RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, human

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-223	ENST00000611659	AXIN2	Q9Y2T1	843 aa		13.65	□□□□□ -0.22
TPM3-223	ENST00000611659	LTN1	O94822	1766 aa		13.65	□□□□□ -0.22
TPM3-223	ENST00000611659	UBE2Q2L	H0YL09	131 aa		13.65	□□□□□ -0.22
TPM3-223	ENST00000611659	KLHL10	Q6JEL2	608 aa		13.65	□□□□□ -0.22
TPM3-223	ENST00000611659	PNKP	Q96T60	521 aa		13.65	□□□□□ -0.22
TPM3-223	ENST00000611659	HOOK1	Q9UJC3	728 aa	Known RBP	13.65	□□□□□ -0.22
TPM3-223	ENST00000611659	POLR2D	O15514	142 aa	Known RBP	13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	APP	P05067	770 aa		13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	PRR29	P0C7W0	189 aa		13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	NFXL1	Q6ZNB6	911 aa		13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	MYL10	Q9BUA6	226 aa		13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	PUS7L	Q9H0K6	701 aa	Known RBP	13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	ANKZF1	Q9H8Y5	726 aa		13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	ABCB6	Q9NP58	842 aa		13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	AKR1B15	C9JRZ8	316 aa	Predicted RBP	13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	ANKRD65	E5RJM6	399 aa		13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	FOXP2	O15409	715 aa		13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	ERLIN1	O75477	346 aa		13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	EIF3J	O75822	258 aa	Known RBP	13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	IL15	P40933	162 aa	Predicted RBP	13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	POSTN	Q15063	836 aa		13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	FOXR1	Q6PIV2	292 aa		13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	CPLX2	Q6PUV4	134 aa	Known RBP	13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	PPFIBP1	Q86W92	1011 aa		13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	PUS3	Q9BZE2	481 aa	Known RBP	13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	SLC52A2	Q9HAB3	445 aa		13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	RGPD2	P0DJD1	1756 aa		13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	MAP2K7	O14733	419 aa		13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	HSP90B2P	Q58FF3	399 aa		13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	BEND6	Q5SZJ8	279 aa	Predicted RBP	13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	DDX17	Q92841	729 aa	Known RBP	13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	MAP3K14	Q99558	947 aa		13.64	□□□□□ -0.23
TPM3-223	ENST00000611659	TEX33	O43247	280 aa		13.63	□□□□□ -0.23
TPM3-223	ENST00000611659	MYO1B	O43795	1136 aa		13.63	□□□□□ -0.23
TPM3-223	ENST00000611659	FOXO4	P98177	505 aa		13.63	□□□□□ -0.23
TPM3-223	ENST00000611659	GRIN1	Q05586	938 aa		13.63	□□□□□ -0.23
TPM3-223	ENST00000611659	KRI1	Q8N9T8	703 aa	Known RBP	13.63	□□□□□ -0.23
TPM3-223	ENST00000611659	PSD3	Q9NYI0	1048 aa		13.63	□□□□□ -0.23
TPM3-223	ENST00000611659	SERTAD1	Q9UHV2	236 aa		13.63	□□□□□ -0.23
TPM3-223	ENST00000611659	MARF1	Q9Y4F3	1742 aa	Known RBP	13.63	□□□□□ -0.23
TPM3-223	ENST00000611659	SNRPA1	P09661	255 aa	Known RBP	13.63	□□□□□ -0.23
TPM3-223	ENST00000611659	STX17	P56962	302 aa		13.63	□□□□□ -0.23
TPM3-223	ENST00000611659	PI16	Q6UXB8	463 aa		13.63	□□□□□ -0.23
TPM3-223	ENST00000611659	RAD9B	Q6WBX8	426 aa		13.63	□□□□□ -0.23
TPM3-223	ENST00000611659	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.63	□□□□□ -0.23
TPM3-223	ENST00000611659	FBXL16	Q8N461	479 aa		13.63	□□□□□ -0.23
TPM3-223	ENST00000611659	CEP112	Q8N8E3	955 aa		13.63	□□□□□ -0.23
TPM3-223	ENST00000611659	RAPGEF4	Q8WZA2	1011 aa		13.63	□□□□□ -0.23
TPM3-223	ENST00000611659	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.63	□□□□□ -0.23
TPM3-223	ENST00000611659	CDC23	Q9UJX2	597 aa		13.63	□□□□□ -0.23
TPM3-223	ENST00000611659	LMO7	Q8WWI1	1683 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	CDKL5	O76039	1030 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	TRH	P20396	242 aa	Predicted RBP	13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	ADORA1	P30542	326 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	IARS	P41252	1262 aa	Known RBP	13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	PLEKHA4	Q9H4M7	779 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	SENP2	Q9HC62	589 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	RNF216	Q9NWF9	866 aa	Predicted RBP	13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	ANGEL1	Q9UNK9	670 aa	Known RBP	13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	EYA2	O00167	538 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	GPAA1	O43292	621 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	RBL2	Q08999	1139 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	GOLGA6L1	Q8N7Z2	621 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	IGSF22	Q8N9C0	903 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	CEP126	Q9P2H0	1117 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	DACH1	Q9UI36	760 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	ADGRG1	Q9Y653	693 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	ZMYM6	O95789	1325 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	IVL	P07476	585 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	CASP7	P55210	303 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	CCDC82	Q8N4S0	544 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	NKX2-3	Q8TAU0	364 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	CDC5L	Q99459	802 aa	Known RBP	13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	SLC26A6	Q9BXS9	759 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	NLRP2	Q9NX02	1062 aa		13.62	□□□□□ -0.23
TPM3-223	ENST00000611659	CTAGE9	A4FU28	777 aa		13.61	□□□□□ -0.23
TPM3-223	ENST00000611659	ZNF18	P17022	549 aa		13.61	□□□□□ -0.23
TPM3-223	ENST00000611659	ZAP70	P43403	619 aa		13.61	□□□□□ -0.23
TPM3-223	ENST00000611659	VSNL1	P62760	191 aa		13.61	□□□□□ -0.23
TPM3-223	ENST00000611659	SCARF1	Q14162	830 aa		13.61	□□□□□ -0.23
TPM3-223	ENST00000611659	NOM1	Q5C9Z4	860 aa	Known RBP	13.61	□□□□□ -0.23
TPM3-223	ENST00000611659	SLC9C2	Q5TAH2	1124 aa		13.61	□□□□□ -0.23
TPM3-223	ENST00000611659	ARHGEF25	Q86VW2	580 aa		13.61	□□□□□ -0.23
TPM3-223	ENST00000611659	MLKL	Q8NB16	471 aa		13.61	□□□□□ -0.23
TPM3-223	ENST00000611659	CYB5R4	Q7L1T6	521 aa		13.61	□□□□□ -0.23
TPM3-223	ENST00000611659	SLC35F6	Q8N357	371 aa		13.61	□□□□□ -0.23
TPM3-223	ENST00000611659	RGS22	Q8NE09	1264 aa		13.61	□□□□□ -0.23
TPM3-223	ENST00000611659	ENOX1	Q8TC92	643 aa	Known RBP	13.61	□□□□□ -0.23
TPM3-223	ENST00000611659	BTBD18	B2RXH4	712 aa		13.6	□□□□□ -0.23
TPM3-223	ENST00000611659		B4E1Z4	1266 aa		13.6	□□□□□ -0.23
TPM3-223	ENST00000611659	CASP8	Q14790	479 aa		13.6	□□□□□ -0.23
TPM3-223	ENST00000611659	NR1I3	Q14994	352 aa		13.6	□□□□□ -0.23
TPM3-223	ENST00000611659	LRP10	Q7Z4F1	713 aa		13.6	□□□□□ -0.23
TPM3-223	ENST00000611659	ATG3	Q9NT62	314 aa		13.6	□□□□□ -0.23
TPM3-223	ENST00000611659	L1RE1	Q9UN81	338 aa		13.6	□□□□□ -0.23
TPM3-223	ENST00000611659	GOLGA8A	A7E2F4	631 aa		13.6	□□□□□ -0.23
TPM3-223	ENST00000611659	POTEB2	H3BUK9	544 aa		13.6	□□□□□ -0.23
TPM3-223	ENST00000611659	ZBTB43	O43298	467 aa		13.6	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms