aa9.37□□□□□ -0.91
HMGCS1-201ENST00000325110 TMEM89A2RUT3 159 aa9.37□□□□□ -0.91
HMGCS1-201ENST00000325110 NOP10Q9NPE3 64 aaKnown RBP9.37□□□□□ -0.91
HMGCS1-201ENST00000325110 UBE2D4Q9Y2X8 147 aa9.37□□□□□ -0.91
HMGCS1-201ENST00000325110 ITPR3Q14573 2671 aa9.37□□□□□ -0.91
HMGCS1-201ENST00000325110 A0A0B4J2C4 111 aa9.36□□□□□ -0.91
HMGCS1-201ENST00000325110 TMEM262E9PQX1 116 aa9.36□□□□□ -0.91
HMGCS1-201ENST00000325110 GAGE7O76087 117 aa9.36□□□□□ -0.91
HMGCS1-201ENST00000325110 GAGE12FP0CL80 117 aa9.36□□□□□ -0.91
HMGCS1-201ENST00000325110 GAGE12GP0CL81 117 aa9.36□□□□□ -0.91
HMGCS1-201ENST00000325110 GAGE12IP0CL82 117 aa9.36□□□□□ -0.91
HMGCS1-201ENST00000325110 SCGB1A1P11684 91 aa9.36□□□□□ -0.91
HMGCS1-201ENST00000325110 ZFAND6Q6FIF0 208 aa9.36□□□□□ -0.91
HMGCS1-201ENST00000325110 Q6ZTI0 123 aa9.36□□□□□ -0.91
HMGCS1-201ENST00000325110 EIF4EBP3O60516 100 aaPredicted RBP9.36□□□□□ -0.91
HMGCS1-201ENST00000325110 TRAV26-1A0A087WT03 109 aa9.36□□□□□ -0.91
HMGCS1-201ENST00000325110 MRPS36P82909 103 aaKnown RBP9.36□□□□□ -0.91
HMGCS1-201ENST00000325110 UBE2WQ96B02 151 aa9.36□□□□□ -0.91
HMGCS1-201ENST00000325110 CHCHD7Q9BUK0 85 aa9.36□□□□□ -0.91
HMGCS1-201ENST00000325110 DEFB114Q30KQ6 69 aa9.35□□□□□ -0.91
HMGCS1-201ENST00000325110 C11orf68Q9H3H3 251 aaKnown RBP9.35□□□□□ -0.91
HMGCS1-201ENST00000325110 GAGE2BQ13066 116 aa9.35□□□□□ -0.91
HMGCS1-201ENST00000325110 GAGE2EQ4V326 116 aa9.35□□□□□ -0.91
HMGCS1-201ENST00000325110 WFDC10AQ9H1F0 79 aa9.35□□□□□ -0.91
HMGCS1-201ENST00000325110 GAGE2DQ9UEU5 116 aa9.35□□□□□ -0.91
HMGCS1-201ENST00000325110 NIPBLQ6KC79 2804 aaeCLIP9.35□□□□□ -0.915e-7■■□□□ 13.4
HMGCS1-201ENST00000325110 YAE1D1Q9NRH1 226 aa9.35□□□□□ -0.91
HMGCS1-201ENST00000325110 MIAQ16674 131 aa9.34□□□□□ -0.91
HMGCS1-201ENST00000325110 TTC32Q5I0X7 151 aa9.34□□□□□ -0.91
HMGCS1-201ENST00000325110 PYGO1Q9Y3Y4 419 aa9.34□□□□□ -0.91
HMGCS1-201ENST00000325110 TINCRA0A1B0GVN0 87 aa9.34□□□□□ -0.91
HMGCS1-201ENST00000325110 LINC00694P0DN24 101 aa9.34□□□□□ -0.91
HMGCS1-201ENST00000325110 HIST2H2BCQ6DN03 193 aa9.34□□□□□ -0.91
HMGCS1-201ENST00000325110 NBEAL2Q6ZNJ1 2754 aa9.33□□□□□ -0.92
HMGCS1-201ENST00000325110 COX6A2Q02221 97 aa9.33□□□□□ -0.92
HMGCS1-201ENST00000325110 TMEM101Q96IK0 257 aa9.33□□□□□ -0.92
HMGCS1-201ENST00000325110 TRGV4A0A0C4DH28 118 aa9.32□□□□□ -0.92
HMGCS1-201ENST00000325110 GAGE6Q13070 117 aa9.32□□□□□ -0.92
HMGCS1-201ENST00000325110 ODF3L2Q3SX64 289 aa9.32□□□□□ -0.92
HMGCS1-201ENST00000325110 GCN1Q92616 2671 aaKnown RBP9.32□□□□□ -0.92
HMGCS1-201ENST00000325110 DEFB113Q30KQ7 82 aa9.32□□□□□ -0.92
HMGCS1-201ENST00000325110 CHCHD5Q9BSY4 110 aa9.32□□□□□ -0.92
HMGCS1-201ENST00000325110 CCL24O00175 119 aa9.31□□□□□ -0.92
HMGCS1-201ENST00000325110 C4orf3Q8WVX3 66 aa9.31□□□□□ -0.92
HMGCS1-201ENST00000325110 RNF183Q96D59 192 aa9.31□□□□□ -0.92
HMGCS1-201ENST00000325110 TRBV10-2A0A0K0K1G8 114 aa9.31□□□□□ -0.92
HMGCS1-201ENST00000325110 C15orf53Q8NAA6 179 aa9.31□□□□□ -0.92
HMGCS1-201ENST00000325110 DEFB130BP0DP73 79 aa9.3□□□□□ -0.92
HMGCS1-201ENST00000325110 DEFB130AP0DP74 79 aa9.3□□□□□ -0.92
HMGCS1-201ENST00000325110 HERVK_113P63121 156 aa9.3□□□□□ -0.92
HMGCS1-201ENST00000325110 LOC100131303A0A0U1RQF7 123 aa9.3□□□□□ -0.92
HMGCS1-201ENST00000325110 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.3□□□□□ -0.92
HMGCS1-201ENST00000325110 CITED2Q99967 270 aaPredicted RBP9.3□□□□□ -0.92
HMGCS1-201ENST00000325110 TRAV4A0A0B4J268 109 aa9.29□□□□□ -0.92
HMGCS1-201ENST00000325110 PLA2G2AP14555 144 aa9.29□□□□□ -0.92
HMGCS1-201ENST00000325110 PIK3CD-AS1Q5SR53 167 aa9.29□□□□□ -0.92
HMGCS1-201ENST00000325110 C11orf72Q8NBR9 251 aa9.29□□□□□ -0.92
HMGCS1-201ENST00000325110 WFDC11Q8NEX6 87 aa9.29□□□□□ -0.92
HMGCS1-201ENST00000325110 K7EQD1 137 aa9.29□□□□□ -0.92
HMGCS1-201ENST00000325110 LINC00158P58513 81 aa9.29□□□□□ -0.92
HMGCS1-201ENST00000325110 BBC3Q96PG8 261 aaPredicted RBP9.29□□□□□ -0.92
HMGCS1-201ENST00000325110 TRBV30A0A0K0K1B3 111 aa9.28□□□□□ -0.92
HMGCS1-201ENST00000325110 OR13C6PQ8NH95 151 aa9.28□□□□□ -0.92
HMGCS1-201ENST00000325110 PFN2P35080 140 aa9.28□□□□□ -0.92
HMGCS1-201ENST00000325110 C1orf158Q8N1D5 194 aa9.28□□□□□ -0.92
HMGCS1-201ENST00000325110 DNAJC30Q96LL9 226 aa9.28□□□□□ -0.92
HMGCS1-201ENST00000325110 LITAFQ99732 161 aa9.28□□□□□ -0.92
HMGCS1-201ENST00000325110 A0A096LPF7 62 aa9.28□□□□□ -0.92
HMGCS1-201ENST00000325110 LINC00242Q5T6M2 205 aa9.28□□□□□ -0.92
HMGCS1-201ENST00000325110 CLUHP3Q96NS8 147 aa9.28□□□□□ -0.92
HMGCS1-201ENST00000325110 H7C423 109 aa9.27□□□□□ -0.92
HMGCS1-201ENST00000325110 CRLF1O75462 422 aa9.27□□□□□ -0.92
HMGCS1-201ENST00000325110 TMEM243Q9BU79 118 aa9.27□□□□□ -0.92
HMGCS1-201ENST00000325110 DNAJC9-AS1A6NH13 148 aa9.27□□□□□ -0.93
HMGCS1-201ENST00000325110 RS1O15537 224 aa9.27□□□□□ -0.93
HMGCS1-201ENST00000325110 CLPSL2Q6UWE3 100 aa9.27□□□□□ -0.93
HMGCS1-201ENST00000325110 LINC00308Q8TCZ7 52 aa9.27□□□□□ -0.93
HMGCS1-201ENST00000325110 FAM104AQ969W3 186 aa9.27□□□□□ -0.93
HMGCS1-201ENST00000325110 A0A096LNT2 108 aa9.26□□□□□ -0.93
HMGCS1-201ENST00000325110 SPANXDQ9BXN6 97 aa9.26□□□□□ -0.93
HMGCS1-201ENST00000325110 SPANXCQ9NY87 97 aa9.26□□□□□ -0.93
HMGCS1-201ENST00000325110 C5orf38Q86SI9 138 aa9.26□□□□□ -0.93
HMGCS1-201ENST00000325110 FASNP49327 2511 aaKnown RBP9.26□□□□□ -0.93
HMGCS1-201ENST00000325110 B5MCH6 92 aa9.26□□□□□ -0.93
HMGCS1-201ENST00000325110 NDUFA1O15239 70 aa9.25□□□□□ -0.93
HMGCS1-201ENST00000325110 IFITM1P13164 125 aa9.25□□□□□ -0.93
HMGCS1-201ENST00000325110 RNF152Q8N8N0 203 aa9.25□□□□□ -0.93
HMGCS1-201ENST00000325110 APCP25054 2843 aa9.24□□□□□ -0.93
HMGCS1-201ENST00000325110 SETXQ7Z333 2677 aaKnown RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms