RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 SMC3Q9UQE7 1217 aa12.46□□□□□ -0.41
CLN3-248ENST00000636355 DICER1Q9UPY3 1922 aaKnown RBP12.45□□□□□ -0.42
CLN3-248ENST00000636355 WDR33Q9C0J8 1336 aaKnown RBP12.45□□□□□ -0.42
CLN3-248ENST00000636355 USP17L3A6NCW0 530 aa12.45□□□□□ -0.42
CLN3-248ENST00000636355 USP17L4A6NCW7 530 aa12.45□□□□□ -0.42
CLN3-248ENST00000636355 DDX11L8A8MPP1 907 aa12.45□□□□□ -0.42
CLN3-248ENST00000636355 RIMBP2O15034 1052 aa12.45□□□□□ -0.42
CLN3-248ENST00000636355 PRKAB2O43741 272 aa12.45□□□□□ -0.42
CLN3-248ENST00000636355 ZBTB7AO95365 584 aa12.45□□□□□ -0.42
CLN3-248ENST00000636355 LARGE1O95461 756 aa12.45□□□□□ -0.42
CLN3-248ENST00000636355 BTDP43251 543 aa12.45□□□□□ -0.42
CLN3-248ENST00000636355 ANTXR2P58335 489 aa12.45□□□□□ -0.42
CLN3-248ENST00000636355 HMGN5P82970 282 aaKnown RBP12.45□□□□□ -0.42
CLN3-248ENST00000636355 OLFM4Q6UX06 510 aa12.45□□□□□ -0.42
CLN3-248ENST00000636355 NOL8Q76FK4 1167 aaKnown RBP12.45□□□□□ -0.42
CLN3-248ENST00000636355 USP17L1Q7RTZ2 530 aa12.45□□□□□ -0.42
CLN3-248ENST00000636355 TMTC2Q8N394 836 aa12.45□□□□□ -0.42
CLN3-248ENST00000636355 SPRYD3Q8NCJ5 442 aa12.45□□□□□ -0.42
CLN3-248ENST00000636355 TEKT1Q969V4 418 aa12.45□□□□□ -0.42
CLN3-248ENST00000636355 ZNF287Q9HBT7 754 aa12.45□□□□□ -0.42
CLN3-248ENST00000636355 MYH15Q9Y2K3 1946 aa12.45□□□□□ -0.42
CLN3-248ENST00000636355 A0A0G2JLW4 131 aa12.44□□□□□ -0.42
CLN3-248ENST00000636355 SH2B2O14492 632 aaPredicted RBP12.44□□□□□ -0.42
CLN3-248ENST00000636355 PPIP5K2O43314 1243 aa12.44□□□□□ -0.42
CLN3-248ENST00000636355 C21orf2O43822 256 aa12.44□□□□□ -0.42
CLN3-248ENST00000636355 NPM3O75607 178 aaKnown RBP12.44□□□□□ -0.42
CLN3-248ENST00000636355 C1QTNF8P60827 252 aa12.44□□□□□ -0.42
CLN3-248ENST00000636355 DYNLL1P63167 89 aaKnown RBP12.44□□□□□ -0.42
CLN3-248ENST00000636355 PDE4BQ07343 736 aa12.44□□□□□ -0.42
CLN3-248ENST00000636355 DIXDC1Q155Q3 683 aa12.44□□□□□ -0.42
CLN3-248ENST00000636355 DALRD3Q5D0E6 543 aaKnown RBP12.44□□□□□ -0.42
CLN3-248ENST00000636355 DACT2Q5SW24 774 aa12.44□□□□□ -0.42
CLN3-248ENST00000636355 CTR9Q6PD62 1173 aa12.44□□□□□ -0.42
CLN3-248ENST00000636355 CCDC83Q8IWF9 413 aa12.44□□□□□ -0.42
CLN3-248ENST00000636355 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.44□□□□□ -0.42
CLN3-248ENST00000636355 DAGLAQ9Y4D2 1042 aa12.44□□□□□ -0.42
CLN3-248ENST00000636355 GREB1LQ9C091 1923 aaPredicted RBP12.43□□□□□ -0.42
CLN3-248ENST00000636355 ERICH2A1L162 156 aa12.43□□□□□ -0.42
CLN3-248ENST00000636355 BRD1O95696 1058 aa12.43□□□□□ -0.42
CLN3-248ENST00000636355 USP5P45974 858 aa12.43□□□□□ -0.42
CLN3-248ENST00000636355 RHBDL3P58872 404 aa12.43□□□□□ -0.42
CLN3-248ENST00000636355 ST3GAL1Q11201 340 aa12.43□□□□□ -0.42
CLN3-248ENST00000636355 PPP2R5BQ15173 497 aa12.43□□□□□ -0.42
CLN3-248ENST00000636355 NFKBIBQ15653 356 aa12.43□□□□□ -0.42
CLN3-248ENST00000636355 AOC3Q16853 763 aa12.43□□□□□ -0.42
CLN3-248ENST00000636355 CCDC178Q5BJE1 867 aa12.43□□□□□ -0.42
CLN3-248ENST00000636355 CERS5Q8N5B7 392 aa12.43□□□□□ -0.42
CLN3-248ENST00000636355 TCEANC2Q96MN5 208 aa12.43□□□□□ -0.42
CLN3-248ENST00000636355 ZDHHC15Q96MV8 337 aa12.43□□□□□ -0.42
CLN3-248ENST00000636355 SPON1Q9HCB6 807 aa12.43□□□□□ -0.42
CLN3-248ENST00000636355 SERPINA10Q9UK55 444 aa12.43□□□□□ -0.42
CLN3-248ENST00000636355 JAG2Q9Y219 1238 aa12.43□□□□□ -0.42
CLN3-248ENST00000636355 PLIN4Q96Q06 1357 aa12.43□□□□□ -0.42
CLN3-248ENST00000636355 FLT1P17948 1338 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 B4E1Z4 1266 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 USP17L12C9JPN9 530 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 USP17L21D6R901 530 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 GOLGA6L22H0YM25 854 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 KDM4AO75164 1064 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 CDKL5O76039 1030 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 PTGER2P43116 358 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 COL9A3Q14050 684 aaPredicted RBP12.42□□□□□ -0.42
CLN3-248ENST00000636355 GRIK5Q16478 980 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 DOK7Q18PE1 504 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 C12orf60Q5U649 245 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 APOA5Q6Q788 366 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 IQCA1Q86XH1 822 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 TEX11Q8IYF3 940 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 SMARCC2Q8TAQ2 1214 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 SH3RF3Q8TEJ3 882 aaPredicted RBP12.42□□□□□ -0.42
CLN3-248ENST00000636355 TNPO1Q92973 898 aaKnown RBP12.42□□□□□ -0.42
CLN3-248ENST00000636355 UBAC1Q9BSL1 405 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 DBNDD1Q9H9R9 158 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 MCM9Q9NXL9 1143 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 TTF2Q9UNY4 1162 aaKnown RBP12.42□□□□□ -0.42
CLN3-248ENST00000636355 ATP6V1DQ9Y5K8 247 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 MYH6P13533 1939 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 COL4A5P29400 1685 aa12.42□□□□□ -0.42
CLN3-248ENST00000636355 GOLGA8BA8MQT2 603 aa12.41□□□□□ -0.42
CLN3-248ENST00000636355 PDIA3P30101 505 aaKnown RBP12.41□□□□□ -0.42
CLN3-248ENST00000636355 CTDSPL2Q05D32 466 aa12.41□□□□□ -0.42
CLN3-248ENST00000636355 APOBRQ0VD83 1088 aa12.41□□□□□ -0.42
CLN3-248ENST00000636355 TMEM67Q5HYA8 995 aa12.41□□□□□ -0.42
CLN3-248ENST00000636355 ANP32EQ9BTT0 268 aa12.41□□□□□ -0.42
CLN3-248ENST00000636355 TAOK3Q9H2K8 898 aa12.41□□□□□ -0.42
CLN3-248ENST00000636355 LY9Q9HBG7 655 aa12.41□□□□□ -0.42
CLN3-248ENST00000636355 FOXD4L1Q9NU39 408 aa12.41□□□□□ -0.42
CLN3-248ENST00000636355 SIPA1L1O43166 1804 aa12.41□□□□□ -0.42
CLN3-248ENST00000636355 KLF18A0A0U1RQI7 1052 aa12.4□□□□□ -0.42
CLN3-248ENST00000636355 CCDC196A0A1B0GTZ2 297 aa12.4□□□□□ -0.42
CLN3-248ENST00000636355 MINDY4BA8MYZ0 360 aa12.4□□□□□ -0.42
CLN3-248ENST00000636355 STX6O43752 255 aa12.4□□□□□ -0.42
CLN3-248ENST00000636355 GJB2P29033 226 aa12.4□□□□□ -0.42
CLN3-248ENST00000636355 IARSP41252 1262 aaKnown RBP12.4□□□□□ -0.42
CLN3-248ENST00000636355 SCRN1Q12765 414 aa12.4□□□□□ -0.42
CLN3-248ENST00000636355 CPLX2Q6PUV4 134 aaKnown RBP12.4□□□□□ -0.42
CLN3-248ENST00000636355 CYB5R4Q7L1T6 521 aa12.4□□□□□ -0.42
CLN3-248ENST00000636355 NIM1KQ8IY84 436 aa12.4□□□□□ -0.42
CLN3-248ENST00000636355 LARGE2Q8N3Y3 721 aa12.4□□□□□ -0.42
CLN3-248ENST00000636355 IGDCC4Q8TDY8 1250 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms