RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 UBL4BQ8N7F7 174 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 IGSF22Q8N9C0 903 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 TUBA8Q9NY65 449 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-220ENST00000641603 TRIM75PA6NK02 468 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 LMOD1P29536 600 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-220ENST00000641603 CUL4AQ13619 759 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 TMED8Q6PL24 325 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-220ENST00000641603 BRF1Q92994 677 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 VTI1AQ96AJ9 217 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 PPP1R13BQ96KQ4 1090 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-220ENST00000641603 PRDM4Q9UKN5 801 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 SND1Q7KZF4 910 aaKnown RBP eCLIP5.2□□□□□ -1.58
SCN1A-220ENST00000641603 RIC3Q7Z5B4 369 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 STK26Q9P289 416 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 DCTN3O75935 186 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 EIF2S1P05198 315 aaKnown RBP5.2□□□□□ -1.58
SCN1A-220ENST00000641603 CCT5P48643 541 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 CLCN6P51797 869 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 RRS1Q15050 365 aaKnown RBP5.2□□□□□ -1.58
SCN1A-220ENST00000641603 PLEKHO1Q53GL0 409 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-220ENST00000641603 DENND2CQ68D51 928 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 C1orf115Q9H7X2 142 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 FAM169AQ9Y6X4 670 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 ABCC5O15440 1437 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 CCDC194A0A1B0GVG4 234 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 CHMLP26374 656 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 ESRRGP62508 458 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 THUMPD2Q9BTF0 503 aaKnown RBP5.2□□□□□ -1.58
SCN1A-220ENST00000641603 OSBPL5Q9H0X9 879 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-220ENST00000641603 ZSWIM4Q9H7M6 989 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 MAGEF1Q9HAY2 307 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 CALM1P0DP23 149 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 CALM2P0DP24 149 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 CALM3P0DP25 149 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 APBB1IPQ7Z5R6 666 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-220ENST00000641603 DHX37Q8IY37 1157 aaKnown RBP5.2□□□□□ -1.58
SCN1A-220ENST00000641603 NR1H3Q13133 447 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 TMX1Q9H3N1 280 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 SYNRGQ9UMZ2 1314 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 SFSWAPQ12872 951 aaKnown RBP5.2□□□□□ -1.58
SCN1A-220ENST00000641603 SEL1L2Q5TEA6 688 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 GRAMD1AQ96CP6 724 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 RTL9Q8NET4 1388 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 CLASP1Q7Z460 1538 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 UBA7P41226 1012 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 SCINQ9Y6U3 715 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 ASXL2Q76L83 1435 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 GRIN2BQ13224 1484 aa5.2□□□□□ -1.58
SCN1A-220ENST00000641603 I3L4J1 428 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 STXBP3O00186 592 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 MEFVO15553 781 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 GNAQP50148 359 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 KRT71Q3SY84 523 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 CCDC14Q49A88 953 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 GDPD2Q9HCC8 539 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 LZTFL1Q9NQ48 299 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 PUF60Q9UHX1 559 aaKnown RBP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 SPECC1L-ADORA2AF8WAN1 911 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 SEMA3EO15041 775 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 UBLCP1Q8WVY7 318 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 PTPRGP23470 1445 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 TRAPPC8Q9Y2L5 1435 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 GOLGA8AA7E2F4 631 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 CHGBP05060 677 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 IBSPP21815 317 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 LGSNQ5TDP6 509 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 ADALQ6DHV7 355 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 MCF2L2Q86YR7 1114 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 KRT23Q9C075 422 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 SLC52A1Q9NWF4 448 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 IL1RAPL1Q9NZN1 696 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 TPX2Q9ULW0 747 aaKnown RBP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 UBXN1Q04323 297 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 RRAGBQ5VZM2 374 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 CC2D1AQ6P1N0 951 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 ZNF449Q6P9G9 518 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 GCC2Q8IWJ2 1684 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 ZNF644Q9H582 1327 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 GAS8O95995 478 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 RFC1P35251 1148 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 ANKRD20A3Q5VUR7 823 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 TTLL7Q6ZT98 887 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 GAS2L3Q86XJ1 694 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 ZNF280CQ8ND82 737 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 FERMT2Q96AC1 680 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 CEP126Q9P2H0 1117 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 ANKRD20A4Q4UJ75 823 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 ANKRD20A8PQ5CZ79 823 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 ANKRD20A2Q5SQ80 823 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 ANKRD20A1Q5TYW2 823 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 VPS37DQ86XT2 251 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 ABCA10Q8WWZ4 1543 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 METAP2P50579 478 aaKnown RBP eCLIP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 FOSBP53539 338 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 CASP8Q14790 479 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 TAF11Q15544 211 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 ADRM1Q16186 407 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 GRK7Q8WTQ7 553 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms