RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SLURP2P0DP57 97 aa24.12■■□□□ 1.45
CLN3-262ENST00000637699 PTPRAP18433 802 aa24.12■■□□□ 1.45
CLN3-262ENST00000637699 GJA8P48165 433 aa24.12■■□□□ 1.45
CLN3-262ENST00000637699 UBXN2AP68543 259 aa24.12■■□□□ 1.45
CLN3-262ENST00000637699 CCDC102BQ68D86 513 aa24.12■■□□□ 1.45
CLN3-262ENST00000637699 SH3BP5LQ7L8J4 393 aa24.12■■□□□ 1.45
CLN3-262ENST00000637699 FASTKD5Q7L8L6 764 aaKnown RBP24.12■■□□□ 1.45
CLN3-262ENST00000637699 PRRT2Q7Z6L0 340 aaPredicted RBP24.12■■□□□ 1.45
CLN3-262ENST00000637699 CDCA7LQ96GN5 454 aa24.12■■□□□ 1.45
CLN3-262ENST00000637699 IDI2Q9BXS1 227 aa24.12■■□□□ 1.45
CLN3-262ENST00000637699 GABRQQ9UN88 632 aa24.12■■□□□ 1.45
CLN3-262ENST00000637699 LRRFIP2Q9Y608 721 aaKnown RBP24.12■■□□□ 1.45
CLN3-262ENST00000637699 ATRNL1Q5VV63 1379 aa24.12■■□□□ 1.45
CLN3-262ENST00000637699 DZIP1Q86YF9 867 aaKnown RBP24.11■■□□□ 1.45
CLN3-262ENST00000637699 ZGPATQ8N5A5 531 aaKnown RBP24.11■■□□□ 1.45
CLN3-262ENST00000637699 ABCF2Q9UG63 623 aa24.11■■□□□ 1.45
CLN3-262ENST00000637699 AFG3L2Q9Y4W6 797 aa24.11■■□□□ 1.45
CLN3-262ENST00000637699 MYH2Q9UKX2 1941 aa24.11■■□□□ 1.45
CLN3-262ENST00000637699 GAKO14976 1311 aa24.1■■□□□ 1.45
CLN3-262ENST00000637699 TIMM10P62072 90 aa24.1■■□□□ 1.45
CLN3-262ENST00000637699 NOB1Q9ULX3 412 aaKnown RBP24.1■■□□□ 1.45
CLN3-262ENST00000637699 DDTLA6NHG4 134 aaPredicted RBP24.09■■□□□ 1.45
CLN3-262ENST00000637699 PICALMQ13492 652 aa24.09■■□□□ 1.45
CLN3-262ENST00000637699 RASGRF1Q13972 1273 aa24.09■■□□□ 1.45
CLN3-262ENST00000637699 SLAIN1Q8ND83 568 aa24.09■■□□□ 1.45
CLN3-262ENST00000637699 UNC93B1Q9H1C4 597 aa24.09■■□□□ 1.45
CLN3-262ENST00000637699 DOCK2Q92608 1830 aa24.09■■□□□ 1.45
CLN3-262ENST00000637699 UBE2Q1Q7Z7E8 422 aa24.08■■□□□ 1.45
CLN3-262ENST00000637699 SLF2Q8IX21 1173 aa24.08■■□□□ 1.45
CLN3-262ENST00000637699 HTATIP2Q9BUP3 242 aa24.08■■□□□ 1.45
CLN3-262ENST00000637699 COPRSQ9NQ92 184 aa24.08■■□□□ 1.45
CLN3-262ENST00000637699 DDX4Q9NQI0 724 aaKnown RBP24.08■■□□□ 1.45
CLN3-262ENST00000637699 MGAMO43451 1857 aa24.08■■□□□ 1.45
CLN3-262ENST00000637699 SZT2Q5T011 3432 aa24.07■■□□□ 1.44
CLN3-262ENST00000637699 TRIM75PA6NK02 468 aa24.07■■□□□ 1.44
CLN3-262ENST00000637699 ADCY3O60266 1144 aa24.07■■□□□ 1.44
CLN3-262ENST00000637699 BTDP43251 543 aa24.07■■□□□ 1.44
CLN3-262ENST00000637699 FLT3LGP49771 235 aa24.07■■□□□ 1.44
CLN3-262ENST00000637699 MAP3K10Q02779 954 aa24.07■■□□□ 1.44
CLN3-262ENST00000637699 CCDC84Q86UT8 332 aaPredicted RBP24.07■■□□□ 1.44
CLN3-262ENST00000637699 U2AF1L4Q8WU68 220 aaKnown RBP24.07■■□□□ 1.44
CLN3-262ENST00000637699 RBM27Q9P2N5 1060 aaKnown RBP24.07■■□□□ 1.44
CLN3-262ENST00000637699 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.07■■□□□ 1.44
CLN3-262ENST00000637699 HDAC5Q9UQL6 1122 aa24.07■■□□□ 1.44
CLN3-262ENST00000637699 RANBP2P49792 3224 aaKnown RBP24.07■■□□□ 1.44
CLN3-262ENST00000637699 RFX7Q2KHR2 1363 aa24.06■■□□□ 1.44
CLN3-262ENST00000637699 CTNND1O60716 968 aaKnown RBP24.06■■□□□ 1.44
CLN3-262ENST00000637699 ELNP15502 786 aa24.06■■□□□ 1.44
CLN3-262ENST00000637699 SPTY2D1Q68D10 685 aaPredicted RBP24.06■■□□□ 1.44
CLN3-262ENST00000637699 SMCR8Q8TEV9 937 aaPredicted RBP24.06■■□□□ 1.44
CLN3-262ENST00000637699 FAM163AQ96GL9 167 aaPredicted RBP24.06■■□□□ 1.44
CLN3-262ENST00000637699 TNPO2O14787 897 aaKnown RBP24.05■■□□□ 1.44
CLN3-262ENST00000637699 FARP2O94887 1054 aaPredicted RBP24.05■■□□□ 1.44
CLN3-262ENST00000637699 MEIS3Q99687 375 aa24.05■■□□□ 1.44
CLN3-262ENST00000637699 API5Q9BZZ5 524 aaKnown RBP24.05■■□□□ 1.44
CLN3-262ENST00000637699 SLC45A1Q9Y2W3 748 aa24.05■■□□□ 1.44
CLN3-262ENST00000637699 A0A1B0GUL7 405 aa24.04■■□□□ 1.44
CLN3-262ENST00000637699 ZBTB22O15209 634 aa24.04■■□□□ 1.44
CLN3-262ENST00000637699 SGPL1O95470 568 aa24.04■■□□□ 1.44
CLN3-262ENST00000637699 XAGE2Q96GT9 111 aa24.04■■□□□ 1.44
CLN3-262ENST00000637699 TAOK2Q9UL54 1235 aa24.04■■□□□ 1.44
CLN3-262ENST00000637699 MROH7-TTC4A0A0A0MT08 1334 aa24.04■■□□□ 1.44
CLN3-262ENST00000637699 INHAP05111 366 aa24.03■■□□□ 1.44
CLN3-262ENST00000637699 MECOMQ03112 1051 aa24.03■■□□□ 1.44
CLN3-262ENST00000637699 TFCP2Q12800 502 aa24.03■■□□□ 1.44
CLN3-262ENST00000637699 ERICH6Q7L0X2 663 aa24.03■■□□□ 1.44
CLN3-262ENST00000637699 NR2E3Q9Y5X4 410 aa24.03■■□□□ 1.44
CLN3-262ENST00000637699 PDS5AQ29RF7 1337 aaKnown RBP24.03■■□□□ 1.44
CLN3-262ENST00000637699 FAM196BA6NMK8 535 aa24.02■■□□□ 1.44
CLN3-262ENST00000637699 TRMT2AQ8IZ69 625 aaKnown RBP24.02■■□□□ 1.44
CLN3-262ENST00000637699 ANKRD13CQ8N6S4 541 aa24.02■■□□□ 1.44
CLN3-262ENST00000637699 AGTPBP1Q9UPW5 1226 aa24.02■■□□□ 1.44
CLN3-262ENST00000637699 DOCK1Q14185 1865 aa24.02■■□□□ 1.44
CLN3-262ENST00000637699 GPR75-ASB3A0A0A6YYF3 556 aa24.01■■□□□ 1.43
CLN3-262ENST00000637699 TFRCP02786 760 aaKnown RBP24.01■■□□□ 1.43
CLN3-262ENST00000637699 RHBDL3P58872 404 aa24.01■■□□□ 1.43
CLN3-262ENST00000637699 MVPQ14764 893 aaKnown RBP24.01■■□□□ 1.43
CLN3-262ENST00000637699 TREML2Q5T2D2 321 aa24.01■■□□□ 1.43
CLN3-262ENST00000637699 PXYLP1Q8TE99 480 aa24.01■■□□□ 1.43
CLN3-262ENST00000637699 NEUROD6Q96NK8 337 aa24.01■■□□□ 1.43
CLN3-262ENST00000637699 DEFB118Q96PH6 123 aa24.01■■□□□ 1.43
CLN3-262ENST00000637699 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.01■■□□□ 1.43
CLN3-262ENST00000637699 AKAP2Q9Y2D5 859 aa24.01■■□□□ 1.43
CLN3-262ENST00000637699 PTPRFP10586 1907 aa24.01■■□□□ 1.43
CLN3-262ENST00000637699 PHIPQ8WWQ0 1821 aa24■■□□□ 1.43
CLN3-262ENST00000637699 SRGAP3O43295 1099 aa24■■□□□ 1.43
CLN3-262ENST00000637699 IRF5Q13568 498 aa24■■□□□ 1.43
CLN3-262ENST00000637699 ZNF384Q8TF68 577 aa24■■□□□ 1.43
CLN3-262ENST00000637699 TBC1D12O60347 775 aa23.99■■□□□ 1.43
CLN3-262ENST00000637699 CT47B1P0C2W7 299 aaPredicted RBP23.99■■□□□ 1.43
CLN3-262ENST00000637699 COA7Q96BR5 231 aa23.99■■□□□ 1.43
CLN3-262ENST00000637699 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.99■■□□□ 1.43
CLN3-262ENST00000637699 ZBTB7BO15156 539 aaPredicted RBP23.98■■□□□ 1.43
CLN3-262ENST00000637699 SPP2Q13103 211 aa23.98■■□□□ 1.43
CLN3-262ENST00000637699 PI16Q6UXB8 463 aa23.98■■□□□ 1.43
CLN3-262ENST00000637699 TBC1D9Q6ZT07 1266 aa23.98■■□□□ 1.43
CLN3-262ENST00000637699 PRO3102Q9H379 93 aa23.98■■□□□ 1.43
CLN3-262ENST00000637699 HMG20BQ9P0W2 317 aa23.98■■□□□ 1.43
CLN3-262ENST00000637699 PNMA3Q9UL41 463 aa23.98■■□□□ 1.43
CLN3-262ENST00000637699 EVI5O60447 810 aa23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms