RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 KIAA0825Q8IV33 1275 aa13.78□□□□□ -0.2
VRK3-223ENST00000601341 TEKT1Q969V4 418 aa13.78□□□□□ -0.2
VRK3-223ENST00000601341 TRIM44Q96DX7 344 aaPredicted RBP13.78□□□□□ -0.2
VRK3-223ENST00000601341 DAGLAQ9Y4D2 1042 aa13.78□□□□□ -0.2
VRK3-223ENST00000601341 ATP6V1DQ9Y5K8 247 aa13.78□□□□□ -0.2
VRK3-223ENST00000601341 E7EWF7 191 aa13.77□□□□□ -0.21
VRK3-223ENST00000601341 RAD17O75943 681 aa13.77□□□□□ -0.21
VRK3-223ENST00000601341 VIL1P09327 827 aaKnown RBP13.77□□□□□ -0.21
VRK3-223ENST00000601341 CAVIN1Q6NZI2 390 aaKnown RBP13.77□□□□□ -0.21
VRK3-223ENST00000601341 RSBN1LQ6PCB5 846 aaPredicted RBP13.77□□□□□ -0.21
VRK3-223ENST00000601341 PSMD14O00487 310 aa13.76□□□□□ -0.21
VRK3-223ENST00000601341 SCNN1DP51172 638 aa13.76□□□□□ -0.21
VRK3-223ENST00000601341 STOX1Q6ZVD7 989 aa13.76□□□□□ -0.21
VRK3-223ENST00000601341 GPT2Q8TD30 523 aa13.76□□□□□ -0.21
VRK3-223ENST00000601341 SH3RF3Q8TEJ3 882 aaPredicted RBP13.76□□□□□ -0.21
VRK3-223ENST00000601341 ALDH8A1Q9H2A2 487 aaPredicted RBP13.76□□□□□ -0.21
VRK3-223ENST00000601341 DCP1AQ9NPI6 582 aaPredicted RBP13.76□□□□□ -0.21
VRK3-223ENST00000601341 RRAGDQ9NQL2 400 aaPredicted RBP13.76□□□□□ -0.21
VRK3-223ENST00000601341 PDRG1Q9NUG6 133 aa13.76□□□□□ -0.21
VRK3-223ENST00000601341 FER1L6Q2WGJ9 1857 aa13.76□□□□□ -0.21
VRK3-223ENST00000601341 RPS6KB1P23443 525 aa13.76□□□□□ -0.21
VRK3-223ENST00000601341 USP5P45974 858 aa13.76□□□□□ -0.21
VRK3-223ENST00000601341 CRKP46108 304 aa13.76□□□□□ -0.21
VRK3-223ENST00000601341 TRDNQ13061 729 aa13.76□□□□□ -0.21
VRK3-223ENST00000601341 TEX11Q8IYF3 940 aa13.76□□□□□ -0.21
VRK3-223ENST00000601341 SERPINA10Q9UK55 444 aa13.76□□□□□ -0.21
VRK3-223ENST00000601341 COL4A5P29400 1685 aa13.75□□□□□ -0.21
VRK3-223ENST00000601341 SCN9AQ15858 1988 aa13.75□□□□□ -0.21
VRK3-223ENST00000601341 ESPNB1AK53 854 aa13.75□□□□□ -0.21
VRK3-223ENST00000601341 CPA1P15085 419 aa13.75□□□□□ -0.21
VRK3-223ENST00000601341 RHBDL3P58872 404 aa13.75□□□□□ -0.21
VRK3-223ENST00000601341 RASSF7Q02833 373 aa13.75□□□□□ -0.21
VRK3-223ENST00000601341 CXCL9Q07325 125 aa13.75□□□□□ -0.21
VRK3-223ENST00000601341 TNIP1Q15025 636 aa13.75□□□□□ -0.21
VRK3-223ENST00000601341 CIAPIN1Q6FI81 312 aa13.75□□□□□ -0.21
VRK3-223ENST00000601341 LRSAM1Q6UWE0 723 aa13.75□□□□□ -0.21
VRK3-223ENST00000601341 ARHGAP27Q6ZUM4 889 aa13.75□□□□□ -0.21
VRK3-223ENST00000601341 AGBL3Q8NEM8 1001 aa13.75□□□□□ -0.21
VRK3-223ENST00000601341 NCOA7Q8NI08 942 aa13.75□□□□□ -0.21
VRK3-223ENST00000601341 ZDHHC15Q96MV8 337 aa13.75□□□□□ -0.21
VRK3-223ENST00000601341 ARPP21Q9UBL0 812 aaPredicted RBP13.75□□□□□ -0.21
VRK3-223ENST00000601341 MINDY4BA8MYZ0 360 aa13.74□□□□□ -0.21
VRK3-223ENST00000601341 USP17L12C9JPN9 530 aa13.74□□□□□ -0.21
VRK3-223ENST00000601341 USP17L21D6R901 530 aa13.74□□□□□ -0.21
VRK3-223ENST00000601341 NCLP19338 710 aaKnown RBP13.74□□□□□ -0.21
VRK3-223ENST00000601341 PPARAQ07869 468 aa13.74□□□□□ -0.21
VRK3-223ENST00000601341 ANKRD1Q15327 319 aa13.74□□□□□ -0.21
VRK3-223ENST00000601341 DHX32Q7L7V1 743 aaKnown RBP13.74□□□□□ -0.21
VRK3-223ENST00000601341 RALYLQ86SE5 291 aaKnown RBP13.74□□□□□ -0.21
VRK3-223ENST00000601341 TBC1D10CQ8IV04 446 aa13.74□□□□□ -0.21
VRK3-223ENST00000601341 OGFOD1Q8N543 542 aa13.74□□□□□ -0.21
VRK3-223ENST00000601341 TGFBRAP1Q8WUH2 860 aa13.74□□□□□ -0.21
VRK3-223ENST00000601341 GMLQ99445 158 aa13.74□□□□□ -0.21
VRK3-223ENST00000601341 NBPF3Q9H094 633 aa13.74□□□□□ -0.21
VRK3-223ENST00000601341 RNF41Q9H4P4 317 aaPredicted RBP13.74□□□□□ -0.21
VRK3-223ENST00000601341 MKRN1Q9UHC7 482 aaKnown RBP13.74□□□□□ -0.21
VRK3-223ENST00000601341 ANAPC4Q9UJX5 808 aa13.74□□□□□ -0.21
VRK3-223ENST00000601341 HDAC9Q9UKV0 1011 aa13.74□□□□□ -0.21
VRK3-223ENST00000601341 ARFGEF1Q9Y6D6 1849 aa13.74□□□□□ -0.21
VRK3-223ENST00000601341 RBM5P52756 815 aaKnown RBP eCLIP13.73□□□□□ -0.21
VRK3-223ENST00000601341 AK2P54819 239 aa13.73□□□□□ -0.21
VRK3-223ENST00000601341 CSPP1Q1MSJ5 1256 aa13.73□□□□□ -0.21
VRK3-223ENST00000601341 SBK1Q52WX2 424 aa13.73□□□□□ -0.21
VRK3-223ENST00000601341 AKNAD1Q5T1N1 836 aa13.73□□□□□ -0.21
VRK3-223ENST00000601341 APOBEC3HQ6NTF7 200 aaKnown RBP13.73□□□□□ -0.21
VRK3-223ENST00000601341 CTR9Q6PD62 1173 aa13.73□□□□□ -0.21
VRK3-223ENST00000601341 AMOTL1Q8IY63 956 aa13.73□□□□□ -0.21
VRK3-223ENST00000601341 CNNM2Q9H8M5 875 aa13.73□□□□□ -0.21
VRK3-223ENST00000601341 MCM9Q9NXL9 1143 aa13.73□□□□□ -0.21
VRK3-223ENST00000601341 LMNB1P20700 586 aa13.73□□□□□ -0.21
VRK3-223ENST00000601341 EIF6P56537 245 aaKnown RBP13.73□□□□□ -0.21
VRK3-223ENST00000601341 CTDSPL2Q05D32 466 aa13.73□□□□□ -0.21
VRK3-223ENST00000601341 MFSD6Q6ZSS7 791 aa13.73□□□□□ -0.21
VRK3-223ENST00000601341 PDLIM2Q96JY6 352 aa13.73□□□□□ -0.21
VRK3-223ENST00000601341 USP40Q9NVE5 1235 aa13.73□□□□□ -0.21
VRK3-223ENST00000601341 MYH2Q9UKX2 1941 aa13.73□□□□□ -0.21
VRK3-223ENST00000601341 FZD9O00144 591 aa13.72□□□□□ -0.21
VRK3-223ENST00000601341 LETM1O95202 739 aaPredicted RBP13.72□□□□□ -0.21
VRK3-223ENST00000601341 SLC3A2P08195 630 aaKnown RBP13.72□□□□□ -0.21
VRK3-223ENST00000601341 ZSCAN22P10073 491 aaPredicted RBP13.72□□□□□ -0.21
VRK3-223ENST00000601341 PCP11498 1178 aaKnown RBP13.72□□□□□ -0.21
VRK3-223ENST00000601341 MCM5P33992 734 aa13.72□□□□□ -0.21
VRK3-223ENST00000601341 MMP14P50281 582 aa13.72□□□□□ -0.21
VRK3-223ENST00000601341 PRELPP51888 382 aa13.72□□□□□ -0.21
VRK3-223ENST00000601341 COL9A3Q14050 684 aaPredicted RBP13.72□□□□□ -0.21
VRK3-223ENST00000601341 CDC42EP5Q6NZY7 148 aa13.72□□□□□ -0.21
VRK3-223ENST00000601341 MAPKAPK5Q8IW41 473 aa13.72□□□□□ -0.21
VRK3-223ENST00000601341 STAG1Q8WVM7 1258 aa13.72□□□□□ -0.21
VRK3-223ENST00000601341 KRT23Q9C075 422 aa13.72□□□□□ -0.21
VRK3-223ENST00000601341 ZBTB12Q9Y330 459 aaPredicted RBP13.72□□□□□ -0.21
VRK3-223ENST00000601341 SRCAPQ6ZRS2 3230 aa13.71□□□□□ -0.21
VRK3-223ENST00000601341 STX6O43752 255 aa13.71□□□□□ -0.21
VRK3-223ENST00000601341 USP17L8P0C7I0 530 aa13.71□□□□□ -0.21
VRK3-223ENST00000601341 RPS12P25398 132 aaKnown RBP13.71□□□□□ -0.21
VRK3-223ENST00000601341 FGD1P98174 961 aa13.71□□□□□ -0.21
VRK3-223ENST00000601341 EXOSC10Q01780 885 aaKnown RBP13.71□□□□□ -0.21
VRK3-223ENST00000601341 MB21D2Q8IYB1 491 aaPredicted RBP13.71□□□□□ -0.21
VRK3-223ENST00000601341 TMEM63CQ9P1W3 806 aa13.71□□□□□ -0.21
VRK3-223ENST00000601341 SMC3Q9UQE7 1217 aa13.71□□□□□ -0.21
VRK3-223ENST00000601341 FLT1P17948 1338 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms