RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 SPTY2D1Q68D10 685 aaPredicted RBP30.88■■■□□ 2.53
PTPRF-216ENST00000617451 GPAT2Q6NUI2 795 aa30.88■■■□□ 2.53
PTPRF-216ENST00000617451 ECM2O94769 699 aaPredicted RBP30.87■■■□□ 2.53
PTPRF-216ENST00000617451 SCYL3Q8IZE3 742 aa30.87■■■□□ 2.53
PTPRF-216ENST00000617451 SRRDQ9UH36 339 aa30.87■■■□□ 2.53
PTPRF-216ENST00000617451 MVPQ14764 893 aaKnown RBP30.86■■■□□ 2.53
PTPRF-216ENST00000617451 ZSCAN29Q8IWY8 852 aaPredicted RBP30.86■■■□□ 2.53
PTPRF-216ENST00000617451 DDX4Q9NQI0 724 aaKnown RBP30.86■■■□□ 2.53
PTPRF-216ENST00000617451 PICK1Q9NRD5 415 aa30.86■■■□□ 2.53
PTPRF-216ENST00000617451 ZHX2Q9Y6X8 837 aa30.86■■■□□ 2.53
PTPRF-216ENST00000617451 CCER2I3L3R5 266 aa30.85■■■□□ 2.53
PTPRF-216ENST00000617451 PTPRAP18433 802 aa30.85■■■□□ 2.53
PTPRF-216ENST00000617451 HOXD10P28358 340 aa30.85■■■□□ 2.53
PTPRF-216ENST00000617451 BTDP43251 543 aa30.85■■■□□ 2.53
PTPRF-216ENST00000617451 PARK7Q99497 189 aaKnown RBP30.85■■■□□ 2.53
PTPRF-216ENST00000617451 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP30.85■■■□□ 2.53
PTPRF-216ENST00000617451 DOCK2Q92608 1830 aa30.84■■■□□ 2.53
PTPRF-216ENST00000617451 MROH7-TTC4A0A0A0MT08 1334 aa30.84■■■□□ 2.53
PTPRF-216ENST00000617451 A0A0G2JLL6 359 aaPredicted RBP30.84■■■□□ 2.53
PTPRF-216ENST00000617451 DDTLA6NHG4 134 aaPredicted RBP30.84■■■□□ 2.53
PTPRF-216ENST00000617451 FMNL1O95466 1100 aaPredicted RBP30.84■■■□□ 2.53
PTPRF-216ENST00000617451 OSBPP22059 807 aa30.84■■■□□ 2.53
PTPRF-216ENST00000617451 HABP4Q5JVS0 413 aaKnown RBP30.84■■■□□ 2.53
PTPRF-216ENST00000617451 PRRT2Q7Z6L0 340 aaPredicted RBP30.84■■■□□ 2.53
PTPRF-216ENST00000617451 CYP2C8P10632 490 aa30.83■■■□□ 2.53
PTPRF-216ENST00000617451 BCRP11274 1271 aa30.83■■■□□ 2.53
PTPRF-216ENST00000617451 MECOMQ03112 1051 aa30.83■■■□□ 2.53
PTPRF-216ENST00000617451 ERICH6Q7L0X2 663 aa30.83■■■□□ 2.53
PTPRF-216ENST00000617451 FASTKD5Q7L8L6 764 aaKnown RBP30.83■■■□□ 2.53
PTPRF-216ENST00000617451 AFG3L2Q9Y4W6 797 aa30.83■■■□□ 2.53
PTPRF-216ENST00000617451 GPR75-ASB3A0A0A6YYF3 556 aa30.82■■■□□ 2.52
PTPRF-216ENST00000617451 ZNF384Q8TF68 577 aa30.82■■■□□ 2.52
PTPRF-216ENST00000617451 NEUROD6Q96NK8 337 aa30.82■■■□□ 2.52
PTPRF-216ENST00000617451 IPO8O15397 1037 aaKnown RBP30.81■■■□□ 2.52
PTPRF-216ENST00000617451 SLURP2P0DP57 97 aa30.81■■■□□ 2.52
PTPRF-216ENST00000617451 RHBDL3P58872 404 aa30.81■■■□□ 2.52
PTPRF-216ENST00000617451 PICALMQ13492 652 aa30.81■■■□□ 2.52
PTPRF-216ENST00000617451 HMG20BQ9P0W2 317 aa30.81■■■□□ 2.52
PTPRF-216ENST00000617451 CTNND1O60716 968 aaKnown RBP30.8■■■□□ 2.52
PTPRF-216ENST00000617451 TRIM27P14373 513 aa30.8■■■□□ 2.52
PTPRF-216ENST00000617451 MTFR1Q15390 333 aa30.8■■■□□ 2.52
PTPRF-216ENST00000617451 RAET1EQ8TD07 263 aa30.8■■■□□ 2.52
PTPRF-216ENST00000617451 MYPNQ86TC9 1320 aa30.79■■■□□ 2.52
PTPRF-216ENST00000617451 NPM3O75607 178 aaKnown RBP30.79■■■□□ 2.52
PTPRF-216ENST00000617451 GNAI2P04899 355 aa30.79■■■□□ 2.52
PTPRF-216ENST00000617451 GRK4P32298 578 aa30.79■■■□□ 2.52
PTPRF-216ENST00000617451 CEP290O15078 2479 aa30.79■■■□□ 2.52
PTPRF-216ENST00000617451 SPATA5Q8NB90 893 aa30.78■■■□□ 2.52
PTPRF-216ENST00000617451 SLC45A1Q9Y2W3 748 aa30.78■■■□□ 2.52
PTPRF-216ENST00000617451 TBC1D12O60347 775 aa30.77■■■□□ 2.52
PTPRF-216ENST00000617451 FCGRTP55899 365 aa30.77■■■□□ 2.52
PTPRF-216ENST00000617451 GORABQ5T7V8 394 aa30.77■■■□□ 2.52
PTPRF-216ENST00000617451 PI16Q6UXB8 463 aa30.77■■■□□ 2.52
PTPRF-216ENST00000617451 ATF7IPQ6VMQ6 1270 aa30.77■■■□□ 2.52
PTPRF-216ENST00000617451 GADL1Q6ZQY3 521 aa30.77■■■□□ 2.52
PTPRF-216ENST00000617451 NSUN4Q96CB9 384 aaKnown RBP30.77■■■□□ 2.52
PTPRF-216ENST00000617451 TNNQ9UQP3 1299 aa30.77■■■□□ 2.52
PTPRF-216ENST00000617451 GSTO1P78417 241 aa30.76■■■□□ 2.51
PTPRF-216ENST00000617451 TBC1D9Q6ZT07 1266 aa30.76■■■□□ 2.51
PTPRF-216ENST00000617451 PNMA6EA0A0J9YXQ4 647 aa30.75■■■□□ 2.51
PTPRF-216ENST00000617451 BCAR3O75815 825 aa30.75■■■□□ 2.51
PTPRF-216ENST00000617451 MAP4K4O95819 1239 aaPredicted RBP30.75■■■□□ 2.51
PTPRF-216ENST00000617451 LDHCP07864 332 aa30.75■■■□□ 2.51
PTPRF-216ENST00000617451 ARID4AP29374 1257 aaPredicted RBP30.75■■■□□ 2.51
PTPRF-216ENST00000617451 PRKCZQ05513 592 aa30.75■■■□□ 2.51
PTPRF-216ENST00000617451 SHISA4Q96DD7 197 aa30.75■■■□□ 2.51
PTPRF-216ENST00000617451 DOCK1Q14185 1865 aa30.74■■■□□ 2.51
PTPRF-216ENST00000617451 TRIM75PA6NK02 468 aa30.74■■■□□ 2.51
PTPRF-216ENST00000617451 G3BP1Q13283 466 aaKnown RBP eCLIP30.74■■■□□ 2.51
PTPRF-216ENST00000617451 FRAT1Q92837 279 aaPredicted RBP30.74■■■□□ 2.51
PTPRF-216ENST00000617451 FRMD4AQ9P2Q2 1039 aaPredicted RBP30.74■■■□□ 2.51
PTPRF-216ENST00000617451 PTPRFP10586 1907 aa30.73■■■□□ 2.51
PTPRF-216ENST00000617451 PHIPQ8WWQ0 1821 aa30.73■■■□□ 2.51
PTPRF-216ENST00000617451 CCL5P13501 91 aa30.72■■■□□ 2.51
PTPRF-216ENST00000617451 CCDC84Q86UT8 332 aaPredicted RBP30.72■■■□□ 2.51
PTPRF-216ENST00000617451 NKX2-3Q8TAU0 364 aa30.72■■■□□ 2.51
PTPRF-216ENST00000617451 CLUAP1Q96AJ1 413 aa30.72■■■□□ 2.51
PTPRF-216ENST00000617451 XPO5Q9HAV4 1204 aaKnown RBP eCLIP30.72■■■□□ 2.512e-9■■■■□ 24.5
PTPRF-216ENST00000617451 RAI14Q9P0K7 980 aa30.72■■■□□ 2.51
PTPRF-216ENST00000617451 GABRQQ9UN88 632 aa30.72■■■□□ 2.51
PTPRF-216ENST00000617451 GJB1P08034 283 aa30.71■■■□□ 2.51
PTPRF-216ENST00000617451 MCAMP43121 646 aa30.71■■■□□ 2.51
PTPRF-216ENST00000617451 BIN2Q9UBW5 565 aaPredicted RBP30.71■■■□□ 2.51
PTPRF-216ENST00000617451 COL2A1P02458 1487 aaPredicted RBP30.7■■■□□ 2.51
PTPRF-216ENST00000617451 MGAMO43451 1857 aa30.7■■■□□ 2.51
PTPRF-216ENST00000617451 FAM196BA6NMK8 535 aa30.7■■■□□ 2.51
PTPRF-216ENST00000617451 UQCRFS1P1P0C7P4 283 aa30.7■■■□□ 2.51
PTPRF-216ENST00000617451 GJA8P48165 433 aa30.7■■■□□ 2.51
PTPRF-216ENST00000617451 SLAIN1Q8ND83 568 aa30.7■■■□□ 2.51
PTPRF-216ENST00000617451 SMCR8Q8TEV9 937 aaPredicted RBP30.7■■■□□ 2.51
PTPRF-216ENST00000617451 OSBPL5Q9H0X9 879 aaPredicted RBP30.7■■■□□ 2.51
PTPRF-216ENST00000617451 AGTPBP1Q9UPW5 1226 aa30.7■■■□□ 2.51
PTPRF-216ENST00000617451 UBXN2AP68543 259 aa30.69■■■□□ 2.5
PTPRF-216ENST00000617451 RNF208Q9H0X6 261 aa30.69■■■□□ 2.5
PTPRF-216ENST00000617451 H0YGN5 161 aa30.68■■■□□ 2.5
PTPRF-216ENST00000617451 LRP2BPQ9P2M1 347 aa30.68■■■□□ 2.5
PTPRF-216ENST00000617451 COLQQ9Y215 455 aaPredicted RBP30.68■■■□□ 2.5
PTPRF-216ENST00000617451 FLT3LGP49771 235 aa30.67■■■□□ 2.5
PTPRF-216ENST00000617451 UBE2Q1Q7Z7E8 422 aa30.67■■■□□ 2.5
PTPRF-216ENST00000617451 TREML2Q5T2D2 321 aa30.66■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms