RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 MRPS36P82909 103 aaKnown RBP10.85□□□□□ -0.67
TCOF1-201ENST00000323668 AVPP01185 164 aa10.85□□□□□ -0.67
TCOF1-201ENST00000323668 ABCA12Q86UK0 2595 aa10.85□□□□□ -0.67
TCOF1-201ENST00000323668 PRB1P04280 392 aa10.84□□□□□ -0.67
TCOF1-201ENST00000323668 CRLF1O75462 422 aa10.84□□□□□ -0.67
TCOF1-201ENST00000323668 SPANXCQ9NY87 97 aa10.84□□□□□ -0.67
TCOF1-201ENST00000323668 PRM2P04554 102 aa10.84□□□□□ -0.67
TCOF1-201ENST00000323668 HIST2H2BCQ6DN03 193 aa10.84□□□□□ -0.67
TCOF1-201ENST00000323668 HIST2H2BDQ6DRA6 164 aa10.84□□□□□ -0.67
TCOF1-201ENST00000323668 TIMM17BO60830 172 aa10.83□□□□□ -0.68
TCOF1-201ENST00000323668 UBE2D4Q9Y2X8 147 aa10.83□□□□□ -0.68
TCOF1-201ENST00000323668 LECT2O14960 151 aa10.83□□□□□ -0.68
TCOF1-201ENST00000323668 LINC00643Q86TS7 51 aa10.83□□□□□ -0.68
TCOF1-201ENST00000323668 Q9HAA7 133 aa10.82□□□□□ -0.68
TCOF1-201ENST00000323668 KIF25-AS1Q9Y6Z4 181 aa10.82□□□□□ -0.68
TCOF1-201ENST00000323668 MRPL23Q16540 153 aaKnown RBP10.82□□□□□ -0.68
TCOF1-201ENST00000323668 SMIM20Q8N5G0 67 aa10.82□□□□□ -0.68
TCOF1-201ENST00000323668 CITED2Q99967 270 aaPredicted RBP10.82□□□□□ -0.68
TCOF1-201ENST00000323668 ZNF702PQ9H963 129 aa10.81□□□□□ -0.68
TCOF1-201ENST00000323668 IGHV4-31P0DP07 118 aa10.81□□□□□ -0.68
TCOF1-201ENST00000323668 HAMPP81172 84 aa10.81□□□□□ -0.68
TCOF1-201ENST00000323668 ZNF561-AS1K7EIQ3 104 aa10.8□□□□□ -0.68
TCOF1-201ENST00000323668 PIK3CD-AS1Q5SR53 167 aa10.8□□□□□ -0.68
TCOF1-201ENST00000323668 LST1O00453 97 aa10.8□□□□□ -0.68
TCOF1-201ENST00000323668 APOC4P55056 127 aa10.8□□□□□ -0.68
TCOF1-201ENST00000323668 POM121L12Q8N7R1 296 aa10.79□□□□□ -0.68
TCOF1-201ENST00000323668 IGKV3D-7A0A0C4DH55 119 aa10.79□□□□□ -0.68
TCOF1-201ENST00000323668 TRACP01848 142 aa10.79□□□□□ -0.68
TCOF1-201ENST00000323668 IGLV10-54A0A075B6I4 117 aa10.79□□□□□ -0.68
TCOF1-201ENST00000323668 LRRK2Q5S007 2527 aa10.78□□□□□ -0.68
TCOF1-201ENST00000323668 ATOX1O00244 68 aa10.77□□□□□ -0.68
TCOF1-201ENST00000323668 DSCR8Q96T75 97 aa10.77□□□□□ -0.68
TCOF1-201ENST00000323668 C18orf65Q6ZTR6 163 aa10.77□□□□□ -0.69
TCOF1-201ENST00000323668 PRRC2AP48634 2157 aaKnown RBP10.77□□□□□ -0.69
TCOF1-201ENST00000323668 XIRP2A4UGR9 3374 aa10.77□□□□□ -0.69
TCOF1-201ENST00000323668 LINC00315P59091 139 aa10.77□□□□□ -0.69
TCOF1-201ENST00000323668 FN1P02751 2386 aaKnown RBP10.77□□□□□ -0.69
TCOF1-201ENST00000323668 DNAJC9-AS1A6NH13 148 aa10.76□□□□□ -0.69
TCOF1-201ENST00000323668 H7C423 109 aa10.76□□□□□ -0.69
TCOF1-201ENST00000323668 ZNF580Q9UK33 172 aa10.76□□□□□ -0.69
TCOF1-201ENST00000323668 C3orf56Q8N813 242 aa10.76□□□□□ -0.69
TCOF1-201ENST00000323668 ATP5G1P05496 136 aa10.75□□□□□ -0.69
TCOF1-201ENST00000323668 AMELXQ99217 191 aa10.75□□□□□ -0.69
TCOF1-201ENST00000323668 POLQO75417 2590 aa10.75□□□□□ -0.69
TCOF1-201ENST00000323668 A0A1B0GX51 115 aa10.75□□□□□ -0.69
TCOF1-201ENST00000323668 Q6ZSV7 163 aa10.75□□□□□ -0.69
TCOF1-201ENST00000323668 TMEM126AQ9H061 195 aa10.75□□□□□ -0.69
TCOF1-201ENST00000323668 JMJD7-PLA2G4BH0Y9G9 81 aa10.74□□□□□ -0.69
TCOF1-201ENST00000323668 C14orf132Q9NPU4 83 aa10.74□□□□□ -0.69
TCOF1-201ENST00000323668 PRO0255Q9UI72 69 aa10.74□□□□□ -0.69
TCOF1-201ENST00000323668 FAM19A4Q96LR4 140 aa10.74□□□□□ -0.69
TCOF1-201ENST00000323668 ESM1Q9NQ30 184 aa10.74□□□□□ -0.69
TCOF1-201ENST00000323668 CITED1Q99966 193 aa10.73□□□□□ -0.69
TCOF1-201ENST00000323668 TRBV6-4A0A1B0GX49 114 aa10.73□□□□□ -0.69
TCOF1-201ENST00000323668 ADAMTSL4-AS1Q5T5F5 129 aa10.73□□□□□ -0.69
TCOF1-201ENST00000323668 LINC00242Q5T6M2 205 aa10.73□□□□□ -0.69
TCOF1-201ENST00000323668 DNAH14Q0VDD8 3507 aa10.72□□□□□ -0.69
TCOF1-201ENST00000323668 IBA57-AS1B1ANH7 110 aa10.72□□□□□ -0.69
TCOF1-201ENST00000323668 CHCHD7Q9BUK0 85 aa10.72□□□□□ -0.69
TCOF1-201ENST00000323668 CXCL5P42830 114 aa10.72□□□□□ -0.69
TCOF1-201ENST00000323668 PKD1L2Q7Z442 2459 aa10.72□□□□□ -0.69
TCOF1-201ENST00000323668 PRO0461Q9UI25 63 aa10.72□□□□□ -0.69
TCOF1-201ENST00000323668 TRBV6-8A0A0A6YYG3 113 aa10.71□□□□□ -0.69
TCOF1-201ENST00000323668 LRRC75A-AS1Q8N1F1 130 aa10.71□□□□□ -0.69
TCOF1-201ENST00000323668 KLK9Q2XQG4 91 aa10.71□□□□□ -0.69
TCOF1-201ENST00000323668 VPS13AQ96RL7 3174 aa10.7□□□□□ -0.7
TCOF1-201ENST00000323668 CDC42SE2Q9NRR3 84 aa10.69□□□□□ -0.7
TCOF1-201ENST00000323668 MTORP42345 2549 aa10.69□□□□□ -0.7
TCOF1-201ENST00000323668 FAM222AQ5U5X8 452 aa10.69□□□□□ -0.7
TCOF1-201ENST00000323668 CDIP1Q9H305 208 aa10.69□□□□□ -0.7
TCOF1-201ENST00000323668 TMEM256-PLSCR3K7ERE1 68 aa10.69□□□□□ -0.7
TCOF1-201ENST00000323668 SMCPP49901 116 aaPredicted RBP10.69□□□□□ -0.7
TCOF1-201ENST00000323668 RBMY1FQ15415 496 aaKnown RBP10.69□□□□□ -0.7
TCOF1-201ENST00000323668 C9orf66Q5T8R8 295 aa10.68□□□□□ -0.7
TCOF1-201ENST00000323668 ZFYVE26Q68DK2 2539 aa10.68□□□□□ -0.7
TCOF1-201ENST00000323668 SPART-AS1P0CW21 52 aa10.68□□□□□ -0.7
TCOF1-201ENST00000323668 NDUFA7O95182 113 aa10.68□□□□□ -0.7
TCOF1-201ENST00000323668 ODF3L2Q3SX64 289 aa10.68□□□□□ -0.7
TCOF1-201ENST00000323668 IMUPQ9GZP8 106 aa10.68□□□□□ -0.7
TCOF1-201ENST00000323668 LAMA1P25391 3075 aa10.68□□□□□ -0.7
TCOF1-201ENST00000323668 DPH3Q96FX2 82 aa10.68□□□□□ -0.7
TCOF1-201ENST00000323668 COL27A1Q8IZC6 1860 aaPredicted RBP10.67□□□□□ -0.7
TCOF1-201ENST00000323668 FAM240AA0A1B0GVK7 77 aa10.67□□□□□ -0.7
TCOF1-201ENST00000323668 DEFB4AO15263 64 aa10.67□□□□□ -0.7
TCOF1-201ENST00000323668 SPAG11BQ08648 103 aa10.67□□□□□ -0.7
TCOF1-201ENST00000323668 Q6Q795 121 aa10.67□□□□□ -0.7
TCOF1-201ENST00000323668 SMIM1B2RUZ4 78 aa10.67□□□□□ -0.7
TCOF1-201ENST00000323668 DEFB135Q30KP9 77 aa10.67□□□□□ -0.7
TCOF1-201ENST00000323668 Q6ZSN1 163 aa10.67□□□□□ -0.7
TCOF1-201ENST00000323668 NKAPP1Q8N9T2 125 aa10.67□□□□□ -0.7
TCOF1-201ENST00000323668 NCR3O14931 201 aa10.66□□□□□ -0.7
TCOF1-201ENST00000323668 DOPEY1Q5JWR5 2465 aa10.66□□□□□ -0.7
TCOF1-201ENST00000323668 UQCRQO14949 82 aa10.66□□□□□ -0.7
TCOF1-201ENST00000323668 WFDC11Q8NEX6 87 aa10.66□□□□□ -0.7
TCOF1-201ENST00000323668 COX6A2Q02221 97 aa10.65□□□□□ -0.7
TCOF1-201ENST00000323668 LOC100131303A0A0U1RQF7 123 aa10.65□□□□□ -0.7
TCOF1-201ENST00000323668 WDFY4Q6ZS81 3184 aa10.65□□□□□ -0.7
TCOF1-201ENST00000323668 M0QXV9 152 aa10.65□□□□□ -0.7
TCOF1-201ENST00000323668 LINC00269Q8N2A0 174 aa10.65□□□□□ -0.7
TCOF1-201ENST00000323668 BEAN1Q3B7T3 259 aa10.65□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms