RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 CTNND1O60716 968 aaKnown RBP11.85□□□□□ -0.51
VRK3-224ENST00000601849 GJB1P08034 283 aa11.85□□□□□ -0.51
VRK3-224ENST00000601849 PHKA1P46020 1223 aa11.85□□□□□ -0.51
VRK3-224ENST00000601849 TIMM10P62072 90 aa11.85□□□□□ -0.51
VRK3-224ENST00000601849 SMCR8Q8TEV9 937 aaPredicted RBP11.85□□□□□ -0.51
VRK3-224ENST00000601849 FAM163AQ96GL9 167 aaPredicted RBP11.85□□□□□ -0.51
VRK3-224ENST00000601849 NEUROD6Q96NK8 337 aa11.85□□□□□ -0.51
VRK3-224ENST00000601849 PNMA3Q9UL41 463 aa11.85□□□□□ -0.51
VRK3-224ENST00000601849 SLC45A1Q9Y2W3 748 aa11.85□□□□□ -0.51
VRK3-224ENST00000601849 NR2E3Q9Y5X4 410 aa11.85□□□□□ -0.51
VRK3-224ENST00000601849 AK9Q5TCS8 1911 aa11.85□□□□□ -0.51
VRK3-224ENST00000601849 IPO8O15397 1037 aaKnown RBP11.84□□□□□ -0.51
VRK3-224ENST00000601849 PTPRAP18433 802 aa11.84□□□□□ -0.51
VRK3-224ENST00000601849 GJA8P48165 433 aa11.84□□□□□ -0.51
VRK3-224ENST00000601849 PABPC4Q13310 644 aaKnown RBP eCLIP11.84□□□□□ -0.51
VRK3-224ENST00000601849 PICALMQ13492 652 aa11.84□□□□□ -0.51
VRK3-224ENST00000601849 NOL10Q9BSC4 688 aaKnown RBP11.84□□□□□ -0.51
VRK3-224ENST00000601849 TBC1D2Q9BYX2 928 aa11.84□□□□□ -0.51
VRK3-224ENST00000601849 COLQQ9Y215 455 aaPredicted RBP11.84□□□□□ -0.51
VRK3-224ENST00000601849 PDS5AQ29RF7 1337 aaKnown RBP11.84□□□□□ -0.51
VRK3-224ENST00000601849 A0A0G2JLL6 359 aaPredicted RBP11.83□□□□□ -0.52
VRK3-224ENST00000601849 PHF20L1A8MW92 1017 aa11.83□□□□□ -0.52
VRK3-224ENST00000601849 H0YGN5 161 aa11.83□□□□□ -0.52
VRK3-224ENST00000601849 TNPO2O14787 897 aaKnown RBP11.83□□□□□ -0.52
VRK3-224ENST00000601849 SRGAP3O43295 1099 aa11.83□□□□□ -0.52
VRK3-224ENST00000601849 CYP2C8P10632 490 aa11.83□□□□□ -0.52
VRK3-224ENST00000601849 CCL5P13501 91 aa11.83□□□□□ -0.52
VRK3-224ENST00000601849 MTFR1Q15390 333 aa11.83□□□□□ -0.52
VRK3-224ENST00000601849 PRRT2Q7Z6L0 340 aaPredicted RBP11.83□□□□□ -0.52
VRK3-224ENST00000601849 ARHGAP45Q92619 1136 aa11.83□□□□□ -0.52
VRK3-224ENST00000601849 COA7Q96BR5 231 aa11.83□□□□□ -0.52
VRK3-224ENST00000601849 CDCA7LQ96GN5 454 aa11.83□□□□□ -0.52
VRK3-224ENST00000601849 AFG3L2Q9Y4W6 797 aa11.83□□□□□ -0.52
VRK3-224ENST00000601849 GAKO14976 1311 aa11.83□□□□□ -0.52
VRK3-224ENST00000601849 KIAA0100Q14667 2235 aaKnown RBP11.82□□□□□ -0.52
VRK3-224ENST00000601849 A0A1B0GUL7 405 aa11.82□□□□□ -0.52
VRK3-224ENST00000601849 ADCY3O60266 1144 aa11.82□□□□□ -0.52
VRK3-224ENST00000601849 TBC1D12O60347 775 aa11.82□□□□□ -0.52
VRK3-224ENST00000601849 TFRCP02786 760 aaKnown RBP11.82□□□□□ -0.52
VRK3-224ENST00000601849 BCRP11274 1271 aa11.82□□□□□ -0.52
VRK3-224ENST00000601849 BTDP43251 543 aa11.82□□□□□ -0.52
VRK3-224ENST00000601849 MAP3K10Q02779 954 aa11.82□□□□□ -0.52
VRK3-224ENST00000601849 PRKCZQ05513 592 aa11.82□□□□□ -0.52
VRK3-224ENST00000601849 G3BP1Q13283 466 aaKnown RBP eCLIP11.82□□□□□ -0.52
VRK3-224ENST00000601849 GPAT2Q6NUI2 795 aa11.82□□□□□ -0.52
VRK3-224ENST00000601849 ZFPM1Q8IX07 1006 aa11.82□□□□□ -0.52
VRK3-224ENST00000601849 PXYLP1Q8TE99 480 aa11.82□□□□□ -0.52
VRK3-224ENST00000601849 XAGE2Q96GT9 111 aa11.82□□□□□ -0.52
VRK3-224ENST00000601849 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.82□□□□□ -0.52
VRK3-224ENST00000601849 PA2G4Q9UQ80 394 aaKnown RBP11.82□□□□□ -0.52
VRK3-224ENST00000601849 MROH7-TTC4A0A0A0MT08 1334 aa11.82□□□□□ -0.52
VRK3-224ENST00000601849 MYH13Q9UKX3 1938 aa11.82□□□□□ -0.52
VRK3-224ENST00000601849 GPR75-ASB3A0A0A6YYF3 556 aa11.81□□□□□ -0.52
VRK3-224ENST00000601849 TRIM75PA6NK02 468 aa11.81□□□□□ -0.52
VRK3-224ENST00000601849 NPM3O75607 178 aaKnown RBP11.81□□□□□ -0.52
VRK3-224ENST00000601849 SGPL1O95470 568 aa11.81□□□□□ -0.52
VRK3-224ENST00000601849 BAG3O95817 575 aa11.81□□□□□ -0.52
VRK3-224ENST00000601849 FXR1P51114 621 aaKnown RBP eCLIP11.81□□□□□ -0.52
VRK3-224ENST00000601849 TFCP2Q12800 502 aa11.81□□□□□ -0.52
VRK3-224ENST00000601849 MOGSQ13724 837 aa11.81□□□□□ -0.52
VRK3-224ENST00000601849 RASGRF1Q13972 1273 aa11.81□□□□□ -0.52
VRK3-224ENST00000601849 TRMT2AQ8IZ69 625 aaKnown RBP11.81□□□□□ -0.52
VRK3-224ENST00000601849 OSBPL5Q9H0X9 879 aaPredicted RBP11.81□□□□□ -0.52
VRK3-224ENST00000601849 AS3MTQ9HBK9 375 aa11.81□□□□□ -0.52
VRK3-224ENST00000601849 RAI14Q9P0K7 980 aa11.81□□□□□ -0.52
VRK3-224ENST00000601849 LRP2BPQ9P2M1 347 aa11.81□□□□□ -0.52
VRK3-224ENST00000601849 AGTPBP1Q9UPW5 1226 aa11.81□□□□□ -0.52
VRK3-224ENST00000601849 DDTLA6NHG4 134 aaPredicted RBP11.8□□□□□ -0.52
VRK3-224ENST00000601849 GNAI2P04899 355 aa11.8□□□□□ -0.52
VRK3-224ENST00000601849 UQCRFS1P1P0C7P4 283 aa11.8□□□□□ -0.52
VRK3-224ENST00000601849 CTGFP29279 349 aa11.8□□□□□ -0.52
VRK3-224ENST00000601849 ADORA1P30542 326 aa11.8□□□□□ -0.52
VRK3-224ENST00000601849 GCLCP48506 637 aaPredicted RBP11.8□□□□□ -0.52
VRK3-224ENST00000601849 FLT3LGP49771 235 aa11.8□□□□□ -0.52
VRK3-224ENST00000601849 MECOMQ03112 1051 aa11.8□□□□□ -0.52
VRK3-224ENST00000601849 IRF5Q13568 498 aa11.8□□□□□ -0.52
VRK3-224ENST00000601849 SPATA5Q8NB90 893 aa11.8□□□□□ -0.52
VRK3-224ENST00000601849 PROCA1Q8NCQ7 364 aaPredicted RBP11.8□□□□□ -0.52
VRK3-224ENST00000601849 U2AF1L4Q8WU68 220 aaKnown RBP11.8□□□□□ -0.52
VRK3-224ENST00000601849 MEIS3Q99687 375 aa11.8□□□□□ -0.52
VRK3-224ENST00000601849 TRIM34Q9BYJ4 488 aa11.8□□□□□ -0.52
VRK3-224ENST00000601849 TAOK2Q9UL54 1235 aa11.8□□□□□ -0.52
VRK3-224ENST00000601849 ADGRA2Q96PE1 1338 aa11.8□□□□□ -0.52
VRK3-224ENST00000601849 EVI5O60447 810 aa11.79□□□□□ -0.52
VRK3-224ENST00000601849 PLCG2P16885 1265 aa11.79□□□□□ -0.52
VRK3-224ENST00000601849 CHRDL2Q6WN34 429 aa11.79□□□□□ -0.52
VRK3-224ENST00000601849 SH3BP5LQ7L8J4 393 aa11.79□□□□□ -0.52
VRK3-224ENST00000601849 ZNF280CQ8ND82 737 aa11.79□□□□□ -0.52
VRK3-224ENST00000601849 DHX36Q9H2U1 1008 aaKnown RBP11.79□□□□□ -0.52
VRK3-224ENST00000601849 HERC5Q9UII4 1024 aaKnown RBP11.79□□□□□ -0.52
VRK3-224ENST00000601849 GABRQQ9UN88 632 aa11.79□□□□□ -0.52
VRK3-224ENST00000601849 USP17L5A8MUK1 530 aa11.78□□□□□ -0.52
VRK3-224ENST00000601849 IGSF3O75054 1194 aa11.78□□□□□ -0.52
VRK3-224ENST00000601849 FARP2O94887 1054 aaPredicted RBP11.78□□□□□ -0.52
VRK3-224ENST00000601849 RARSP54136 660 aaKnown RBP11.78□□□□□ -0.52
VRK3-224ENST00000601849 SPP2Q13103 211 aa11.78□□□□□ -0.52
VRK3-224ENST00000601849 MTX1Q13505 466 aa11.78□□□□□ -0.52
VRK3-224ENST00000601849 CCDC158Q5M9N0 1113 aa11.78□□□□□ -0.52
VRK3-224ENST00000601849 TEX11Q8IYF3 940 aa11.78□□□□□ -0.52
VRK3-224ENST00000601849 ANKRD13CQ8N6S4 541 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms