RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 NFIAQ12857 509 aa10.74□□□□□ -0.69
TRIM28-214ENST00000600840 CDC42EP5Q6NZY7 148 aa10.74□□□□□ -0.69
TRIM28-214ENST00000600840 HHIPL2Q6UWX4 724 aa10.74□□□□□ -0.69
TRIM28-214ENST00000600840 MIGA2Q7L4E1 593 aa10.74□□□□□ -0.69
TRIM28-214ENST00000600840 ZFPM1Q8IX07 1006 aa10.74□□□□□ -0.69
TRIM28-214ENST00000600840 FAM43AQ8N2R8 423 aa10.74□□□□□ -0.69
TRIM28-214ENST00000600840 ZKSCAN4Q969J2 545 aaPredicted RBP10.74□□□□□ -0.69
TRIM28-214ENST00000600840 SNCAIPQ9Y6H5 919 aa10.74□□□□□ -0.69
TRIM28-214ENST00000600840 SALL3Q9BXA9 1300 aa10.74□□□□□ -0.69
TRIM28-214ENST00000600840 AK9Q5TCS8 1911 aa10.74□□□□□ -0.69
TRIM28-214ENST00000600840 SMARCA5O60264 1052 aaPredicted RBP10.73□□□□□ -0.69
TRIM28-214ENST00000600840 TNNI2P48788 182 aa10.73□□□□□ -0.69
TRIM28-214ENST00000600840 MNX1P50219 401 aaPredicted RBP10.73□□□□□ -0.69
TRIM28-214ENST00000600840 NUCB1Q02818 461 aa10.73□□□□□ -0.69
TRIM28-214ENST00000600840 TCP10Q12799 353 aa10.73□□□□□ -0.69
TRIM28-214ENST00000600840 TNNI3KQ59H18 835 aa10.73□□□□□ -0.69
TRIM28-214ENST00000600840 CCDC102BQ68D86 513 aa10.73□□□□□ -0.69
TRIM28-214ENST00000600840 B4GALNT3Q6L9W6 998 aa10.73□□□□□ -0.69
TRIM28-214ENST00000600840 ERC1Q8IUD2 1116 aa10.73□□□□□ -0.69
TRIM28-214ENST00000600840 WDR66Q8TBY9 1149 aa10.73□□□□□ -0.69
TRIM28-214ENST00000600840 KIF1BPQ96EK5 621 aa10.73□□□□□ -0.69
TRIM28-214ENST00000600840 ZFYVE28Q9HCC9 887 aa10.73□□□□□ -0.69
TRIM28-214ENST00000600840 FAM198AQ9UFP1 575 aa10.73□□□□□ -0.69
TRIM28-214ENST00000600840 SUGT1Q9Y2Z0 365 aa10.73□□□□□ -0.69
TRIM28-214ENST00000600840 FPGT-TNNI3KV9GXZ4 949 aa10.73□□□□□ -0.69
TRIM28-214ENST00000600840 ALPK3Q96L96 1907 aa10.72□□□□□ -0.69
TRIM28-214ENST00000600840 CCL15-CCL14A0A0B4J2E2 113 aa10.72□□□□□ -0.69
TRIM28-214ENST00000600840 A0A1B0GUL7 405 aa10.72□□□□□ -0.69
TRIM28-214ENST00000600840 CTGFP29279 349 aa10.72□□□□□ -0.69
TRIM28-214ENST00000600840 INPP5BP32019 993 aa10.72□□□□□ -0.69
TRIM28-214ENST00000600840 RASGRF1Q13972 1273 aa10.72□□□□□ -0.69
TRIM28-214ENST00000600840 CCL15Q16663 113 aa10.72□□□□□ -0.69
TRIM28-214ENST00000600840 FAM83AQ86UY5 434 aa10.72□□□□□ -0.69
TRIM28-214ENST00000600840 ZNF384Q8TF68 577 aa10.72□□□□□ -0.69
TRIM28-214ENST00000600840 LRRCC1Q9C099 1032 aa10.72□□□□□ -0.69
TRIM28-214ENST00000600840 IL1RAPL2Q9NP60 686 aa10.72□□□□□ -0.69
TRIM28-214ENST00000600840 SPDYE5A6NIY4 337 aa10.71□□□□□ -0.69
TRIM28-214ENST00000600840 MAST3O60307 1309 aa10.71□□□□□ -0.69
TRIM28-214ENST00000600840 LDHBP07195 334 aaKnown RBP10.71□□□□□ -0.69
TRIM28-214ENST00000600840 PDE4AP27815 886 aa10.71□□□□□ -0.69
TRIM28-214ENST00000600840 LACTBP83111 547 aaPredicted RBP10.71□□□□□ -0.69
TRIM28-214ENST00000600840 FKBP1CQ5VVH2 108 aa10.71□□□□□ -0.69
TRIM28-214ENST00000600840 PI16Q6UXB8 463 aa10.71□□□□□ -0.69
TRIM28-214ENST00000600840 CENPQQ7L2Z9 268 aaPredicted RBP10.71□□□□□ -0.69
TRIM28-214ENST00000600840 UBE2Q1Q7Z7E8 422 aa10.71□□□□□ -0.69
TRIM28-214ENST00000600840 XAGE2Q96GT9 111 aa10.71□□□□□ -0.69
TRIM28-214ENST00000600840 WRNIP1Q96S55 665 aa10.71□□□□□ -0.69
TRIM28-214ENST00000600840 SALL1Q9NSC2 1324 aa10.71□□□□□ -0.69
TRIM28-214ENST00000600840 USP40Q9NVE5 1235 aa10.71□□□□□ -0.69
TRIM28-214ENST00000600840 TLR7Q9NYK1 1049 aaKnown RBP10.71□□□□□ -0.69
TRIM28-214ENST00000600840 DBNLQ9UJU6 430 aaKnown RBP10.71□□□□□ -0.69
TRIM28-214ENST00000600840 DENND2AQ9ULE3 1009 aa10.71□□□□□ -0.69
TRIM28-214ENST00000600840 APBB1O00213 710 aa10.7□□□□□ -0.7
TRIM28-214ENST00000600840 IRF6O14896 467 aa10.7□□□□□ -0.7
TRIM28-214ENST00000600840 ARHGEF6Q15052 776 aa10.7□□□□□ -0.7
TRIM28-214ENST00000600840 ANKRD45Q5TZF3 282 aa10.7□□□□□ -0.7
TRIM28-214ENST00000600840 Q7L0L9 218 aa10.7□□□□□ -0.7
TRIM28-214ENST00000600840 SH3BP5LQ7L8J4 393 aa10.7□□□□□ -0.7
TRIM28-214ENST00000600840 CHD1LQ86WJ1 897 aa10.7□□□□□ -0.7
TRIM28-214ENST00000600840 OTUD7AQ8TE49 926 aaPredicted RBP10.7□□□□□ -0.7
TRIM28-214ENST00000600840 FAM151AQ8WW52 585 aa10.7□□□□□ -0.7
TRIM28-214ENST00000600840 CCDC136Q96JN2 1154 aa10.7□□□□□ -0.7
TRIM28-214ENST00000600840 DBNDD2Q9BQY9 259 aa10.7□□□□□ -0.7
TRIM28-214ENST00000600840 HTATIP2Q9BUP3 242 aa10.7□□□□□ -0.7
TRIM28-214ENST00000600840 COL25A1Q9BXS0 654 aaPredicted RBP10.7□□□□□ -0.7
TRIM28-214ENST00000600840 CCDC8Q9H0W5 538 aaPredicted RBP10.7□□□□□ -0.7
TRIM28-214ENST00000600840 TMOD2Q9NZR1 351 aa10.7□□□□□ -0.7
TRIM28-214ENST00000600840 STAP2Q9UGK3 403 aa10.7□□□□□ -0.7
TRIM28-214ENST00000600840 AKAP2Q9Y2D5 859 aa10.7□□□□□ -0.7
TRIM28-214ENST00000600840 CSADQ9Y600 493 aa10.7□□□□□ -0.7
TRIM28-214ENST00000600840 RPAP1Q9BWH6 1393 aaPredicted RBP10.69□□□□□ -0.7
TRIM28-214ENST00000600840 GAKO14976 1311 aa10.69□□□□□ -0.7
TRIM28-214ENST00000600840 BTBD19C9JJ37 291 aa10.69□□□□□ -0.7
TRIM28-214ENST00000600840 GTF2A2P52657 109 aa10.69□□□□□ -0.7
TRIM28-214ENST00000600840 TBC1D9Q6ZT07 1266 aa10.69□□□□□ -0.7
TRIM28-214ENST00000600840 ERO1BQ86YB8 467 aa10.69□□□□□ -0.7
TRIM28-214ENST00000600840 CLASRPQ8N2M8 674 aaKnown RBP10.69□□□□□ -0.7
TRIM28-214ENST00000600840 ZNF512BQ96KM6 892 aaPredicted RBP10.69□□□□□ -0.7
TRIM28-214ENST00000600840 DDX4Q9NQI0 724 aaKnown RBP10.69□□□□□ -0.7
TRIM28-214ENST00000600840 GNL3LQ9NVN8 582 aaKnown RBP10.69□□□□□ -0.7
TRIM28-214ENST00000600840 ZNF112Q9UJU3 913 aa10.69□□□□□ -0.7
TRIM28-214ENST00000600840 MYO5AQ9Y4I1 1855 aaKnown RBP10.69□□□□□ -0.7
TRIM28-214ENST00000600840 RFX7Q2KHR2 1363 aa10.68□□□□□ -0.7
TRIM28-214ENST00000600840 ATRNL1Q5VV63 1379 aa10.68□□□□□ -0.7
TRIM28-214ENST00000600840 DOCK2Q92608 1830 aa10.68□□□□□ -0.7
TRIM28-214ENST00000600840 DDTLA6NHG4 134 aaPredicted RBP10.68□□□□□ -0.7
TRIM28-214ENST00000600840 SEMA3EO15041 775 aa10.68□□□□□ -0.7
TRIM28-214ENST00000600840 TLR2O60603 784 aa10.68□□□□□ -0.7
TRIM28-214ENST00000600840 CCL5P13501 91 aa10.68□□□□□ -0.7
TRIM28-214ENST00000600840 GJA8P48165 433 aa10.68□□□□□ -0.7
TRIM28-214ENST00000600840 RGS3P49796 1198 aa10.68□□□□□ -0.7
TRIM28-214ENST00000600840 OS9Q13438 667 aaPredicted RBP10.68□□□□□ -0.7
TRIM28-214ENST00000600840 MOGSQ13724 837 aa10.68□□□□□ -0.7
TRIM28-214ENST00000600840 KIF22Q14807 665 aa10.68□□□□□ -0.7
TRIM28-214ENST00000600840 AACSQ86V21 672 aa10.68□□□□□ -0.7
TRIM28-214ENST00000600840 PLEKHM2Q8IWE5 1019 aa10.68□□□□□ -0.7
TRIM28-214ENST00000600840 NEUROD6Q96NK8 337 aa10.68□□□□□ -0.7
TRIM28-214ENST00000600840 ZNF341Q9BYN7 854 aa10.68□□□□□ -0.7
TRIM28-214ENST00000600840 OSBPL3Q9H4L5 887 aa10.68□□□□□ -0.7
TRIM28-214ENST00000600840 HMG20BQ9P0W2 317 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 126.2 ms