RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 PDS5AQ29RF7 1337 aaKnown RBP21.53■■□□□ 1.04
CLN3-263ENST00000637871 G3V3G9 751 aa21.52■■□□□ 1.04
CLN3-263ENST00000637871 PRC1O43663 620 aa21.52■■□□□ 1.04
CLN3-263ENST00000637871 DNM1Q05193 864 aaKnown RBP21.52■■□□□ 1.04
CLN3-263ENST00000637871 APOBRQ0VD83 1088 aa21.52■■□□□ 1.04
CLN3-263ENST00000637871 DCAF8Q5TAQ9 597 aa21.52■■□□□ 1.04
CLN3-263ENST00000637871 C15orf52Q6ZUT6 534 aaKnown RBP21.52■■□□□ 1.04
CLN3-263ENST00000637871 TMEM87BQ96K49 555 aa21.52■■□□□ 1.04
CLN3-263ENST00000637871 CNNM2Q9H8M5 875 aa21.52■■□□□ 1.04
CLN3-263ENST00000637871 CFAP45Q9UL16 551 aa21.52■■□□□ 1.04
CLN3-263ENST00000637871 CDC37L1Q7L3B6 337 aa21.51■■□□□ 1.03
CLN3-263ENST00000637871 ZNF804AQ7Z570 1209 aa21.51■■□□□ 1.03
CLN3-263ENST00000637871 FAM43AQ8N2R8 423 aa21.51■■□□□ 1.03
CLN3-263ENST00000637871 JDP2Q8WYK2 163 aa21.51■■□□□ 1.03
CLN3-263ENST00000637871 DENND2AQ9ULE3 1009 aa21.51■■□□□ 1.03
CLN3-263ENST00000637871 ZNF541Q9H0D2 1346 aa21.51■■□□□ 1.03
CLN3-263ENST00000637871 ZNF646O15015 1829 aaPredicted RBP21.51■■□□□ 1.03
CLN3-263ENST00000637871 MYH13Q9UKX3 1938 aa21.51■■□□□ 1.03
CLN3-263ENST00000637871 COL1A1P02452 1464 aaPredicted RBP21.51■■□□□ 1.03
CLN3-263ENST00000637871 HIBADHP31937 336 aaKnown RBP21.51■■□□□ 1.03
CLN3-263ENST00000637871 FBXO33Q7Z6M2 555 aa21.51■■□□□ 1.03
CLN3-263ENST00000637871 VPS37DQ86XT2 251 aa21.51■■□□□ 1.03
CLN3-263ENST00000637871 CHAMP1Q96JM3 812 aa21.51■■□□□ 1.03
CLN3-263ENST00000637871 CD209Q9NNX6 404 aa21.51■■□□□ 1.03
CLN3-263ENST00000637871 RBM27Q9P2N5 1060 aaKnown RBP21.51■■□□□ 1.03
CLN3-263ENST00000637871 DOCK2Q92608 1830 aa21.5■■□□□ 1.03
CLN3-263ENST00000637871 FIBPO43427 364 aa21.5■■□□□ 1.03
CLN3-263ENST00000637871 GADD45BO75293 160 aaPredicted RBP21.5■■□□□ 1.03
CLN3-263ENST00000637871 RAD17O75943 681 aa21.5■■□□□ 1.03
CLN3-263ENST00000637871 APPP05067 770 aa21.5■■□□□ 1.03
CLN3-263ENST00000637871 MAGEB6Q8N7X4 407 aa21.5■■□□□ 1.03
CLN3-263ENST00000637871 FBXW7Q969H0 707 aa21.5■■□□□ 1.03
CLN3-263ENST00000637871 PPP1R9BQ96SB3 815 aa21.5■■□□□ 1.03
CLN3-263ENST00000637871 TSPY26PQ9H489 355 aa21.5■■□□□ 1.03
CLN3-263ENST00000637871 GDPD2Q9HCC8 539 aa21.5■■□□□ 1.03
CLN3-263ENST00000637871 SALL1Q9NSC2 1324 aa21.5■■□□□ 1.03
CLN3-263ENST00000637871 FOXD4L6Q3SYB3 417 aaPredicted RBP21.49■■□□□ 1.03
CLN3-263ENST00000637871 FOXD4L3Q6VB84 417 aaPredicted RBP21.49■■□□□ 1.03
CLN3-263ENST00000637871 LRRC2Q9BYS8 371 aa21.49■■□□□ 1.03
CLN3-263ENST00000637871 COA1Q9GZY4 146 aa21.49■■□□□ 1.03
CLN3-263ENST00000637871 VPS33BQ9H267 617 aa21.49■■□□□ 1.03
CLN3-263ENST00000637871 ZNRF3Q9ULT6 936 aa21.49■■□□□ 1.03
CLN3-263ENST00000637871 SYCE3A1L190 88 aa21.48■■□□□ 1.03
CLN3-263ENST00000637871 PTPDC1A2A3K4 754 aa21.48■■□□□ 1.03
CLN3-263ENST00000637871 MXD3Q9BW11 206 aa21.48■■□□□ 1.03
CLN3-263ENST00000637871 PANK2Q9BZ23 570 aa21.48■■□□□ 1.03
CLN3-263ENST00000637871 KRT23Q9C075 422 aa21.48■■□□□ 1.03
CLN3-263ENST00000637871 NAPBQ9H115 298 aa21.48■■□□□ 1.03
CLN3-263ENST00000637871 LRP2BPQ9P2M1 347 aa21.48■■□□□ 1.03
CLN3-263ENST00000637871 PSME4Q14997 1843 aa21.48■■□□□ 1.03
CLN3-263ENST00000637871 JAK2O60674 1132 aa21.47■■□□□ 1.03
CLN3-263ENST00000637871 HAND2P61296 217 aa21.47■■□□□ 1.03
CLN3-263ENST00000637871 RESTQ13127 1097 aa21.47■■□□□ 1.03
CLN3-263ENST00000637871 UVSSAQ2YD98 709 aa21.47■■□□□ 1.03
CLN3-263ENST00000637871 CPLX2Q6PUV4 134 aaKnown RBP21.47■■□□□ 1.03
CLN3-263ENST00000637871 IFNL3Q8IZI9 196 aa21.47■■□□□ 1.03
CLN3-263ENST00000637871 ANGEL1Q9UNK9 670 aaKnown RBP21.47■■□□□ 1.03
CLN3-263ENST00000637871 FZD9O00144 591 aa21.47■■□□□ 1.03
CLN3-263ENST00000637871 CDKL5O76039 1030 aa21.47■■□□□ 1.03
CLN3-263ENST00000637871 CHAF1AQ13111 956 aaPredicted RBP21.47■■□□□ 1.03
CLN3-263ENST00000637871 RNF41Q9H4P4 317 aaPredicted RBP21.47■■□□□ 1.03
CLN3-263ENST00000637871 GOLGA6L4A6NEF3 574 aa21.46■■□□□ 1.03
CLN3-263ENST00000637871 CTDNEP1O95476 244 aa21.46■■□□□ 1.03
CLN3-263ENST00000637871 IL1R1P14778 569 aa21.46■■□□□ 1.03
CLN3-263ENST00000637871 CXCL9Q07325 125 aa21.46■■□□□ 1.03
CLN3-263ENST00000637871 TDRD7Q8NHU6 1098 aaKnown RBP21.46■■□□□ 1.03
CLN3-263ENST00000637871 TRIM44Q96DX7 344 aaPredicted RBP21.46■■□□□ 1.03
CLN3-263ENST00000637871 SPATA32Q96LK8 384 aa21.46■■□□□ 1.03
CLN3-263ENST00000637871 ZNF396Q96N95 335 aaPredicted RBP21.46■■□□□ 1.03
CLN3-263ENST00000637871 TCHHQ07283 1943 aa21.45■■□□□ 1.02
CLN3-263ENST00000637871 MBD4O95243 580 aa21.45■■□□□ 1.02
CLN3-263ENST00000637871 LIFRP42702 1097 aa21.45■■□□□ 1.02
CLN3-263ENST00000637871 GTF2IP78347 998 aa21.45■■□□□ 1.02
CLN3-263ENST00000637871 KLF18A0A0U1RQI7 1052 aa21.44■■□□□ 1.02
CLN3-263ENST00000637871 PSMD14O00487 310 aa21.44■■□□□ 1.02
CLN3-263ENST00000637871 PODNQ7Z5L7 613 aa21.44■■□□□ 1.02
CLN3-263ENST00000637871 TMTC2Q8N394 836 aa21.44■■□□□ 1.02
CLN3-263ENST00000637871 RBSNQ9H1K0 784 aa21.44■■□□□ 1.02
CLN3-263ENST00000637871 GJA3Q9Y6H8 435 aa21.44■■□□□ 1.02
CLN3-263ENST00000637871 CPLX1O14810 134 aa21.44■■□□□ 1.02
CLN3-263ENST00000637871 PCP11498 1178 aaKnown RBP21.44■■□□□ 1.02
CLN3-263ENST00000637871 EIF6P56537 245 aaKnown RBP21.44■■□□□ 1.02
CLN3-263ENST00000637871 ANTXR2P58335 489 aa21.44■■□□□ 1.02
CLN3-263ENST00000637871 CCT2P78371 535 aaKnown RBP21.44■■□□□ 1.02
CLN3-263ENST00000637871 HS1BP3Q53T59 392 aa21.44■■□□□ 1.02
CLN3-263ENST00000637871 GIMAP6Q6P9H5 292 aa21.44■■□□□ 1.02
CLN3-263ENST00000637871 TTC6Q86TZ1 520 aa21.44■■□□□ 1.02
CLN3-263ENST00000637871 FERMT3Q86UX7 667 aa21.44■■□□□ 1.02
CLN3-263ENST00000637871 SGMS1Q86VZ5 419 aa21.44■■□□□ 1.02
CLN3-263ENST00000637871 DDX11Q96FC9 970 aa21.44■■□□□ 1.02
CLN3-263ENST00000637871 NAP1L2Q9ULW6 460 aaPredicted RBP21.44■■□□□ 1.02
CLN3-263ENST00000637871 GSG1L2A8MUP6 293 aa21.43■■□□□ 1.02
CLN3-263ENST00000637871 NT5C2P49902 561 aa21.43■■□□□ 1.02
CLN3-263ENST00000637871 RCAN1P53805 252 aa21.43■■□□□ 1.02
CLN3-263ENST00000637871 AKNAD1Q5T1N1 836 aa21.43■■□□□ 1.02
CLN3-263ENST00000637871 LEO1Q8WVC0 666 aaPredicted RBP21.43■■□□□ 1.02
CLN3-263ENST00000637871 STAG1Q8WVM7 1258 aa21.43■■□□□ 1.02
CLN3-263ENST00000637871 DDX19AQ9NUU7 478 aaKnown RBP21.43■■□□□ 1.02
CLN3-263ENST00000637871 ZBTB12Q9Y330 459 aaPredicted RBP21.43■■□□□ 1.02
CLN3-263ENST00000637871 GOLGA8BA8MQT2 603 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms