RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 LITAFQ99732 161 aa11.87□□□□□ -0.51
HOXD3-201ENST00000249440 ODF3L2Q3SX64 289 aa11.86□□□□□ -0.51
HOXD3-201ENST00000249440 Q6ZUT4 128 aa11.86□□□□□ -0.51
HOXD3-201ENST00000249440 GEMIN7Q9H840 131 aaKnown RBP11.86□□□□□ -0.51
HOXD3-201ENST00000249440 PRSS2P07478 247 aa11.86□□□□□ -0.51
HOXD3-201ENST00000249440 TEX29Q8N6K0 151 aa11.86□□□□□ -0.51
HOXD3-201ENST00000249440 PPDPFLQ8WWR9 84 aa11.86□□□□□ -0.51
HOXD3-201ENST00000249440 H7C2G1 150 aa11.85□□□□□ -0.51
HOXD3-201ENST00000249440 Q1RN00 199 aa11.85□□□□□ -0.51
HOXD3-201ENST00000249440 SPANXDQ9BXN6 97 aa11.85□□□□□ -0.51
HOXD3-201ENST00000249440 SPANXCQ9NY87 97 aa11.85□□□□□ -0.51
HOXD3-201ENST00000249440 WNK1Q9H4A3 2382 aa11.85□□□□□ -0.51
HOXD3-201ENST00000249440 SPINK8P0C7L1 97 aa11.85□□□□□ -0.51
HOXD3-201ENST00000249440 DGAT2L7PQ6IED9 249 aa11.85□□□□□ -0.51
HOXD3-201ENST00000249440 NF1P21359 2839 aa11.84□□□□□ -0.51
HOXD3-201ENST00000249440 IGHV3OR16-12A0A075B7B8 117 aa11.83□□□□□ -0.51
HOXD3-201ENST00000249440 FHL3Q13643 280 aa11.83□□□□□ -0.52
HOXD3-201ENST00000249440 ZFAND6Q6FIF0 208 aa11.83□□□□□ -0.52
HOXD3-201ENST00000249440 C1orf158Q8N1D5 194 aa11.83□□□□□ -0.52
HOXD3-201ENST00000249440 SVIPQ8NHG7 77 aa11.83□□□□□ -0.52
HOXD3-201ENST00000249440 MTORP42345 2549 aa11.83□□□□□ -0.52
HOXD3-201ENST00000249440 HIVEP1P15822 2718 aa11.83□□□□□ -0.52
HOXD3-201ENST00000249440 DNAJC9-AS1A6NH13 148 aa11.82□□□□□ -0.52
HOXD3-201ENST00000249440 CYSRT1A8MQ03 144 aa11.82□□□□□ -0.52
HOXD3-201ENST00000249440 TIRAPP58753 221 aa11.82□□□□□ -0.52
HOXD3-201ENST00000249440 ADAMTSL4-AS1Q5T5F5 129 aa11.82□□□□□ -0.52
HOXD3-201ENST00000249440 TRGV1A0A0A0MS02 117 aa11.82□□□□□ -0.52
HOXD3-201ENST00000249440 A8MZ25 164 aa11.82□□□□□ -0.52
HOXD3-201ENST00000249440 SLC25A20O43772 301 aa11.82□□□□□ -0.52
HOXD3-201ENST00000249440 MIAQ16674 131 aa11.82□□□□□ -0.52
HOXD3-201ENST00000249440 CARD19Q96LW7 228 aa11.82□□□□□ -0.52
HOXD3-201ENST00000249440 TRBV30A0A0K0K1B3 111 aa11.81□□□□□ -0.52
HOXD3-201ENST00000249440 M0QXV9 152 aa11.81□□□□□ -0.52
HOXD3-201ENST00000249440 CCL24O00175 119 aa11.81□□□□□ -0.52
HOXD3-201ENST00000249440 C11orf44Q8N8P7 122 aa11.81□□□□□ -0.52
HOXD3-201ENST00000249440 IL17DQ8TAD2 202 aa11.81□□□□□ -0.52
HOXD3-201ENST00000249440 CDKN2A-AS1Q9UH64 79 aa11.81□□□□□ -0.52
HOXD3-201ENST00000249440 IGLV5-45A0A087WSX0 123 aa11.81□□□□□ -0.52
HOXD3-201ENST00000249440 A0A1W2PRX2 142 aa11.81□□□□□ -0.52
HOXD3-201ENST00000249440 C9JAW5 83 aa11.81□□□□□ -0.52
HOXD3-201ENST00000249440 ATXN8Q156A1 80 aa11.8□□□□□ -0.52
HOXD3-201ENST00000249440 ANKRD29Q8N6D5 301 aa11.8□□□□□ -0.52
HOXD3-201ENST00000249440 YAE1D1Q9NRH1 226 aa11.8□□□□□ -0.52
HOXD3-201ENST00000249440 RPL36AP83881 106 aaKnown RBP11.8□□□□□ -0.52
HOXD3-201ENST00000249440 RPL36ALQ969Q0 106 aaKnown RBP11.8□□□□□ -0.52
HOXD3-201ENST00000249440 TRBV10-1A0A0K0K1A3 114 aa11.79□□□□□ -0.52
HOXD3-201ENST00000249440 TIMM17BO60830 172 aa11.79□□□□□ -0.52
HOXD3-201ENST00000249440 RNF183Q96D59 192 aa11.79□□□□□ -0.52
HOXD3-201ENST00000249440 SMR3AQ99954 134 aa11.79□□□□□ -0.52
HOXD3-201ENST00000249440 HERVK_113P63121 156 aa11.78□□□□□ -0.52
HOXD3-201ENST00000249440 CDIP1Q9H305 208 aa11.78□□□□□ -0.52
HOXD3-201ENST00000249440 TMEM101Q96IK0 257 aa11.78□□□□□ -0.52
HOXD3-201ENST00000249440 K7EQD1 137 aa11.77□□□□□ -0.52
HOXD3-201ENST00000249440 DAZ2Q13117 558 aaKnown RBP11.77□□□□□ -0.52
HOXD3-201ENST00000249440 DAZ4Q86SG3 579 aaKnown RBP11.77□□□□□ -0.52
HOXD3-201ENST00000249440 DAZ3Q9NR90 486 aaKnown RBP11.77□□□□□ -0.52
HOXD3-201ENST00000249440 NDUFA1O15239 70 aa11.77□□□□□ -0.53
HOXD3-201ENST00000249440 TRIAP1O43715 76 aa11.77□□□□□ -0.53
HOXD3-201ENST00000249440 IFITM1P13164 125 aa11.77□□□□□ -0.53
HOXD3-201ENST00000249440 CSDC2Q9Y534 153 aaKnown RBP11.77□□□□□ -0.53
HOXD3-201ENST00000249440 CIRBPQ14011 172 aaKnown RBP11.76□□□□□ -0.53
HOXD3-201ENST00000249440 Q6ZTI0 123 aa11.76□□□□□ -0.53
HOXD3-201ENST00000249440 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.76□□□□□ -0.53
HOXD3-201ENST00000249440 TRAV4A0A0B4J268 109 aa11.76□□□□□ -0.53
HOXD3-201ENST00000249440 COX6CP09669 75 aa11.76□□□□□ -0.53
HOXD3-201ENST00000249440 CMC4P56277 68 aaPredicted RBP11.76□□□□□ -0.53
HOXD3-201ENST00000249440 NPC2P61916 151 aa11.76□□□□□ -0.53
HOXD3-201ENST00000249440 COX6A2Q02221 97 aa11.76□□□□□ -0.53
HOXD3-201ENST00000249440 LINC01620Q4KN68 170 aa11.76□□□□□ -0.53
HOXD3-201ENST00000249440 LINC00242Q5T6M2 205 aa11.76□□□□□ -0.53
HOXD3-201ENST00000249440 ESM1Q9NQ30 184 aa11.76□□□□□ -0.53
HOXD3-201ENST00000249440 LINC00694P0DN24 101 aa11.75□□□□□ -0.53
HOXD3-201ENST00000249440 ICOSQ9Y6W8 199 aa11.75□□□□□ -0.53
HOXD3-201ENST00000249440 KRTAP1-1Q07627 177 aa11.75□□□□□ -0.53
HOXD3-201ENST00000249440 FAM19A3Q7Z5A8 133 aa11.75□□□□□ -0.53
HOXD3-201ENST00000249440 CITED2Q99967 270 aaPredicted RBP11.75□□□□□ -0.53
HOXD3-201ENST00000249440 IGLV5-39A0A0G2JS06 123 aa11.74□□□□□ -0.53
HOXD3-201ENST00000249440 TMEM262E9PQX1 116 aa11.74□□□□□ -0.53
HOXD3-201ENST00000249440 NTM-AS1Q6ZSK4 140 aa11.73□□□□□ -0.53
HOXD3-201ENST00000249440 LINC01600Q96MT4 127 aa11.73□□□□□ -0.53
HOXD3-201ENST00000249440 NOTCH3Q9UM47 2321 aa11.73□□□□□ -0.53
HOXD3-201ENST00000249440 NOP10Q9NPE3 64 aaKnown RBP11.72□□□□□ -0.53
HOXD3-201ENST00000249440 TRBV10-2A0A0K0K1G8 114 aa11.72□□□□□ -0.53
HOXD3-201ENST00000249440 CIDEAO60543 219 aa11.72□□□□□ -0.53
HOXD3-201ENST00000249440 Q9H8V8 135 aa11.72□□□□□ -0.53
HOXD3-201ENST00000249440 GAGE12JA6NER3 117 aa11.71□□□□□ -0.53
HOXD3-201ENST00000249440 GAGE4Q13068 117 aa11.71□□□□□ -0.53
HOXD3-201ENST00000249440 GAGE5Q13069 117 aa11.71□□□□□ -0.53
HOXD3-201ENST00000249440 DAND5Q8N907 189 aa11.71□□□□□ -0.53
HOXD3-201ENST00000249440 TEP1Q99973 2627 aaKnown RBP11.71□□□□□ -0.53
HOXD3-201ENST00000249440 TRAV13-1A0A0B4J241 112 aa11.71□□□□□ -0.54
HOXD3-201ENST00000249440 CDC42SE2Q9NRR3 84 aa11.71□□□□□ -0.54
HOXD3-201ENST00000249440 NDUFA7O95182 113 aa11.7□□□□□ -0.54
HOXD3-201ENST00000249440 XGP55808 180 aa11.7□□□□□ -0.54
HOXD3-201ENST00000249440 LINC01006Q8NI28 216 aa11.7□□□□□ -0.54
HOXD3-201ENST00000249440 C16orf74Q96GX8 76 aa11.7□□□□□ -0.54
HOXD3-201ENST00000249440 A0A1B0GV72 72 aa11.7□□□□□ -0.54
HOXD3-201ENST00000249440 SMIM1B2RUZ4 78 aa11.7□□□□□ -0.54
HOXD3-201ENST00000249440 NTN5Q8WTR8 489 aaPredicted RBP11.7□□□□□ -0.54
HOXD3-201ENST00000249440 NIPBLQ6KC79 2804 aaeCLIP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms