RNA–Protein interactions for RNA: ENST00000316097.12

SCAMP4-201, Transcript of secretory carrier membrane protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCAMP4, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-201ENST00000316097 GAGE12JA6NER3 117 aa12.58□□□□□ -0.4
SCAMP4-201ENST00000316097 GAGE7O76087 117 aa12.58□□□□□ -0.4
SCAMP4-201ENST00000316097 GAGE12FP0CL80 117 aa12.58□□□□□ -0.4
SCAMP4-201ENST00000316097 GAGE12GP0CL81 117 aa12.58□□□□□ -0.4
SCAMP4-201ENST00000316097 GAGE12IP0CL82 117 aa12.58□□□□□ -0.4
SCAMP4-201ENST00000316097 IGHV3-30-3P0DP02 117 aa12.58□□□□□ -0.4
SCAMP4-201ENST00000316097 GAGE4Q13068 117 aa12.58□□□□□ -0.4
SCAMP4-201ENST00000316097 C2orf82Q6UX34 121 aa12.58□□□□□ -0.4
SCAMP4-201ENST00000316097 WNK1Q9H4A3 2382 aa12.57□□□□□ -0.4
SCAMP4-201ENST00000316097 TRAV8-3A0A0A6YYJ7 113 aa12.57□□□□□ -0.4
SCAMP4-201ENST00000316097 ID1P41134 155 aa12.57□□□□□ -0.4
SCAMP4-201ENST00000316097 TIMM21Q9BVV7 248 aa12.57□□□□□ -0.4
SCAMP4-201ENST00000316097 SETXQ7Z333 2677 aaKnown RBP12.57□□□□□ -0.4
SCAMP4-201ENST00000316097 HIVEP1P15822 2718 aa12.56□□□□□ -0.4
SCAMP4-201ENST00000316097 I3L3M4 83 aa12.56□□□□□ -0.4
SCAMP4-201ENST00000316097 DCANP1Q8TF63 244 aa12.56□□□□□ -0.4
SCAMP4-201ENST00000316097 LITAFQ99732 161 aa12.56□□□□□ -0.4
SCAMP4-201ENST00000316097 ICOSQ9Y6W8 199 aa12.56□□□□□ -0.4
SCAMP4-201ENST00000316097 CD28P10747 220 aa12.56□□□□□ -0.4
SCAMP4-201ENST00000316097 NPC2P61916 151 aa12.56□□□□□ -0.4
SCAMP4-201ENST00000316097 Q6Q795 121 aa12.56□□□□□ -0.4
SCAMP4-201ENST00000316097 LINC01600Q96MT4 127 aa12.55□□□□□ -0.4
SCAMP4-201ENST00000316097 H7C423 109 aa12.55□□□□□ -0.4
SCAMP4-201ENST00000316097 ADAMTSL4-AS1Q5T5F5 129 aa12.55□□□□□ -0.4
SCAMP4-201ENST00000316097 LINC01006Q8NI28 216 aa12.55□□□□□ -0.4
SCAMP4-201ENST00000316097 RNASE13Q5GAN3 156 aaKnown RBP12.54□□□□□ -0.4
SCAMP4-201ENST00000316097 CEMP1Q6PRD7 247 aaPredicted RBP12.53□□□□□ -0.4
SCAMP4-201ENST00000316097 CLEC2BQ92478 149 aa12.53□□□□□ -0.4
SCAMP4-201ENST00000316097 INAFM1C9JVW0 142 aa12.53□□□□□ -0.4
SCAMP4-201ENST00000316097 C4orf3Q8WVX3 66 aa12.52□□□□□ -0.41
SCAMP4-201ENST00000316097 CITED2Q99967 270 aaPredicted RBP12.52□□□□□ -0.41
SCAMP4-201ENST00000316097 RNASE1P07998 156 aaKnown RBP12.52□□□□□ -0.41
SCAMP4-201ENST00000316097 COX6CP09669 75 aa12.52□□□□□ -0.41
SCAMP4-201ENST00000316097 SPINK13Q1W4C9 94 aa12.52□□□□□ -0.41
SCAMP4-201ENST00000316097 NDUFA12Q9UI09 145 aa12.52□□□□□ -0.41
SCAMP4-201ENST00000316097 FN1P02751 2386 aaKnown RBP12.52□□□□□ -0.41
SCAMP4-201ENST00000316097 IGHV1OR15-1A0A075B7D0 117 aa12.51□□□□□ -0.41
SCAMP4-201ENST00000316097 A8MZ25 164 aa12.51□□□□□ -0.41
SCAMP4-201ENST00000316097 IGHV3-73A0A0B4J1V6 119 aa12.5□□□□□ -0.41
SCAMP4-201ENST00000316097 H3BT86 120 aa12.5□□□□□ -0.41
SCAMP4-201ENST00000316097 MRPS36P82909 103 aaKnown RBP12.5□□□□□ -0.41
SCAMP4-201ENST00000316097 IGHV1-58A0A0C4DH39 117 aa12.5□□□□□ -0.41
SCAMP4-201ENST00000316097 HILS1P60008 231 aa12.5□□□□□ -0.41
SCAMP4-201ENST00000316097 FAM104AQ969W3 186 aa12.5□□□□□ -0.41
SCAMP4-201ENST00000316097 SPANXDQ9BXN6 97 aa12.5□□□□□ -0.41
SCAMP4-201ENST00000316097 SPANXCQ9NY87 97 aa12.5□□□□□ -0.41
SCAMP4-201ENST00000316097 MIAQ16674 131 aa12.49□□□□□ -0.41
SCAMP4-201ENST00000316097 NSD1Q96L73 2696 aaPredicted RBP12.48□□□□□ -0.41
SCAMP4-201ENST00000316097 K7EQG2 157 aa12.47□□□□□ -0.41
SCAMP4-201ENST00000316097 PYGO1Q9Y3Y4 419 aa12.47□□□□□ -0.41
SCAMP4-201ENST00000316097 LST1O00453 97 aa12.47□□□□□ -0.41
SCAMP4-201ENST00000316097 PROK1P58294 105 aa12.47□□□□□ -0.41
SCAMP4-201ENST00000316097 TMEM61Q8N0U2 210 aa12.46□□□□□ -0.41
SCAMP4-201ENST00000316097 SMIM20Q8N5G0 67 aa12.46□□□□□ -0.41
SCAMP4-201ENST00000316097 VSIG2Q96IQ7 327 aa12.46□□□□□ -0.41
SCAMP4-201ENST00000316097 DAND5Q8N907 189 aa12.46□□□□□ -0.41
SCAMP4-201ENST00000316097 HTN1P15515 57 aa12.45□□□□□ -0.42
SCAMP4-201ENST00000316097 SNRPD3P62318 126 aaKnown RBP12.45□□□□□ -0.42
SCAMP4-201ENST00000316097 TRGV11A0A075B6L2 103 aa12.45□□□□□ -0.42
SCAMP4-201ENST00000316097 CCL24O00175 119 aa12.45□□□□□ -0.42
SCAMP4-201ENST00000316097 MRPL23Q16540 153 aaKnown RBP12.44□□□□□ -0.42
SCAMP4-201ENST00000316097 MEIG1Q5JSS6 88 aa12.44□□□□□ -0.42
SCAMP4-201ENST00000316097 CHCHD5Q9BSY4 110 aa12.44□□□□□ -0.42
SCAMP4-201ENST00000316097 FAM240AA0A1B0GVK7 77 aa12.43□□□□□ -0.42
SCAMP4-201ENST00000316097 KNCNA6PVL3 124 aa12.43□□□□□ -0.42
SCAMP4-201ENST00000316097 C16orf95Q9H693 158 aa12.43□□□□□ -0.42
SCAMP4-201ENST00000316097 PEMTQ9UBM1 199 aa12.43□□□□□ -0.42
SCAMP4-201ENST00000316097 TINCRA0A1B0GVN0 87 aa12.43□□□□□ -0.42
SCAMP4-201ENST00000316097 Q9UF83 564 aa12.43□□□□□ -0.42
SCAMP4-201ENST00000316097 TNFRSF18Q9Y5U5 241 aa12.43□□□□□ -0.42
SCAMP4-201ENST00000316097 C2CD3Q4AC94 2353 aa12.42□□□□□ -0.42
SCAMP4-201ENST00000316097 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.42□□□□□ -0.42
SCAMP4-201ENST00000316097 IGKV2-29A2NJV5 120 aaPredicted RBP12.42□□□□□ -0.42
SCAMP4-201ENST00000316097 DEFB131AP59861 70 aa12.42□□□□□ -0.42
SCAMP4-201ENST00000316097 HERV-K104P63124 156 aa12.42□□□□□ -0.42
SCAMP4-201ENST00000316097 DYNLRB2Q8TF09 96 aa12.42□□□□□ -0.42
SCAMP4-201ENST00000316097 JMJD1CQ15652 2540 aa12.41□□□□□ -0.42
SCAMP4-201ENST00000316097 KRTAP10-3P60369 221 aa12.41□□□□□ -0.42
SCAMP4-201ENST00000316097 DEFB121Q5J5C9 76 aa12.41□□□□□ -0.42
SCAMP4-201ENST00000316097 DEFB114Q30KQ6 69 aa12.41□□□□□ -0.42
SCAMP4-201ENST00000316097 FAM110AQ9BQ89 295 aa12.4□□□□□ -0.42
SCAMP4-201ENST00000316097 RBMY1A1P0DJD3 496 aaKnown RBP12.4□□□□□ -0.42
SCAMP4-201ENST00000316097 RBMY1CP0DJD4 496 aa12.4□□□□□ -0.42
SCAMP4-201ENST00000316097 RBMY1FQ15415 496 aaKnown RBP12.4□□□□□ -0.42
SCAMP4-201ENST00000316097 C3orf56Q8N813 242 aa12.4□□□□□ -0.42
SCAMP4-201ENST00000316097 UBE2D4Q9Y2X8 147 aa12.4□□□□□ -0.42
SCAMP4-201ENST00000316097 CHCHD7Q9BUK0 85 aa12.39□□□□□ -0.43
SCAMP4-201ENST00000316097 TENM1Q9UKZ4 2725 aa12.39□□□□□ -0.43
SCAMP4-201ENST00000316097 PRM2P04554 102 aa12.38□□□□□ -0.43
SCAMP4-201ENST00000316097 SHISA2Q6UWI4 295 aa12.38□□□□□ -0.43
SCAMP4-201ENST00000316097 TRBV7-7A0A0K0K1E9 115 aa12.38□□□□□ -0.43
SCAMP4-201ENST00000316097 SPANXA1Q9NS26 97 aa12.38□□□□□ -0.43
SCAMP4-201ENST00000316097 CDKN2A-AS1Q9UH64 79 aa12.38□□□□□ -0.43
SCAMP4-201ENST00000316097 LINC00467Q9BRT7 94 aa12.37□□□□□ -0.43
SCAMP4-201ENST00000316097 IGHV3-38A0A0C4DH36 116 aa12.37□□□□□ -0.43
SCAMP4-201ENST00000316097 A0A0U1RRA0 63 aa12.37□□□□□ -0.43
SCAMP4-201ENST00000316097 Q6ZSN1 163 aa12.37□□□□□ -0.43
SCAMP4-201ENST00000316097 TMEM101Q96IK0 257 aa12.37□□□□□ -0.43
SCAMP4-201ENST00000316097 EDA2RQ9HAV5 297 aa12.37□□□□□ -0.43
SCAMP4-201ENST00000316097 TIMM17BO60830 172 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms