RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 OSCP1Q8WVF1 389 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 ZNF219Q9P2Y4 722 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 RASAL2Q9UJF2 1139 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 MEIS1O00470 390 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 PTCD1O75127 700 aaKnown RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 SUN1O94901 812 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 GFAPP14136 432 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 ERCC3P19447 782 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 SETDB1Q15047 1291 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 PODNQ7Z5L7 613 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 NBPF15Q8N660 670 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 JPH2Q9BR39 696 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 VCX3AQ9NNX9 186 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 HYOU1Q9Y4L1 999 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 SDK1Q7Z5N4 2213 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 ZFXP17010 805 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 HSP90AA5PQ58FG0 334 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 HAUS6Q7Z4H7 955 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 NLRP7Q8WX94 980 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 TSC1Q92574 1164 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 RPGRIP1Q96KN7 1286 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 FMN1Q68DA7 1419 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 GTPBP6O43824 516 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 DNAJC8O75937 253 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 KRT38O76015 456 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 TUBBP07437 444 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 HSPA8P11142 646 aaKnown RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 CEBPZQ03701 1054 aaKnown RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 TRIM60Q495X7 471 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 BSDC1Q9NW68 430 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 MKL2Q9ULH7 1088 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 PTPRCP08575 1304 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 P4HBP07237 508 aaKnown RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 CIITAP33076 1130 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 CKAP4Q07065 602 aaKnown RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 ZKSCAN2Q63HK3 967 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 NAP1L4Q99733 375 aaKnown RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 MTUS1Q9ULD2 1270 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 LRFN2Q9ULH4 789 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 OATP04181 439 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 HVCN1Q96D96 273 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 BAG1Q99933 345 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 WDR33Q9C0J8 1336 aaKnown RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 PSMD14O00487 310 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 XPAP23025 273 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC40Q4G0X9 1142 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 COLEC12Q5KU26 742 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 MRFAP1L1Q96HT8 127 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 MCCC1Q96RQ3 725 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 SRPK1Q96SB4 655 aaKnown RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 SAMD15Q9P1V8 674 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 FREM3P0C091 2139 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 CECR2Q9BXF3 1484 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 ALDH3A1P30838 453 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 PTPN9P43378 593 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 EIF5P55010 431 aaKnown RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 MAP3K12Q12852 859 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 GEN1Q17RS7 908 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 AKNAD1Q5T1N1 836 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 PDXDC1Q6P996 788 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 ARHGEF1Q92888 912 aaKnown RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 LRRC59Q96AG4 307 aaKnown RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 EPSTI1Q96J88 318 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 TBC1D2Q9BYX2 928 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 RTCBQ9Y3I0 505 aaKnown RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 HLTFQ14527 1009 aaKnown RBP eCLIP3.09□□□□□ -1.916e-7■■■■□ 22.5
SCN1A-219ENST00000641575 GNPTABQ3T906 1256 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 TTC23Q5W5X9 447 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 SMARCC2Q8TAQ2 1214 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 NOX5Q96PH1 765 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 SPATS2LQ9NUQ6 558 aaKnown RBP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 SPDYE3A6NKU9 549 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 TRAF5O00463 557 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 ZNF75DP51815 510 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 MVPQ14764 893 aaKnown RBP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 PDCD2Q16342 344 aaPredicted RBP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 TOGARAM2Q6ZUX3 1019 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 YAF2Q8IY57 180 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 TTC25Q96NG3 672 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 NLRP3Q96P20 1036 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 UPF3BQ9BZI7 483 aaKnown RBP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 ARFGAP3Q9NP61 516 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 PCNX1Q96RV3 2341 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 NOP56O00567 594 aaKnown RBP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 SRGAP2CP0DJJ0 459 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 ME1P48163 572 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 NFX1Q12986 1120 aaKnown RBP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 TRPC3Q13507 836 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 SPECC1Q5M775 1068 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 TRAPPC3LQ5T215 181 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC183Q5T5S1 534 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 LMBRD2Q68DH5 695 aaPredicted RBP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC65Q8IXS2 484 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 TMTC2Q8N394 836 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 BRF1Q92994 677 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 ZFYVE1Q9HBF4 777 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 TFCP2L1Q9NZI6 479 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 U3KPZ7 1027 aaPredicted RBP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 HEATR5BQ9P2D3 2071 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms