RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 Q8N7P7 452 aa10.41□□□□□ -0.74
CSPG4-201ENST00000308508 C11orf45Q8TAV5 145 aa10.41□□□□□ -0.74
CSPG4-201ENST00000308508 PYGO1Q9Y3Y4 419 aa10.41□□□□□ -0.74
CSPG4-201ENST00000308508 C2orf91Q6ZV80 131 aa10.41□□□□□ -0.74
CSPG4-201ENST00000308508 PLA2G2CQ5R387 149 aa10.41□□□□□ -0.74
CSPG4-201ENST00000308508 TRAV7A0A075B6U4 112 aa10.4□□□□□ -0.74
CSPG4-201ENST00000308508 M0QY20 66 aa10.4□□□□□ -0.74
CSPG4-201ENST00000308508 CCDC140Q96MF4 163 aa10.4□□□□□ -0.74
CSPG4-201ENST00000308508 WFDC13Q8IUB5 93 aa10.4□□□□□ -0.74
CSPG4-201ENST00000308508 MBD6Q96DN6 1003 aa10.4□□□□□ -0.74
CSPG4-201ENST00000308508 IGFL2Q6UWQ7 119 aa10.4□□□□□ -0.75
CSPG4-201ENST00000308508 HRCT1Q6UXD1 115 aa10.4□□□□□ -0.75
CSPG4-201ENST00000308508 TRBV6-8A0A0A6YYG3 113 aa10.4□□□□□ -0.75
CSPG4-201ENST00000308508 COX17Q14061 63 aa10.39□□□□□ -0.75
CSPG4-201ENST00000308508 ZNF706Q9Y5V0 76 aaPredicted RBP10.39□□□□□ -0.75
CSPG4-201ENST00000308508 PRR4Q16378 134 aa10.39□□□□□ -0.75
CSPG4-201ENST00000308508 TECTAO75443 2155 aa10.39□□□□□ -0.75
CSPG4-201ENST00000308508 ZFP36P26651 326 aaKnown RBP10.39□□□□□ -0.75
CSPG4-201ENST00000308508 FAM30AQ9NZY2 134 aa10.39□□□□□ -0.75
CSPG4-201ENST00000308508 PTPN13Q12923 2485 aa10.38□□□□□ -0.75
CSPG4-201ENST00000308508 DCANP1Q8TF63 244 aa10.38□□□□□ -0.75
CSPG4-201ENST00000308508 FAM19A5Q7Z5A7 132 aaPredicted RBP10.38□□□□□ -0.75
CSPG4-201ENST00000308508 RNF185Q96GF1 192 aa10.38□□□□□ -0.75
CSPG4-201ENST00000308508 YPEL4Q96NS1 127 aa10.38□□□□□ -0.75
CSPG4-201ENST00000308508 XAGE1AQ9HD64 81 aa10.37□□□□□ -0.75
CSPG4-201ENST00000308508 CLUHP3Q96NS8 147 aa10.37□□□□□ -0.75
CSPG4-201ENST00000308508 Q6ZQY7 126 aa10.37□□□□□ -0.75
CSPG4-201ENST00000308508 WFDC10AQ9H1F0 79 aa10.37□□□□□ -0.75
CSPG4-201ENST00000308508 GPR179Q6PRD1 2367 aa10.37□□□□□ -0.75
CSPG4-201ENST00000308508 SMIM11BQ8TCY0 68 aa10.36□□□□□ -0.75
CSPG4-201ENST00000308508 M0R378 163 aa10.36□□□□□ -0.75
CSPG4-201ENST00000308508 A6NDX4 124 aa10.36□□□□□ -0.75
CSPG4-201ENST00000308508 LRCOL1A6NCL2 159 aa10.35□□□□□ -0.75
CSPG4-201ENST00000308508 EBI3Q14213 229 aa10.35□□□□□ -0.75
CSPG4-201ENST00000308508 TRBV6-4A0A1B0GX49 114 aa10.35□□□□□ -0.75
CSPG4-201ENST00000308508 PIP4P1Q86T03 277 aa10.35□□□□□ -0.75
CSPG4-201ENST00000308508 LINC00574Q9H8X3 128 aa10.35□□□□□ -0.75
CSPG4-201ENST00000308508 C22orf34Q6ZV56 151 aa10.34□□□□□ -0.75
CSPG4-201ENST00000308508 SYCNQ0VAF6 134 aa10.34□□□□□ -0.75
CSPG4-201ENST00000308508 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.34□□□□□ -0.75
CSPG4-201ENST00000308508 K7EQG2 157 aa10.34□□□□□ -0.75
CSPG4-201ENST00000308508 SONP18583 2426 aaKnown RBP10.34□□□□□ -0.75
CSPG4-201ENST00000308508 IGKV2-28A0A075B6P5 120 aa10.34□□□□□ -0.75
CSPG4-201ENST00000308508 IGKV2D-28P01615 120 aa10.34□□□□□ -0.75
CSPG4-201ENST00000308508 MUC7Q8TAX7 377 aa10.34□□□□□ -0.75
CSPG4-201ENST00000308508 LINC00526Q96FQ7 95 aa10.33□□□□□ -0.76
CSPG4-201ENST00000308508 UBE2D2P62837 147 aa10.33□□□□□ -0.76
CSPG4-201ENST00000308508 CD164L2Q6UWJ8 174 aa10.33□□□□□ -0.76
CSPG4-201ENST00000308508 NRACQ8N912 160 aa10.33□□□□□ -0.76
CSPG4-201ENST00000308508 EXPH5Q8NEV8 1989 aa10.33□□□□□ -0.76
CSPG4-201ENST00000308508 CRIP1P50238 77 aa10.33□□□□□ -0.76
CSPG4-201ENST00000308508 C7orf33Q8WU49 177 aa10.33□□□□□ -0.76
CSPG4-201ENST00000308508 ANKHD1Q8IWZ3 2542 aaKnown RBP10.33□□□□□ -0.76
CSPG4-201ENST00000308508 HIVEP2P31629 2446 aa10.33□□□□□ -0.76
CSPG4-201ENST00000308508 TET2Q6N021 2002 aaPredicted RBP10.33□□□□□ -0.76
CSPG4-201ENST00000308508 SPINK6Q6UWN8 80 aa10.32□□□□□ -0.76
CSPG4-201ENST00000308508 DAZAP2Q15038 168 aaPredicted RBP10.32□□□□□ -0.76
CSPG4-201ENST00000308508 LY6LH3BQJ8 138 aa10.32□□□□□ -0.76
CSPG4-201ENST00000308508 PRYO14603 147 aa10.31□□□□□ -0.76
CSPG4-201ENST00000308508 ODF3BA8MYP8 253 aa10.31□□□□□ -0.76
CSPG4-201ENST00000308508 IGF2-ASQ6U949 168 aa10.31□□□□□ -0.76
CSPG4-201ENST00000308508 TSHBP01222 138 aa10.31□□□□□ -0.76
CSPG4-201ENST00000308508 IGF1P05019 195 aa10.31□□□□□ -0.76
CSPG4-201ENST00000308508 IGHV4-30-4P0DP06 118 aa10.31□□□□□ -0.76
CSPG4-201ENST00000308508 IGHV4-31P0DP07 118 aa10.31□□□□□ -0.76
CSPG4-201ENST00000308508 DEFB131BA0A096LNP1 70 aa10.3□□□□□ -0.76
CSPG4-201ENST00000308508 HILS1P60008 231 aa10.3□□□□□ -0.76
CSPG4-201ENST00000308508 ZNF73O43830 326 aaPredicted RBP10.3□□□□□ -0.76
CSPG4-201ENST00000308508 SOSTDC1Q6X4U4 206 aa10.29□□□□□ -0.76
CSPG4-201ENST00000308508 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.29□□□□□ -0.76
CSPG4-201ENST00000308508 RETNQ9HD89 108 aa10.29□□□□□ -0.76
CSPG4-201ENST00000308508 DNAJC9-AS1A6NH13 148 aa10.29□□□□□ -0.76
CSPG4-201ENST00000308508 TNFRSF13BO14836 293 aaPredicted RBP10.29□□□□□ -0.76
CSPG4-201ENST00000308508 DEFB114Q30KQ6 69 aa10.29□□□□□ -0.76
CSPG4-201ENST00000308508 UBE2D4Q9Y2X8 147 aa10.28□□□□□ -0.76
CSPG4-201ENST00000308508 ZNF295-AS1Q8N0V1 137 aa10.28□□□□□ -0.76
CSPG4-201ENST00000308508 UBE2D1P51668 147 aa10.28□□□□□ -0.76
CSPG4-201ENST00000308508 VPREB1P12018 145 aa10.28□□□□□ -0.76
CSPG4-201ENST00000308508 NTM-AS1Q6ZSK4 140 aa10.28□□□□□ -0.76
CSPG4-201ENST00000308508 ADORA2A-AS1P86434 159 aa10.28□□□□□ -0.76
CSPG4-201ENST00000308508 Q6ZVQ6 151 aa10.28□□□□□ -0.76
CSPG4-201ENST00000308508 IGLV4-69A0A075B6H9 119 aa10.27□□□□□ -0.76
CSPG4-201ENST00000308508 C10orf25Q5T742 122 aa10.27□□□□□ -0.76
CSPG4-201ENST00000308508 TRBV7-6A0A0J9YX20 115 aa10.27□□□□□ -0.77
CSPG4-201ENST00000308508 A8MZ25 164 aa10.27□□□□□ -0.77
CSPG4-201ENST00000308508 Q6ZS46 218 aa10.27□□□□□ -0.77
CSPG4-201ENST00000308508 CELA1Q9UNI1 258 aa10.26□□□□□ -0.77
CSPG4-201ENST00000308508 IGLV2-11P01706 119 aa10.26□□□□□ -0.77
CSPG4-201ENST00000308508 Q8N976 141 aa10.26□□□□□ -0.77
CSPG4-201ENST00000308508 NAV3Q8IVL0 2385 aa10.26□□□□□ -0.77
CSPG4-201ENST00000308508 EIF4EBP1Q13541 118 aaPredicted RBP10.26□□□□□ -0.77
CSPG4-201ENST00000308508 PPDPFQ9H3Y8 114 aa10.25□□□□□ -0.77
CSPG4-201ENST00000308508 BRWD1-AS2P59051 145 aa10.25□□□□□ -0.77
CSPG4-201ENST00000308508 UBE2D3P61077 147 aa10.25□□□□□ -0.77
CSPG4-201ENST00000308508 LINC00208Q96KT6 92 aa10.25□□□□□ -0.77
CSPG4-201ENST00000308508 LOC107984640A0A0U1RRK4 108 aa10.24□□□□□ -0.77
CSPG4-201ENST00000308508 Q8IZM0 81 aa10.24□□□□□ -0.77
CSPG4-201ENST00000308508 PROK1P58294 105 aa10.24□□□□□ -0.77
CSPG4-201ENST00000308508 OXLD1Q5BKU9 147 aa10.24□□□□□ -0.77
CSPG4-201ENST00000308508 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms