RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 SBK1Q52WX2 424 aa14.71□□□□□ -0.05
LINC00339-213ENST00000642137 ANGEL2Q5VTE6 544 aaKnown RBP14.71□□□□□ -0.05
LINC00339-213ENST00000642137 APOBEC3FQ8IUX4 373 aaKnown RBP14.71□□□□□ -0.05
LINC00339-213ENST00000642137 MAPKAPK5Q8IW41 473 aa14.71□□□□□ -0.05
LINC00339-213ENST00000642137 FAM151AQ8WW52 585 aa14.71□□□□□ -0.05
LINC00339-213ENST00000642137 DCPSQ96C86 337 aaKnown RBP14.71□□□□□ -0.05
LINC00339-213ENST00000642137 USP26Q9BXU7 913 aa14.71□□□□□ -0.05
LINC00339-213ENST00000642137 OSBPL5Q9H0X9 879 aaPredicted RBP14.71□□□□□ -0.05
LINC00339-213ENST00000642137 VEZTQ9HBM0 779 aa14.71□□□□□ -0.05
LINC00339-213ENST00000642137 DDX4Q9NQI0 724 aaKnown RBP14.71□□□□□ -0.05
LINC00339-213ENST00000642137 CTNNA3Q9UI47 895 aa14.71□□□□□ -0.05
LINC00339-213ENST00000642137 U3KPZ7 1027 aaPredicted RBP14.71□□□□□ -0.05
LINC00339-213ENST00000642137 ZMYM6O95789 1325 aa14.7□□□□□ -0.06
LINC00339-213ENST00000642137 FLT1P17948 1338 aa14.7□□□□□ -0.06
LINC00339-213ENST00000642137 TCP10L2B9ZVM9 353 aa14.7□□□□□ -0.06
LINC00339-213ENST00000642137 CACNB3P54284 484 aa14.7□□□□□ -0.06
LINC00339-213ENST00000642137 PICALMQ13492 652 aa14.7□□□□□ -0.06
LINC00339-213ENST00000642137 EAPPQ56P03 285 aaPredicted RBP14.7□□□□□ -0.06
LINC00339-213ENST00000642137 NAPBQ9H115 298 aa14.7□□□□□ -0.06
LINC00339-213ENST00000642137 DHX36Q9H2U1 1008 aaKnown RBP14.7□□□□□ -0.06
LINC00339-213ENST00000642137 EPB41L4AQ9HCS5 686 aaPredicted RBP14.7□□□□□ -0.06
LINC00339-213ENST00000642137 NMRK2Q9NPI5 230 aa14.7□□□□□ -0.06
LINC00339-213ENST00000642137 ASTN2O75129 1339 aaPredicted RBP14.69□□□□□ -0.06
LINC00339-213ENST00000642137 MYH1P12882 1939 aa14.69□□□□□ -0.06
LINC00339-213ENST00000642137 USP17L12C9JPN9 530 aa14.69□□□□□ -0.06
LINC00339-213ENST00000642137 USP17L21D6R901 530 aa14.69□□□□□ -0.06
LINC00339-213ENST00000642137 POLR3DP05423 398 aaPredicted RBP14.69□□□□□ -0.06
LINC00339-213ENST00000642137 TDO2P48775 406 aa14.69□□□□□ -0.06
LINC00339-213ENST00000642137 TCP10Q12799 353 aa14.69□□□□□ -0.06
LINC00339-213ENST00000642137 CTR9Q6PD62 1173 aa14.69□□□□□ -0.06
LINC00339-213ENST00000642137 TTC6Q86TZ1 520 aa14.69□□□□□ -0.06
LINC00339-213ENST00000642137 ZFPM1Q8IX07 1006 aa14.69□□□□□ -0.06
LINC00339-213ENST00000642137 ZNF526Q8TF50 670 aaPredicted RBP14.69□□□□□ -0.06
LINC00339-213ENST00000642137 GPBP1L1Q9HC44 474 aaPredicted RBP14.69□□□□□ -0.06
LINC00339-213ENST00000642137 MCM9Q9NXL9 1143 aa14.69□□□□□ -0.06
LINC00339-213ENST00000642137 GGA3Q9NZ52 723 aa14.69□□□□□ -0.06
LINC00339-213ENST00000642137 ARPP21Q9UBL0 812 aaPredicted RBP14.69□□□□□ -0.06
LINC00339-213ENST00000642137 PPP2R3BQ9Y5P8 575 aa14.69□□□□□ -0.06
LINC00339-213ENST00000642137 RASA3Q14644 834 aa14.68□□□□□ -0.06
LINC00339-213ENST00000642137 NECTIN1Q15223 517 aa14.68□□□□□ -0.06
LINC00339-213ENST00000642137 C12orf60Q5U649 245 aa14.68□□□□□ -0.06
LINC00339-213ENST00000642137 AMOTL1Q8IY63 956 aa14.68□□□□□ -0.06
LINC00339-213ENST00000642137 DEFB129Q9H1M3 183 aa14.68□□□□□ -0.06
LINC00339-213ENST00000642137 CLEC11AQ9Y240 323 aa14.68□□□□□ -0.06
LINC00339-213ENST00000642137 RBM8AQ9Y5S9 174 aaKnown RBP14.68□□□□□ -0.06
LINC00339-213ENST00000642137 CNTNAP1P78357 1384 aa14.68□□□□□ -0.06
LINC00339-213ENST00000642137 BAZ2AQ9UIF9 1905 aaKnown RBP14.68□□□□□ -0.06
LINC00339-213ENST00000642137 ZNF213O14771 459 aa14.67□□□□□ -0.06
LINC00339-213ENST00000642137 YY1P25490 414 aa14.67□□□□□ -0.06
LINC00339-213ENST00000642137 IMMTQ16891 758 aaKnown RBP14.67□□□□□ -0.06
LINC00339-213ENST00000642137 CDC37L1Q7L3B6 337 aa14.67□□□□□ -0.06
LINC00339-213ENST00000642137 SH3BP5LQ7L8J4 393 aa14.67□□□□□ -0.06
LINC00339-213ENST00000642137 LDHDQ86WU2 507 aa14.67□□□□□ -0.06
LINC00339-213ENST00000642137 FOXP4Q8IVH2 680 aaPredicted RBP14.67□□□□□ -0.06
LINC00339-213ENST00000642137 SULF1Q8IWU6 871 aa14.67□□□□□ -0.06
LINC00339-213ENST00000642137 PI4KBQ9UBF8 816 aa14.67□□□□□ -0.06
LINC00339-213ENST00000642137 ANAPC4Q9UJX5 808 aa14.67□□□□□ -0.06
LINC00339-213ENST00000642137 TAOK2Q9UL54 1235 aa14.67□□□□□ -0.06
LINC00339-213ENST00000642137 PALD1Q9ULE6 856 aa14.67□□□□□ -0.06
LINC00339-213ENST00000642137 COL2A1P02458 1487 aaPredicted RBP14.67□□□□□ -0.06
LINC00339-213ENST00000642137 NAV1Q8NEY1 1877 aa14.66□□□□□ -0.06
LINC00339-213ENST00000642137 ATRNL1Q5VV63 1379 aa14.66□□□□□ -0.06
LINC00339-213ENST00000642137 DDTLA6NHG4 134 aaPredicted RBP14.66□□□□□ -0.06
LINC00339-213ENST00000642137 MINDY4BA8MYZ0 360 aa14.66□□□□□ -0.06
LINC00339-213ENST00000642137 HLA-DOAP06340 250 aa14.66□□□□□ -0.06
LINC00339-213ENST00000642137 HSPA4P34932 840 aa14.66□□□□□ -0.06
LINC00339-213ENST00000642137 RNF20Q5VTR2 975 aa14.66□□□□□ -0.06
LINC00339-213ENST00000642137 ZSCAN29Q8IWY8 852 aaPredicted RBP14.66□□□□□ -0.06
LINC00339-213ENST00000642137 KCNB2Q92953 911 aa14.66□□□□□ -0.06
LINC00339-213ENST00000642137 TMEM39BQ9GZU3 492 aa14.66□□□□□ -0.06
LINC00339-213ENST00000642137 SAP30BPQ9UHR5 308 aaKnown RBP14.66□□□□□ -0.06
LINC00339-213ENST00000642137 POTEIP0CG38 1075 aa14.65□□□□□ -0.06
LINC00339-213ENST00000642137 POTEJP0CG39 1038 aa14.65□□□□□ -0.06
LINC00339-213ENST00000642137 MCCP23508 829 aa14.65□□□□□ -0.06
LINC00339-213ENST00000642137 PLCD1P51178 756 aa14.65□□□□□ -0.06
LINC00339-213ENST00000642137 MAP3K10Q02779 954 aa14.65□□□□□ -0.06
LINC00339-213ENST00000642137 PPARAQ07869 468 aa14.65□□□□□ -0.06
LINC00339-213ENST00000642137 TSGA10IPQ3SY00 556 aa14.65□□□□□ -0.06
LINC00339-213ENST00000642137 CREB3L3Q68CJ9 461 aa14.65□□□□□ -0.06
LINC00339-213ENST00000642137 KRT26Q7Z3Y9 468 aa14.65□□□□□ -0.06
LINC00339-213ENST00000642137 USP48Q86UV5 1035 aa14.65□□□□□ -0.06
LINC00339-213ENST00000642137 METTL16Q86W50 562 aaKnown RBP14.65□□□□□ -0.06
LINC00339-213ENST00000642137 TEPSINQ96N21 525 aa14.65□□□□□ -0.06
LINC00339-213ENST00000642137 EHD4Q9H223 541 aa14.65□□□□□ -0.06
LINC00339-213ENST00000642137 UPF2Q9HAU5 1272 aaKnown RBP14.65□□□□□ -0.06
LINC00339-213ENST00000642137 SCAF8Q9UPN6 1271 aaKnown RBP14.65□□□□□ -0.06
LINC00339-213ENST00000642137 KIF3CO14782 793 aa14.64□□□□□ -0.07
LINC00339-213ENST00000642137 SLC27A2O14975 620 aa14.64□□□□□ -0.07
LINC00339-213ENST00000642137 TBC1D12O60347 775 aa14.64□□□□□ -0.07
LINC00339-213ENST00000642137 SLC3A2P08195 630 aaKnown RBP14.64□□□□□ -0.07
LINC00339-213ENST00000642137 CYP21A2P08686 494 aa14.64□□□□□ -0.07
LINC00339-213ENST00000642137 CYP2D6P10635 497 aa14.64□□□□□ -0.07
LINC00339-213ENST00000642137 SUPT20HL1Q3ZLR7 823 aa14.64□□□□□ -0.07
LINC00339-213ENST00000642137 HOOK2Q96ED9 719 aa14.64□□□□□ -0.07
LINC00339-213ENST00000642137 CYP2D7A0A087X1C5 515 aa14.63□□□□□ -0.07
LINC00339-213ENST00000642137 FGRP09769 529 aa14.63□□□□□ -0.07
LINC00339-213ENST00000642137 PCP11498 1178 aaKnown RBP14.63□□□□□ -0.07
LINC00339-213ENST00000642137 CTDSPL2Q05D32 466 aa14.63□□□□□ -0.07
LINC00339-213ENST00000642137 GABPAQ06546 454 aa14.63□□□□□ -0.07
LINC00339-213ENST00000642137 NBPF12Q5TAG4 269 aaPredicted RBP14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms