RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 CCDC148Q8NFR7 591 aa14.35□□□□□ -0.11
LIG1-221ENST00000613670 CCDC47Q96A33 483 aaKnown RBP14.35□□□□□ -0.11
LIG1-221ENST00000613670 GBP3Q9H0R5 595 aa14.35□□□□□ -0.11
LIG1-221ENST00000613670 ARMT1Q9H993 441 aa14.35□□□□□ -0.11
LIG1-221ENST00000613670 INCENPQ9NQS7 918 aa14.35□□□□□ -0.11
LIG1-221ENST00000613670 KANK3Q6NY19 840 aa14.35□□□□□ -0.11
LIG1-221ENST00000613670 GDAP1L1Q96MZ0 367 aa14.35□□□□□ -0.11
LIG1-221ENST00000613670 PXDNLA1KZ92 1463 aa14.35□□□□□ -0.11
LIG1-221ENST00000613670 MATR3P43243 847 aaKnown RBP eCLIP14.35□□□□□ -0.111e-9■■■■■ 38.3
LIG1-221ENST00000613670 ZNF532Q9HCE3 1301 aa14.34□□□□□ -0.11
LIG1-221ENST00000613670 FOXN1O15353 648 aa14.34□□□□□ -0.11
LIG1-221ENST00000613670 STARD3NLO95772 234 aa14.34□□□□□ -0.11
LIG1-221ENST00000613670 EXOSC10Q01780 885 aaKnown RBP14.34□□□□□ -0.11
LIG1-221ENST00000613670 ZNF174Q15697 407 aa14.34□□□□□ -0.11
LIG1-221ENST00000613670 ZSCAN26Q16670 478 aa14.34□□□□□ -0.11
LIG1-221ENST00000613670 SAMSN1Q9NSI8 373 aaKnown RBP14.34□□□□□ -0.11
LIG1-221ENST00000613670 GPR161Q8N6U8 529 aaKnown RBP14.34□□□□□ -0.11
LIG1-221ENST00000613670 ZCRB1Q8TBF4 217 aaKnown RBP14.34□□□□□ -0.11
LIG1-221ENST00000613670 CEMIPQ8WUJ3 1361 aa14.34□□□□□ -0.11
LIG1-221ENST00000613670 ANKRD26Q9UPS8 1709 aa14.34□□□□□ -0.11
LIG1-221ENST00000613670 VWA3AA6NCI4 1184 aa14.34□□□□□ -0.11
LIG1-221ENST00000613670 IKBKBO14920 756 aa14.34□□□□□ -0.11
LIG1-221ENST00000613670 MLKLQ8NB16 471 aa14.34□□□□□ -0.11
LIG1-221ENST00000613670 NLRP5P59047 1200 aa14.33□□□□□ -0.12
LIG1-221ENST00000613670 APOA5Q6Q788 366 aa14.33□□□□□ -0.12
LIG1-221ENST00000613670 VSTM4Q8IW00 320 aa14.33□□□□□ -0.12
LIG1-221ENST00000613670 CEP112Q8N8E3 955 aa14.33□□□□□ -0.12
LIG1-221ENST00000613670 DRC1Q96MC2 740 aa14.33□□□□□ -0.12
LIG1-221ENST00000613670 PARD6BQ9BYG5 372 aa14.33□□□□□ -0.12
LIG1-221ENST00000613670 DEF6Q9H4E7 631 aa14.33□□□□□ -0.12
LIG1-221ENST00000613670 ITGA6P23229 1130 aa14.33□□□□□ -0.12
LIG1-221ENST00000613670 SMYD4Q8IYR2 804 aaPredicted RBP14.33□□□□□ -0.12
LIG1-221ENST00000613670 IRX2Q9BZI1 471 aaPredicted RBP14.33□□□□□ -0.12
LIG1-221ENST00000613670 ADAMTS13Q76LX8 1427 aa14.33□□□□□ -0.12
LIG1-221ENST00000613670 PDIA6Q15084 440 aa14.33□□□□□ -0.12
LIG1-221ENST00000613670 GPIHBP1Q8IV16 184 aa14.33□□□□□ -0.12
LIG1-221ENST00000613670 SMARCC1Q92922 1105 aaPredicted RBP14.33□□□□□ -0.12
LIG1-221ENST00000613670 PLIN2Q99541 437 aa14.33□□□□□ -0.12
LIG1-221ENST00000613670 HINFPQ9BQA5 517 aa14.32□□□□□ -0.12
LIG1-221ENST00000613670 PHLPP2Q6ZVD8 1323 aa14.32□□□□□ -0.12
LIG1-221ENST00000613670 PRDM1O75626 825 aa14.32□□□□□ -0.12
LIG1-221ENST00000613670 STIM1Q13586 685 aa14.32□□□□□ -0.12
LIG1-221ENST00000613670 RILPL1Q5EBL4 403 aa14.32□□□□□ -0.12
LIG1-221ENST00000613670 TOGARAM2Q6ZUX3 1019 aa14.32□□□□□ -0.12
LIG1-221ENST00000613670 NOSTRINQ8IVI9 506 aa14.32□□□□□ -0.12
LIG1-221ENST00000613670 WDR24Q96S15 920 aa14.32□□□□□ -0.12
LIG1-221ENST00000613670 SLF1Q9BQI6 1058 aa14.32□□□□□ -0.12
LIG1-221ENST00000613670 RABEP2Q9H5N1 569 aa14.32□□□□□ -0.12
LIG1-221ENST00000613670 JADE2Q9NQC1 790 aa14.32□□□□□ -0.12
LIG1-221ENST00000613670 SOWAHDA6NJG2 315 aa14.32□□□□□ -0.12
LIG1-221ENST00000613670 SLC5A1P13866 664 aa14.32□□□□□ -0.12
LIG1-221ENST00000613670 NR5A1Q13285 461 aa14.32□□□□□ -0.12
LIG1-221ENST00000613670 SCARF1Q14162 830 aa14.32□□□□□ -0.12
LIG1-221ENST00000613670 NBPF11Q86T75 865 aa14.32□□□□□ -0.12
LIG1-221ENST00000613670 TSPYL1Q9H0U9 437 aa14.32□□□□□ -0.12
LIG1-221ENST00000613670 CTNND2Q9UQB3 1225 aa14.32□□□□□ -0.12
LIG1-221ENST00000613670 ZMYM6O95789 1325 aa14.31□□□□□ -0.12
LIG1-221ENST00000613670 H0YHG0 523 aa14.31□□□□□ -0.12
LIG1-221ENST00000613670 CCDC181Q5TID7 509 aa14.31□□□□□ -0.12
LIG1-221ENST00000613670 TMEM87BQ96K49 555 aa14.31□□□□□ -0.12
LIG1-221ENST00000613670 KRT23Q9C075 422 aa14.31□□□□□ -0.12
LIG1-221ENST00000613670 BLZF1Q9H2G9 400 aa14.31□□□□□ -0.12
LIG1-221ENST00000613670 NPHP4O75161 1426 aaPredicted RBP14.31□□□□□ -0.12
LIG1-221ENST00000613670 CLTCQ00610 1675 aaKnown RBP14.31□□□□□ -0.12
LIG1-221ENST00000613670 POTEB2H3BUK9 544 aa14.31□□□□□ -0.12
LIG1-221ENST00000613670 HDXQ7Z353 690 aa14.31□□□□□ -0.12
LIG1-221ENST00000613670 CATIPQ7Z7H3 387 aa14.31□□□□□ -0.12
LIG1-221ENST00000613670 PDE11AQ9HCR9 933 aa14.31□□□□□ -0.12
LIG1-221ENST00000613670 TAB2Q9NYJ8 693 aa14.31□□□□□ -0.12
LIG1-221ENST00000613670 VPS54Q9P1Q0 977 aa14.31□□□□□ -0.12
LIG1-221ENST00000613670 CASP1P29466 404 aa14.31□□□□□ -0.12
LIG1-221ENST00000613670 SHC4Q6S5L8 630 aa14.31□□□□□ -0.12
LIG1-221ENST00000613670 IQCA1Q86XH1 822 aa14.31□□□□□ -0.12
LIG1-221ENST00000613670 CTCFLQ8NI51 663 aaPredicted RBP14.31□□□□□ -0.12
LIG1-221ENST00000613670 EEF2KMTQ96G04 330 aa14.31□□□□□ -0.12
LIG1-221ENST00000613670 SYNRGQ9UMZ2 1314 aa14.3□□□□□ -0.12
LIG1-221ENST00000613670 IRS4O14654 1257 aaPredicted RBP14.3□□□□□ -0.12
LIG1-221ENST00000613670 STX10O60499 249 aa14.3□□□□□ -0.12
LIG1-221ENST00000613670 CYP7A1P22680 504 aa14.3□□□□□ -0.12
LIG1-221ENST00000613670 LONRF2Q1L5Z9 754 aa14.3□□□□□ -0.12
LIG1-221ENST00000613670 CTR9Q6PD62 1173 aa14.3□□□□□ -0.12
LIG1-221ENST00000613670 RNF41Q9H4P4 317 aaPredicted RBP14.3□□□□□ -0.12
LIG1-221ENST00000613670 DENND2AQ9ULE3 1009 aa14.3□□□□□ -0.12
LIG1-221ENST00000613670 RIMS1Q86UR5 1692 aaKnown RBP14.3□□□□□ -0.12
LIG1-221ENST00000613670 RFX5P48382 616 aaPredicted RBP14.3□□□□□ -0.12
LIG1-221ENST00000613670 UBXN1Q04323 297 aa14.3□□□□□ -0.12
LIG1-221ENST00000613670 FKBP15Q5T1M5 1219 aa14.3□□□□□ -0.12
LIG1-221ENST00000613670 CTAGE1Q96RT6 745 aa14.3□□□□□ -0.12
LIG1-221ENST00000613670 CENPHQ9H3R5 247 aa14.3□□□□□ -0.12
LIG1-221ENST00000613670 C19orf44Q9H6X5 657 aa14.3□□□□□ -0.12
LIG1-221ENST00000613670 MAN1B1Q9UKM7 699 aa14.3□□□□□ -0.12
LIG1-221ENST00000613670 MTF1Q14872 753 aa14.3□□□□□ -0.12
LIG1-221ENST00000613670 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.3□□□□□ -0.12
LIG1-221ENST00000613670 RASSF4Q9H2L5 321 aa14.3□□□□□ -0.12
LIG1-221ENST00000613670 V9GY48 417 aaPredicted RBP14.3□□□□□ -0.12
LIG1-221ENST00000613670 ERBB3P21860 1342 aa14.29□□□□□ -0.12
LIG1-221ENST00000613670 MCM7P33993 719 aa14.29□□□□□ -0.12
LIG1-221ENST00000613670 KRT9P35527 623 aa14.29□□□□□ -0.12
LIG1-221ENST00000613670 ATG9AQ7Z3C6 839 aa14.29□□□□□ -0.12
LIG1-221ENST00000613670 TRIM47Q96LD4 638 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms