RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 TRIM47Q96LD4 638 aa12.51□□□□□ -0.41
CLN3-244ENST00000636147 PLIN2Q99541 437 aa12.51□□□□□ -0.41
CLN3-244ENST00000636147 POLR3EQ9NVU0 708 aa12.51□□□□□ -0.41
CLN3-244ENST00000636147 CTNND2Q9UQB3 1225 aa12.51□□□□□ -0.41
CLN3-244ENST00000636147 CCDC196A0A1B0GTZ2 297 aa12.51□□□□□ -0.41
CLN3-244ENST00000636147 PAFAH1B1P43034 410 aa12.51□□□□□ -0.41
CLN3-244ENST00000636147 MTIF2P46199 727 aaKnown RBP12.51□□□□□ -0.41
CLN3-244ENST00000636147 ACRBPQ8NEB7 543 aa12.51□□□□□ -0.41
CLN3-244ENST00000636147 SUGCTQ9HAC7 445 aa12.51□□□□□ -0.41
CLN3-244ENST00000636147 IQSEC3Q9UPP2 1182 aaPredicted RBP12.51□□□□□ -0.41
CLN3-244ENST00000636147 KDRP35968 1356 aa12.51□□□□□ -0.41
CLN3-244ENST00000636147 YEATS2Q9ULM3 1422 aa12.51□□□□□ -0.41
CLN3-244ENST00000636147 VWA3AA6NCI4 1184 aa12.51□□□□□ -0.41
CLN3-244ENST00000636147 ATP8B1O43520 1251 aa12.51□□□□□ -0.41
CLN3-244ENST00000636147 ZFYP08048 801 aaPredicted RBP12.51□□□□□ -0.41
CLN3-244ENST00000636147 KIF23Q02241 960 aaPredicted RBP12.51□□□□□ -0.41
CLN3-244ENST00000636147 WTAPQ15007 396 aa12.51□□□□□ -0.41
CLN3-244ENST00000636147 LRRC24Q50LG9 513 aa12.51□□□□□ -0.41
CLN3-244ENST00000636147 FOXN1O15353 648 aa12.5□□□□□ -0.41
CLN3-244ENST00000636147 CASP14P31944 242 aa12.5□□□□□ -0.41
CLN3-244ENST00000636147 ZAP70P43403 619 aa12.5□□□□□ -0.41
CLN3-244ENST00000636147 HLTFQ14527 1009 aaKnown RBP eCLIP12.5□□□□□ -0.41
CLN3-244ENST00000636147 KIF6Q6ZMV9 814 aa12.5□□□□□ -0.41
CLN3-244ENST00000636147 L2HGDHQ9H9P8 463 aa12.5□□□□□ -0.41
CLN3-244ENST00000636147 GOLGA6CA6NDK9 693 aa12.5□□□□□ -0.41
CLN3-244ENST00000636147 GOLGA6DP0CG33 693 aa12.5□□□□□ -0.41
CLN3-244ENST00000636147 ZNF174Q15697 407 aa12.5□□□□□ -0.41
CLN3-244ENST00000636147 SLC4A8Q2Y0W8 1093 aa12.5□□□□□ -0.41
CLN3-244ENST00000636147 THEMISQ8N1K5 641 aaPredicted RBP12.5□□□□□ -0.41
CLN3-244ENST00000636147 BLZF1Q9H2G9 400 aa12.5□□□□□ -0.41
CLN3-244ENST00000636147 GOLGA6AQ9NYA3 693 aa12.5□□□□□ -0.41
CLN3-244ENST00000636147 LUC7L2Q9Y383 392 aaKnown RBP12.5□□□□□ -0.41
CLN3-244ENST00000636147 JRKLQ9Y4A0 524 aa12.5□□□□□ -0.41
CLN3-244ENST00000636147 SYNRGQ9UMZ2 1314 aa12.5□□□□□ -0.41
CLN3-244ENST00000636147 EYA2O00167 538 aa12.5□□□□□ -0.41
CLN3-244ENST00000636147 CHRNA2Q15822 529 aa12.5□□□□□ -0.41
CLN3-244ENST00000636147 TDRD12Q587J7 1177 aaKnown RBP12.5□□□□□ -0.41
CLN3-244ENST00000636147 RBM43Q6ZSC3 357 aaKnown RBP12.5□□□□□ -0.41
CLN3-244ENST00000636147 OTUD6BQ8N6M0 293 aa12.5□□□□□ -0.41
CLN3-244ENST00000636147 MAST3O60307 1309 aa12.5□□□□□ -0.41
CLN3-244ENST00000636147 AKR1B10O60218 316 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 CCT5P48643 541 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 RBL2Q08999 1139 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 MAATS1Q7Z4T9 603 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 SMARCC2Q8TAQ2 1214 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 NLRP5P59047 1200 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 PTPN12Q05209 780 aaKnown RBP12.49□□□□□ -0.41
CLN3-244ENST00000636147 CASP8Q14790 479 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 NCAPH2Q6IBW4 605 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 PI16Q6UXB8 463 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 ENGASEQ8NFI3 743 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 TTF2Q9UNY4 1162 aaKnown RBP12.49□□□□□ -0.41
CLN3-244ENST00000636147 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.49□□□□□ -0.41
CLN3-244ENST00000636147 CAMSAP1Q5T5Y3 1602 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 NDUFAB1O14561 156 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 SSBP05455 408 aaKnown RBP eCLIP12.49□□□□□ -0.41
CLN3-244ENST00000636147 IGKV5-2P06315 115 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 ERCC3P19447 782 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 SND1Q7KZF4 910 aaKnown RBP eCLIP12.49□□□□□ -0.411e-7■■■□□ 15.8
CLN3-244ENST00000636147 CEP57Q86XR8 500 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 OSBP2Q969R2 916 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 C19orf44Q9H6X5 657 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 COPRSQ9NQ92 184 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 GNL3LQ9NVN8 582 aaKnown RBP12.49□□□□□ -0.41
CLN3-244ENST00000636147 PARP3Q9Y6F1 533 aa12.49□□□□□ -0.41
CLN3-244ENST00000636147 USO1O60763 962 aaKnown RBP12.48□□□□□ -0.41
CLN3-244ENST00000636147 CTDNEP1O95476 244 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 TBC1D8O95759 1140 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 IDEP14735 1019 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 CASP1P29466 404 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 MRPS25P82663 173 aaKnown RBP12.48□□□□□ -0.41
CLN3-244ENST00000636147 IFT81Q8WYA0 676 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 XAGE2Q96GT9 111 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 MKRN1Q9UHC7 482 aaKnown RBP12.48□□□□□ -0.41
CLN3-244ENST00000636147 ZCCHC11Q5TAX3 1644 aaKnown RBP12.48□□□□□ -0.41
CLN3-244ENST00000636147 KRT86O43790 486 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 MYO1BO43795 1136 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 RAD21O60216 631 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 ERLIN2O94905 339 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 KCNA6P17658 529 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 EVA1CP58658 441 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 MAP3K12Q12852 859 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 PUS3Q9BZE2 481 aaKnown RBP12.48□□□□□ -0.41
CLN3-244ENST00000636147 PTPRMP28827 1452 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 NRXN1Q9ULB1 1477 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 KIAA1210Q9ULL0 1709 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 ARHGAP31Q2M1Z3 1444 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 ROBO2Q9HCK4 1378 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 M0R2C6 588 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 HSF2BPO75031 334 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 RNF40O75150 1001 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 GCP02774 474 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 RNASE9P60153 205 aaKnown RBP12.48□□□□□ -0.41
CLN3-244ENST00000636147 CKAP4Q07065 602 aaKnown RBP12.48□□□□□ -0.41
CLN3-244ENST00000636147 SF3A3Q12874 501 aaKnown RBP eCLIP12.48□□□□□ -0.41
CLN3-244ENST00000636147 APPBP2Q92624 585 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 FAM89AQ96GI7 184 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 MYO6Q9UM54 1294 aa12.48□□□□□ -0.41
CLN3-244ENST00000636147 PPRC1Q5VV67 1664 aaKnown RBP12.47□□□□□ -0.41
CLN3-244ENST00000636147 GOLGA6BA6NDN3 693 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms