RNA–Protein interactions for RNA: ENST00000615136.4

MMP28-204, Transcript of matrix metallopeptidase 28, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MMP28, Length 2,033 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-204ENST00000615136 FAM217BQ9NTX9 383 aaPredicted RBP22.34■■□□□ 1.17
MMP28-204ENST00000615136 ORC3Q9UBD5 711 aaPredicted RBP22.34■■□□□ 1.17
MMP28-204ENST00000615136 ANKRD31Q8N7Z5 1873 aa22.34■■□□□ 1.17
MMP28-204ENST00000615136 PLSCR1O15162 318 aa22.33■■□□□ 1.17
MMP28-204ENST00000615136 RBM17Q96I25 401 aaKnown RBP22.33■■□□□ 1.17
MMP28-204ENST00000615136 SPATA32Q96LK8 384 aa22.33■■□□□ 1.17
MMP28-204ENST00000615136 AIFM3Q96NN9 605 aa22.33■■□□□ 1.17
MMP28-204ENST00000615136 ZSCAN16Q9H4T2 348 aaPredicted RBP22.33■■□□□ 1.17
MMP28-204ENST00000615136 MAST2Q6P0Q8 1798 aa22.33■■□□□ 1.16
MMP28-204ENST00000615136 CCDC88AQ3V6T2 1871 aa22.33■■□□□ 1.16
MMP28-204ENST00000615136 CPLX1O14810 134 aa22.33■■□□□ 1.16
MMP28-204ENST00000615136 NFXL1Q6ZNB6 911 aa22.33■■□□□ 1.16
MMP28-204ENST00000615136 DHX16O60231 1041 aaKnown RBP22.32■■□□□ 1.16
MMP28-204ENST00000615136 UFL1O94874 794 aa22.32■■□□□ 1.16
MMP28-204ENST00000615136 CEBPZQ03701 1054 aaKnown RBP22.32■■□□□ 1.16
MMP28-204ENST00000615136 BRIP1Q9BX63 1249 aa22.32■■□□□ 1.16
MMP28-204ENST00000615136 ANAPC4Q9UJX5 808 aa22.32■■□□□ 1.16
MMP28-204ENST00000615136 KIF3AQ9Y496 699 aa22.32■■□□□ 1.16
MMP28-204ENST00000615136 UBE2Q2LH0YL09 131 aa22.31■■□□□ 1.16
MMP28-204ENST00000615136 HOXA10P31260 410 aaPredicted RBP22.31■■□□□ 1.16
MMP28-204ENST00000615136 LIFRP42702 1097 aa22.31■■□□□ 1.16
MMP28-204ENST00000615136 CTR9Q6PD62 1173 aa22.31■■□□□ 1.16
MMP28-204ENST00000615136 PHKBQ93100 1093 aa22.31■■□□□ 1.16
MMP28-204ENST00000615136 PGBD1Q96JS3 809 aa22.31■■□□□ 1.16
MMP28-204ENST00000615136 KLRG2A4D1S0 409 aaPredicted RBP22.31■■□□□ 1.16
MMP28-204ENST00000615136 ZBTB43O43298 467 aa22.31■■□□□ 1.16
MMP28-204ENST00000615136 LIG1P18858 919 aa22.31■■□□□ 1.16
MMP28-204ENST00000615136 NTRK3Q16288 839 aa22.31■■□□□ 1.16
MMP28-204ENST00000615136 ECM29Q5VYK3 1845 aa22.3■■□□□ 1.16
MMP28-204ENST00000615136 USP17L12C9JPN9 530 aa22.3■■□□□ 1.16
MMP28-204ENST00000615136 USP17L21D6R901 530 aa22.3■■□□□ 1.16
MMP28-204ENST00000615136 RANBP6O60518 1105 aaKnown RBP22.3■■□□□ 1.16
MMP28-204ENST00000615136 OFD1O75665 1012 aa22.3■■□□□ 1.16
MMP28-204ENST00000615136 CHMP4CQ96CF2 233 aa22.3■■□□□ 1.16
MMP28-204ENST00000615136 NUP62CLQ9H1M0 184 aa22.3■■□□□ 1.16
MMP28-204ENST00000615136 POLLQ9UGP5 575 aa22.3■■□□□ 1.16
MMP28-204ENST00000615136 USP25Q9UHP3 1055 aa22.3■■□□□ 1.16
MMP28-204ENST00000615136 MYH2Q9UKX2 1941 aa22.3■■□□□ 1.16
MMP28-204ENST00000615136 PRDM1O75626 825 aa22.3■■□□□ 1.16
MMP28-204ENST00000615136 C15orf52Q6ZUT6 534 aaKnown RBP22.3■■□□□ 1.16
MMP28-204ENST00000615136 C8orf76Q96K31 380 aa22.3■■□□□ 1.16
MMP28-204ENST00000615136 DCP1AQ9NPI6 582 aaPredicted RBP22.3■■□□□ 1.16
MMP28-204ENST00000615136 DUOX1Q9NRD9 1551 aa22.29■■□□□ 1.16
MMP28-204ENST00000615136 GOLGA8AA7E2F4 631 aa22.29■■□□□ 1.16
MMP28-204ENST00000615136 DIXDC1Q155Q3 683 aa22.29■■□□□ 1.16
MMP28-204ENST00000615136 ZNF804AQ7Z570 1209 aa22.29■■□□□ 1.16
MMP28-204ENST00000615136 DZIP1Q86YF9 867 aaKnown RBP22.29■■□□□ 1.16
MMP28-204ENST00000615136 FBXO18Q8NFZ0 1043 aa22.29■■□□□ 1.16
MMP28-204ENST00000615136 USP28Q96RU2 1077 aa22.29■■□□□ 1.16
MMP28-204ENST00000615136 RNF41Q9H4P4 317 aaPredicted RBP22.29■■□□□ 1.16
MMP28-204ENST00000615136 SLC12A7Q9Y666 1083 aa22.29■■□□□ 1.16
MMP28-204ENST00000615136 ZBTB22O15209 634 aa22.28■■□□□ 1.16
MMP28-204ENST00000615136 CCDC192P0DO97 292 aa22.28■■□□□ 1.16
MMP28-204ENST00000615136 CYP2D6P10635 497 aa22.28■■□□□ 1.16
MMP28-204ENST00000615136 OLFM4Q6UX06 510 aa22.28■■□□□ 1.16
MMP28-204ENST00000615136 CD209Q9NNX6 404 aa22.28■■□□□ 1.16
MMP28-204ENST00000615136 DDX19AQ9NUU7 478 aaKnown RBP22.28■■□□□ 1.16
MMP28-204ENST00000615136 RGS17Q9UGC6 210 aaPredicted RBP22.28■■□□□ 1.16
MMP28-204ENST00000615136 GGA1Q9UJY5 639 aa22.28■■□□□ 1.16
MMP28-204ENST00000615136 TAOK2Q9UL54 1235 aa22.28■■□□□ 1.16
MMP28-204ENST00000615136 CCDC69A6NI79 296 aa22.28■■□□□ 1.16
MMP28-204ENST00000615136 BBOX1O75936 387 aa22.28■■□□□ 1.16
MMP28-204ENST00000615136 RXRBP28702 533 aa22.28■■□□□ 1.16
MMP28-204ENST00000615136 MAP3K11Q16584 847 aa22.28■■□□□ 1.16
MMP28-204ENST00000615136 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.28■■□□□ 1.16
MMP28-204ENST00000615136 RBM43Q6ZSC3 357 aaKnown RBP22.28■■□□□ 1.16
MMP28-204ENST00000615136 TBC1D16Q8TBP0 767 aa22.28■■□□□ 1.16
MMP28-204ENST00000615136 CRAMP1Q96RY5 1269 aa22.28■■□□□ 1.16
MMP28-204ENST00000615136 LTBP1Q14766 1721 aa22.27■■□□□ 1.16
MMP28-204ENST00000615136 KIF28PB7ZC32 967 aa22.27■■□□□ 1.16
MMP28-204ENST00000615136 LDHBP07195 334 aaKnown RBP22.27■■□□□ 1.16
MMP28-204ENST00000615136 ATP2B4P23634 1241 aa22.27■■□□□ 1.16
MMP28-204ENST00000615136 WTAPQ15007 396 aa22.27■■□□□ 1.16
MMP28-204ENST00000615136 SLC4A8Q2Y0W8 1093 aa22.27■■□□□ 1.16
MMP28-204ENST00000615136 WDR66Q8TBY9 1149 aa22.27■■□□□ 1.16
MMP28-204ENST00000615136 GOLGA6L4A6NEF3 574 aa22.26■■□□□ 1.15
MMP28-204ENST00000615136 SEC23AQ15436 765 aa22.26■■□□□ 1.15
MMP28-204ENST00000615136 MSL1Q68DK7 614 aa22.26■■□□□ 1.15
MMP28-204ENST00000615136 CRNKL1Q9BZJ0 848 aaKnown RBP22.26■■□□□ 1.15
MMP28-204ENST00000615136 KIAA1551Q9HCM1 1747 aa22.26■■□□□ 1.15
MMP28-204ENST00000615136 DACT1Q9NYF0 836 aa22.26■■□□□ 1.15
MMP28-204ENST00000615136 NRXN2Q9P2S2 1712 aa22.26■■□□□ 1.15
MMP28-204ENST00000615136 LRRC37AA6NMS7 1700 aa22.26■■□□□ 1.15
MMP28-204ENST00000615136 SPTY2D1Q68D10 685 aaPredicted RBP22.26■■□□□ 1.15
MMP28-204ENST00000615136 CFAP45Q9UL16 551 aa22.26■■□□□ 1.15
MMP28-204ENST00000615136 TNKSO95271 1327 aa22.25■■□□□ 1.15
MMP28-204ENST00000615136 ADCY5O95622 1261 aa22.25■■□□□ 1.15
MMP28-204ENST00000615136 POLR3DP05423 398 aaPredicted RBP22.25■■□□□ 1.15
MMP28-204ENST00000615136 PTMAP06454 111 aaKnown RBP22.25■■□□□ 1.15
MMP28-204ENST00000615136 CMTR1Q8N1G2 835 aaKnown RBP22.25■■□□□ 1.15
MMP28-204ENST00000615136 NLGN1Q8N2Q7 840 aa22.25■■□□□ 1.15
MMP28-204ENST00000615136 ESR2Q92731 530 aa22.25■■□□□ 1.15
MMP28-204ENST00000615136 PODXL2Q9NZ53 605 aa22.25■■□□□ 1.15
MMP28-204ENST00000615136 TNS1Q9HBL0 1735 aaKnown RBP22.25■■□□□ 1.15
MMP28-204ENST00000615136 LAMB1P07942 1786 aa22.25■■□□□ 1.15
MMP28-204ENST00000615136 FGRP09769 529 aa22.24■■□□□ 1.15
MMP28-204ENST00000615136 ALG1Q9BT22 464 aa22.24■■□□□ 1.15
MMP28-204ENST00000615136 CLSTN2Q9H4D0 955 aa22.24■■□□□ 1.15
MMP28-204ENST00000615136 PPEF1O14829 653 aaPredicted RBP22.24■■□□□ 1.15
MMP28-204ENST00000615136 MMP10P09238 476 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms