RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 CCP110O43303 1012 aa21.06■□□□□ 0.96
UPF1-210ENST00000600689 CBFA2T2O43439 604 aa21.06■□□□□ 0.96
UPF1-210ENST00000600689 FOXO4P98177 505 aa21.06■□□□□ 0.96
UPF1-210ENST00000600689 SENP2Q9HC62 589 aa21.06■□□□□ 0.96
UPF1-210ENST00000600689 INCENPQ9NQS7 918 aa21.06■□□□□ 0.96
UPF1-210ENST00000600689 ADORA1P30542 326 aa21.05■□□□□ 0.96
UPF1-210ENST00000600689 CCDC158Q5M9N0 1113 aa21.05■□□□□ 0.96
UPF1-210ENST00000600689 VPS18Q9P253 973 aa21.05■□□□□ 0.96
UPF1-210ENST00000600689 H3BQF6 201 aa21.05■□□□□ 0.96
UPF1-210ENST00000600689 BPIFA3Q9BQP9 254 aa21.05■□□□□ 0.96
UPF1-210ENST00000600689 GPS2Q13227 327 aa21.04■□□□□ 0.96
UPF1-210ENST00000600689 METTL16Q86W50 562 aaKnown RBP21.04■□□□□ 0.96
UPF1-210ENST00000600689 KCPQ6ZWJ8 1503 aa21.04■□□□□ 0.96
UPF1-210ENST00000600689 LAMB4A4D0S4 1761 aa21.04■□□□□ 0.96
UPF1-210ENST00000600689 RHOXF2BP0C7M4 288 aa21.04■□□□□ 0.96
UPF1-210ENST00000600689 STX17P56962 302 aa21.04■□□□□ 0.96
UPF1-210ENST00000600689 RHOXF2Q9BQY4 288 aa21.04■□□□□ 0.96
UPF1-210ENST00000600689 AGXT2Q9BYV1 514 aa21.04■□□□□ 0.96
UPF1-210ENST00000600689 NFE2L3Q9Y4A8 694 aa21.04■□□□□ 0.96
UPF1-210ENST00000600689 KRT40Q6A162 431 aa21.03■□□□□ 0.96
UPF1-210ENST00000600689 TXLNBQ8N3L3 684 aa21.03■□□□□ 0.96
UPF1-210ENST00000600689 PALLDQ8WX93 1383 aa21.03■□□□□ 0.96
UPF1-210ENST00000600689 SOWAHDA6NJG2 315 aa21.03■□□□□ 0.96
UPF1-210ENST00000600689 ARHGAP6O43182 974 aa21.03■□□□□ 0.96
UPF1-210ENST00000600689 DHX16O60231 1041 aaKnown RBP21.03■□□□□ 0.96
UPF1-210ENST00000600689 ANTXR2P58335 489 aa21.03■□□□□ 0.96
UPF1-210ENST00000600689 GRIN1Q05586 938 aa21.03■□□□□ 0.96
UPF1-210ENST00000600689 SLC39A14Q15043 492 aa21.03■□□□□ 0.96
UPF1-210ENST00000600689 NKX1-1Q15270 411 aaPredicted RBP21.03■□□□□ 0.96
UPF1-210ENST00000600689 NFXL1Q6ZNB6 911 aa21.03■□□□□ 0.96
UPF1-210ENST00000600689 PUS7LQ9H0K6 701 aaKnown RBP21.03■□□□□ 0.96
UPF1-210ENST00000600689 MRPL44Q9H9J2 332 aaKnown RBP21.03■□□□□ 0.96
UPF1-210ENST00000600689 PLEKHG2Q9H7P9 1386 aa21.03■□□□□ 0.96
UPF1-210ENST00000600689 H7C1W4 665 aa21.03■□□□□ 0.96
UPF1-210ENST00000600689 TULP2O00295 520 aa21.03■□□□□ 0.96
UPF1-210ENST00000600689 BMP6P22004 513 aa21.03■□□□□ 0.96
UPF1-210ENST00000600689 FMR1Q06787 632 aaKnown RBP eCLIP21.03■□□□□ 0.964e-6■■■■□ 20.8
UPF1-210ENST00000600689 LONRF2Q1L5Z9 754 aa21.03■□□□□ 0.96
UPF1-210ENST00000600689 ATG9AQ7Z3C6 839 aa21.03■□□□□ 0.96
UPF1-210ENST00000600689 PDE11AQ9HCR9 933 aa21.03■□□□□ 0.96
UPF1-210ENST00000600689 SAMSN1Q9NSI8 373 aaKnown RBP21.03■□□□□ 0.96
UPF1-210ENST00000600689 CWC25Q9NXE8 425 aaPredicted RBP21.03■□□□□ 0.96
UPF1-210ENST00000600689 ASAP1Q9ULH1 1129 aa21.03■□□□□ 0.96
UPF1-210ENST00000600689 IKBKBO14920 756 aa21.02■□□□□ 0.96
UPF1-210ENST00000600689 N4BP1O75113 896 aaKnown RBP21.02■□□□□ 0.96
UPF1-210ENST00000600689 SCARF1Q14162 830 aa21.02■□□□□ 0.96
UPF1-210ENST00000600689 PLEKHA4Q9H4M7 779 aa21.02■□□□□ 0.96
UPF1-210ENST00000600689 ADAM21Q9UKJ8 722 aa21.02■□□□□ 0.96
UPF1-210ENST00000600689 PRR29P0C7W0 189 aa21.02■□□□□ 0.96
UPF1-210ENST00000600689 TTC39AQ5SRH9 613 aa21.02■□□□□ 0.96
UPF1-210ENST00000600689 BRAPQ7Z569 592 aa21.02■□□□□ 0.96
UPF1-210ENST00000600689 SRRTQ9BXP5 876 aaKnown RBP21.02■□□□□ 0.96
UPF1-210ENST00000600689 RSPH14Q9UHP6 348 aa21.02■□□□□ 0.96
UPF1-210ENST00000600689 SHANK3Q9BYB0 1731 aa21.01■□□□□ 0.95
UPF1-210ENST00000600689 ZNF213O14771 459 aa21.01■□□□□ 0.95
UPF1-210ENST00000600689 CCDC102BQ68D86 513 aa21.01■□□□□ 0.95
UPF1-210ENST00000600689 CMTR1Q8N1G2 835 aaKnown RBP21.01■□□□□ 0.95
UPF1-210ENST00000600689 KCNH3Q9ULD8 1083 aa21.01■□□□□ 0.95
UPF1-210ENST00000600689 TMEM139Q8IV31 216 aa21.01■□□□□ 0.95
UPF1-210ENST00000600689 BTG4Q9NY30 223 aa21.01■□□□□ 0.95
UPF1-210ENST00000600689 CASP1P29466 404 aa21.01■□□□□ 0.95
UPF1-210ENST00000600689 METAP2P50579 478 aaKnown RBP eCLIP21.01■□□□□ 0.954e-7■■■□□ 17.8
UPF1-210ENST00000600689 GPR161Q8N6U8 529 aaKnown RBP21.01■□□□□ 0.95
UPF1-210ENST00000600689 ABCA3Q99758 1704 aa21.01■□□□□ 0.95
UPF1-210ENST00000600689 FUT8Q9BYC5 575 aa21.01■□□□□ 0.95
UPF1-210ENST00000600689 KAT6BQ8WYB5 2073 aa21■□□□□ 0.95
UPF1-210ENST00000600689 UBR2Q8IWV8 1755 aa21■□□□□ 0.95
UPF1-210ENST00000600689 MAP3K9P80192 1104 aa21■□□□□ 0.95
UPF1-210ENST00000600689 TMOD3Q9NYL9 352 aa21■□□□□ 0.95
UPF1-210ENST00000600689 MRFAP1Q9Y605 127 aa21■□□□□ 0.95
UPF1-210ENST00000600689 NCOA7Q8NI08 942 aa21■□□□□ 0.95
UPF1-210ENST00000600689 GOLGA1Q92805 767 aa21■□□□□ 0.95
UPF1-210ENST00000600689 MPHOSPH8Q99549 860 aa21■□□□□ 0.95
UPF1-210ENST00000600689 ZAP70P43403 619 aa20.99■□□□□ 0.95
UPF1-210ENST00000600689 TC2NQ8N9U0 490 aa20.99■□□□□ 0.95
UPF1-210ENST00000600689 POLR2DO15514 142 aaKnown RBP20.99■□□□□ 0.95
UPF1-210ENST00000600689 TOMM22Q9NS69 142 aa20.99■□□□□ 0.95
UPF1-210ENST00000600689 KCNJ14Q9UNX9 436 aa20.99■□□□□ 0.95
UPF1-210ENST00000600689 B4E1Z4 1266 aa20.98■□□□□ 0.95
UPF1-210ENST00000600689 TRDNQ13061 729 aa20.98■□□□□ 0.95
UPF1-210ENST00000600689 FOXR1Q6PIV2 292 aa20.98■□□□□ 0.95
UPF1-210ENST00000600689 PIGBQ92521 554 aa20.98■□□□□ 0.95
UPF1-210ENST00000600689 FOXP2O15409 715 aa20.98■□□□□ 0.95
UPF1-210ENST00000600689 TEX33O43247 280 aa20.98■□□□□ 0.95
UPF1-210ENST00000600689 DNAJC10Q8IXB1 793 aa20.98■□□□□ 0.95
UPF1-210ENST00000600689 CCDC102AQ96A19 550 aa20.98■□□□□ 0.95
UPF1-210ENST00000600689 AK7Q96M32 723 aa20.98■□□□□ 0.95
UPF1-210ENST00000600689 SLC26A6Q9BXS9 759 aa20.98■□□□□ 0.95
UPF1-210ENST00000600689 SERTAD1Q9UHV2 236 aa20.98■□□□□ 0.95
UPF1-210ENST00000600689 TUBE1Q9UJT0 475 aa20.98■□□□□ 0.95
UPF1-210ENST00000600689 MYO1CO00159 1063 aa20.98■□□□□ 0.95
UPF1-210ENST00000600689 TPM1P09493 284 aa20.98■□□□□ 0.95
UPF1-210ENST00000600689 CHMP4BP1P59074 171 aa20.98■□□□□ 0.95
UPF1-210ENST00000600689 KIF4BQ2VIQ3 1234 aa20.98■□□□□ 0.95
UPF1-210ENST00000600689 ZNF569Q5MCW4 686 aa20.98■□□□□ 0.95
UPF1-210ENST00000600689 KCNJ6P48051 423 aa20.97■□□□□ 0.95
UPF1-210ENST00000600689 TRIM29Q14134 588 aa20.97■□□□□ 0.95
UPF1-210ENST00000600689 MB21D2Q8IYB1 491 aaPredicted RBP20.97■□□□□ 0.95
UPF1-210ENST00000600689 CEP126Q9P2H0 1117 aa20.97■□□□□ 0.95
UPF1-210ENST00000600689 TOGARAM1Q9Y4F4 1720 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms