RNA–Protein interactions for RNA: ENST00000629088.1

PNKP-222, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-222ENST00000629088 ABCF2Q9UG63 623 aa19.55■□□□□ 0.72
PNKP-222ENST00000629088 MYH2Q9UKX2 1941 aa19.55■□□□□ 0.72
PNKP-222ENST00000629088 H0YGN5 161 aa19.54■□□□□ 0.72
PNKP-222ENST00000629088 BCAR3O75815 825 aa19.54■□□□□ 0.72
PNKP-222ENST00000629088 MAP4K4O95819 1239 aaPredicted RBP19.54■□□□□ 0.72
PNKP-222ENST00000629088 MAP3K10Q02779 954 aa19.54■□□□□ 0.72
PNKP-222ENST00000629088 MOGSQ13724 837 aa19.54■□□□□ 0.72
PNKP-222ENST00000629088 MTFR1Q15390 333 aa19.54■□□□□ 0.72
PNKP-222ENST00000629088 FRAT1Q92837 279 aaPredicted RBP19.54■□□□□ 0.72
PNKP-222ENST00000629088 SRRDQ9UH36 339 aa19.54■□□□□ 0.72
PNKP-222ENST00000629088 MROH7-TTC4A0A0A0MT08 1334 aa19.53■□□□□ 0.72
PNKP-222ENST00000629088 CXCL11O14625 94 aa19.53■□□□□ 0.72
PNKP-222ENST00000629088 NPM3O75607 178 aaKnown RBP19.53■□□□□ 0.72
PNKP-222ENST00000629088 RGS3P49796 1198 aa19.53■□□□□ 0.72
PNKP-222ENST00000629088 ZKSCAN2Q63HK3 967 aa19.53■□□□□ 0.72
PNKP-222ENST00000629088 ZFPM1Q8IX07 1006 aa19.53■□□□□ 0.72
PNKP-222ENST00000629088 ZSWIM8A7E2V4 1837 aa19.53■□□□□ 0.72
PNKP-222ENST00000629088 DOCK2Q92608 1830 aa19.53■□□□□ 0.72
PNKP-222ENST00000629088 ADGRA2Q96PE1 1338 aa19.52■□□□□ 0.72
PNKP-222ENST00000629088 FMNL1O95466 1100 aaPredicted RBP19.52■□□□□ 0.72
PNKP-222ENST00000629088 OSBPP22059 807 aa19.52■□□□□ 0.72
PNKP-222ENST00000629088 ARID4AP29374 1257 aaPredicted RBP19.52■□□□□ 0.72
PNKP-222ENST00000629088 G3BP1Q13283 466 aaKnown RBP eCLIP19.52■□□□□ 0.72
PNKP-222ENST00000629088 ERICH6Q7L0X2 663 aa19.52■□□□□ 0.72
PNKP-222ENST00000629088 SHISA4Q96DD7 197 aa19.52■□□□□ 0.72
PNKP-222ENST00000629088 NEUROD6Q96NK8 337 aa19.52■□□□□ 0.72
PNKP-222ENST00000629088 AK9Q5TCS8 1911 aa19.52■□□□□ 0.72
PNKP-222ENST00000629088 GPR75-ASB3A0A0A6YYF3 556 aa19.51■□□□□ 0.71
PNKP-222ENST00000629088 PNMA6EA0A0J9YXQ4 647 aa19.51■□□□□ 0.71
PNKP-222ENST00000629088 PHF20L1A8MW92 1017 aa19.51■□□□□ 0.71
PNKP-222ENST00000629088 BTDP43251 543 aa19.51■□□□□ 0.71
PNKP-222ENST00000629088 GSTO1P78417 241 aa19.51■□□□□ 0.71
PNKP-222ENST00000629088 MECOMQ03112 1051 aa19.51■□□□□ 0.71
PNKP-222ENST00000629088 GORABQ5T7V8 394 aa19.51■□□□□ 0.71
PNKP-222ENST00000629088 SPATA5Q8NB90 893 aa19.51■□□□□ 0.71
PNKP-222ENST00000629088 GPR108Q9NPR9 543 aa19.51■□□□□ 0.71
PNKP-222ENST00000629088 HMG20BQ9P0W2 317 aa19.51■□□□□ 0.71
PNKP-222ENST00000629088 COL2A1P02458 1487 aaPredicted RBP19.5■□□□□ 0.71
PNKP-222ENST00000629088 LDHCP07864 332 aa19.5■□□□□ 0.71
PNKP-222ENST00000629088 HOXD10P28358 340 aa19.5■□□□□ 0.71
PNKP-222ENST00000629088 GRK4P32298 578 aa19.5■□□□□ 0.71
PNKP-222ENST00000629088 GPAT2Q6NUI2 795 aa19.5■□□□□ 0.71
PNKP-222ENST00000629088 SH3BP5LQ7L8J4 393 aa19.5■□□□□ 0.71
PNKP-222ENST00000629088 SCYL3Q8IZE3 742 aa19.5■□□□□ 0.71
PNKP-222ENST00000629088 RAET1EQ8TD07 263 aa19.5■□□□□ 0.71
PNKP-222ENST00000629088 CLUAP1Q96AJ1 413 aa19.5■□□□□ 0.71
PNKP-222ENST00000629088 TNNQ9UQP3 1299 aa19.5■□□□□ 0.71
PNKP-222ENST00000629088 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.5■□□□□ 0.71
PNKP-222ENST00000629088 RANBP2P49792 3224 aaKnown RBP19.49■□□□□ 0.71
PNKP-222ENST00000629088 CTNND1O60716 968 aaKnown RBP19.49■□□□□ 0.71
PNKP-222ENST00000629088 UQCRFS1P1P0C7P4 283 aa19.49■□□□□ 0.71
PNKP-222ENST00000629088 POLA2Q14181 598 aa19.49■□□□□ 0.71
PNKP-222ENST00000629088 ZSCAN29Q8IWY8 852 aaPredicted RBP19.49■□□□□ 0.71
PNKP-222ENST00000629088 TMEM57Q8N5G2 664 aa19.49■□□□□ 0.71
PNKP-222ENST00000629088 PICK1Q9NRD5 415 aa19.49■□□□□ 0.71
PNKP-222ENST00000629088 TRIOBPQ9H2D6 2365 aa19.49■□□□□ 0.71
PNKP-222ENST00000629088 MYPNQ86TC9 1320 aa19.49■□□□□ 0.71
PNKP-222ENST00000629088 SZT2Q5T011 3432 aa19.48■□□□□ 0.71
PNKP-222ENST00000629088 TBC1D12O60347 775 aa19.48■□□□□ 0.71
PNKP-222ENST00000629088 IGSF3O75054 1194 aa19.48■□□□□ 0.71
PNKP-222ENST00000629088 CYP2C8P10632 490 aa19.48■□□□□ 0.71
PNKP-222ENST00000629088 RHBDL3P58872 404 aa19.48■□□□□ 0.71
PNKP-222ENST00000629088 FASTKD5Q7L8L6 764 aaKnown RBP19.48■□□□□ 0.71
PNKP-222ENST00000629088 ZNF384Q8TF68 577 aa19.48■□□□□ 0.71
PNKP-222ENST00000629088 NSUN4Q96CB9 384 aaKnown RBP19.48■□□□□ 0.71
PNKP-222ENST00000629088 PARK7Q99497 189 aaKnown RBP19.48■□□□□ 0.71
PNKP-222ENST00000629088 DDX4Q9NQI0 724 aaKnown RBP19.48■□□□□ 0.71
PNKP-222ENST00000629088 A0A0G2JLL6 359 aaPredicted RBP19.47■□□□□ 0.71
PNKP-222ENST00000629088 DDTLA6NHG4 134 aaPredicted RBP19.47■□□□□ 0.71
PNKP-222ENST00000629088 BCRP11274 1271 aa19.47■□□□□ 0.71
PNKP-222ENST00000629088 CCL5P13501 91 aa19.47■□□□□ 0.71
PNKP-222ENST00000629088 PTPRAP18433 802 aa19.47■□□□□ 0.71
PNKP-222ENST00000629088 PRKCZQ05513 592 aa19.47■□□□□ 0.71
PNKP-222ENST00000629088 PRRT2Q7Z6L0 340 aaPredicted RBP19.47■□□□□ 0.71
PNKP-222ENST00000629088 SSH3Q8TE77 659 aa19.47■□□□□ 0.71
PNKP-222ENST00000629088 DPF3Q92784 378 aa19.47■□□□□ 0.71
PNKP-222ENST00000629088 SLC45A1Q9Y2W3 748 aa19.47■□□□□ 0.71
PNKP-222ENST00000629088 GJB1P08034 283 aa19.46■□□□□ 0.71
PNKP-222ENST00000629088 MCAMP43121 646 aa19.46■□□□□ 0.71
PNKP-222ENST00000629088 GJA8P48165 433 aa19.46■□□□□ 0.71
PNKP-222ENST00000629088 PICALMQ13492 652 aa19.46■□□□□ 0.71
PNKP-222ENST00000629088 CHRDL2Q6WN34 429 aa19.46■□□□□ 0.71
PNKP-222ENST00000629088 BIN2Q9UBW5 565 aaPredicted RBP19.46■□□□□ 0.71
PNKP-222ENST00000629088 AFG3L2Q9Y4W6 797 aa19.46■□□□□ 0.71
PNKP-222ENST00000629088 ZHX2Q9Y6X8 837 aa19.46■□□□□ 0.71
PNKP-222ENST00000629088 SLURP2P0DP57 97 aa19.45■□□□□ 0.7
PNKP-222ENST00000629088 FCGRTP55899 365 aa19.45■□□□□ 0.7
PNKP-222ENST00000629088 ATP8B2P98198 1209 aa19.45■□□□□ 0.7
PNKP-222ENST00000629088 HNRNPUQ00839 825 aaKnown RBP eCLIP19.45■□□□□ 0.7
PNKP-222ENST00000629088 PI16Q6UXB8 463 aa19.45■□□□□ 0.7
PNKP-222ENST00000629088 UBE2Q1Q7Z7E8 422 aa19.45■□□□□ 0.7
PNKP-222ENST00000629088 NKX2-3Q8TAU0 364 aa19.45■□□□□ 0.7
PNKP-222ENST00000629088 ZNF512BQ96KM6 892 aaPredicted RBP19.45■□□□□ 0.7
PNKP-222ENST00000629088 RNF208Q9H0X6 261 aa19.45■□□□□ 0.7
PNKP-222ENST00000629088 RAI14Q9P0K7 980 aa19.45■□□□□ 0.7
PNKP-222ENST00000629088 GABRQQ9UN88 632 aa19.45■□□□□ 0.7
PNKP-222ENST00000629088 DOCK1Q14185 1865 aa19.45■□□□□ 0.7
PNKP-222ENST00000629088 TNNI3KQ59H18 835 aa19.44■□□□□ 0.7
PNKP-222ENST00000629088 CCDC158Q5M9N0 1113 aa19.44■□□□□ 0.7
PNKP-222ENST00000629088 FTSJ3Q8IY81 847 aaKnown RBP19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms