RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 AIDAQ96BJ3 306 aa23.29■■□□□ 1.32
UPF1-209ENST00000600310 CRNKL1Q9BZJ0 848 aaKnown RBP23.29■■□□□ 1.32
UPF1-209ENST00000600310 OSBPL5Q9H0X9 879 aaPredicted RBP23.29■■□□□ 1.32
UPF1-209ENST00000600310 MYH7P12883 1935 aa23.28■■□□□ 1.32
UPF1-209ENST00000600310 SH3BP5LQ7L8J4 393 aa23.28■■□□□ 1.32
UPF1-209ENST00000600310 GBA2Q9HCG7 927 aaPredicted RBP23.28■■□□□ 1.32
UPF1-209ENST00000600310 FLT1P17948 1338 aa23.28■■□□□ 1.32
UPF1-209ENST00000600310 USP5P45974 858 aa23.27■■□□□ 1.32
UPF1-209ENST00000600310 FKBP1BP68106 108 aa23.27■■□□□ 1.32
UPF1-209ENST00000600310 HTRA3P83110 453 aa23.27■■□□□ 1.32
UPF1-209ENST00000600310 MAPKAPK5Q8IW41 473 aa23.27■■□□□ 1.32
UPF1-209ENST00000600310 STRBPQ96SI9 672 aaKnown RBP23.27■■□□□ 1.32
UPF1-209ENST00000600310 CREBZFQ9NS37 354 aa23.27■■□□□ 1.32
UPF1-209ENST00000600310 ATRNL1Q5VV63 1379 aa23.27■■□□□ 1.31
UPF1-209ENST00000600310 COL2A1P02458 1487 aaPredicted RBP23.26■■□□□ 1.31
UPF1-209ENST00000600310 M0R2C6 588 aa23.26■■□□□ 1.31
UPF1-209ENST00000600310 GPAA1O43292 621 aa23.26■■□□□ 1.31
UPF1-209ENST00000600310 ZSCAN29Q8IWY8 852 aaPredicted RBP23.26■■□□□ 1.31
UPF1-209ENST00000600310 C2orf69Q8N8R5 385 aa23.26■■□□□ 1.31
UPF1-209ENST00000600310 HOOK2Q96ED9 719 aa23.26■■□□□ 1.31
UPF1-209ENST00000600310 SEC62Q99442 399 aaKnown RBP23.26■■□□□ 1.31
UPF1-209ENST00000600310 HELLSQ9NRZ9 838 aa23.26■■□□□ 1.31
UPF1-209ENST00000600310 MKRN1Q9UHC7 482 aaKnown RBP23.26■■□□□ 1.31
UPF1-209ENST00000600310 SSC5DA1L4H1 1573 aa23.26■■□□□ 1.31
UPF1-209ENST00000600310 DDTLA6NHG4 134 aaPredicted RBP23.25■■□□□ 1.31
UPF1-209ENST00000600310 HIP1O00291 1037 aa23.25■■□□□ 1.31
UPF1-209ENST00000600310 KLRG1Q96E93 195 aa23.25■■□□□ 1.31
UPF1-209ENST00000600310 TRPM7Q96QT4 1865 aa23.24■■□□□ 1.31
UPF1-209ENST00000600310 PRKAB2O43741 272 aa23.24■■□□□ 1.31
UPF1-209ENST00000600310 PPP1R12BO60237 982 aaPredicted RBP23.24■■□□□ 1.31
UPF1-209ENST00000600310 NMIQ13287 307 aaPredicted RBP23.24■■□□□ 1.31
UPF1-209ENST00000600310 BMP2KLQ5H9B9 411 aa23.24■■□□□ 1.31
UPF1-209ENST00000600310 SDR42E1Q8WUS8 393 aa23.24■■□□□ 1.31
UPF1-209ENST00000600310 FAM227BQ96M60 508 aa23.24■■□□□ 1.31
UPF1-209ENST00000600310 DHX36Q9H2U1 1008 aaKnown RBP23.24■■□□□ 1.31
UPF1-209ENST00000600310 ATP8A2Q9NTI2 1148 aa23.24■■□□□ 1.31
UPF1-209ENST00000600310 TLL2Q9Y6L7 1015 aa23.24■■□□□ 1.31
UPF1-209ENST00000600310 SLC4A4Q9Y6R1 1079 aa23.24■■□□□ 1.31
UPF1-209ENST00000600310 A0A0D9SFI3 127 aa23.23■■□□□ 1.31
UPF1-209ENST00000600310 GNAT2P19087 354 aa23.23■■□□□ 1.31
UPF1-209ENST00000600310 MAP3K11Q16584 847 aa23.23■■□□□ 1.31
UPF1-209ENST00000600310 MCMDC2Q4G0Z9 681 aa23.23■■□□□ 1.31
UPF1-209ENST00000600310 ARMC9Q7Z3E5 817 aa23.23■■□□□ 1.31
UPF1-209ENST00000600310 CSRNP1Q96S65 589 aa23.23■■□□□ 1.31
UPF1-209ENST00000600310 DCP1AQ9NPI6 582 aaPredicted RBP23.23■■□□□ 1.31
UPF1-209ENST00000600310 DIAPH3Q9NSV4 1193 aa23.23■■□□□ 1.31
UPF1-209ENST00000600310 USP2O75604 605 aaPredicted RBP23.22■■□□□ 1.31
UPF1-209ENST00000600310 PRKG1Q13976 671 aa23.22■■□□□ 1.31
UPF1-209ENST00000600310 TTLL12Q14166 644 aaPredicted RBP23.22■■□□□ 1.31
UPF1-209ENST00000600310 DCAF15Q66K64 600 aa23.22■■□□□ 1.31
UPF1-209ENST00000600310 SAPCD2Q86UD0 394 aa23.22■■□□□ 1.31
UPF1-209ENST00000600310 PALD1Q9ULE6 856 aa23.22■■□□□ 1.31
UPF1-209ENST00000600310 ABT1Q9ULW3 272 aaKnown RBP23.22■■□□□ 1.31
UPF1-209ENST00000600310 MAP3K10Q02779 954 aa23.21■■□□□ 1.31
UPF1-209ENST00000600310 MOB2Q70IA6 237 aa23.21■■□□□ 1.31
UPF1-209ENST00000600310 JMYQ8N9B5 988 aa23.21■■□□□ 1.31
UPF1-209ENST00000600310 PI4KBQ9UBF8 816 aa23.21■■□□□ 1.31
UPF1-209ENST00000600310 SAP30BPQ9UHR5 308 aaKnown RBP23.21■■□□□ 1.31
UPF1-209ENST00000600310 ANGEL1Q9UNK9 670 aaKnown RBP23.21■■□□□ 1.31
UPF1-209ENST00000600310 FZD1Q9UP38 647 aa23.21■■□□□ 1.31
UPF1-209ENST00000600310 PAPPA2Q9BXP8 1791 aa23.2■■□□□ 1.3
UPF1-209ENST00000600310 GSG1L2A8MUP6 293 aa23.2■■□□□ 1.3
UPF1-209ENST00000600310 UBE2Q2LH0YL09 131 aa23.2■■□□□ 1.3
UPF1-209ENST00000600310 GIMAP6Q6P9H5 292 aa23.2■■□□□ 1.3
UPF1-209ENST00000600310 CCDC129Q6ZRS4 1044 aa23.2■■□□□ 1.3
UPF1-209ENST00000600310 MIGA2Q7L4E1 593 aa23.2■■□□□ 1.3
UPF1-209ENST00000600310 MCM9Q9NXL9 1143 aa23.2■■□□□ 1.3
UPF1-209ENST00000600310 PATL2C9JE40 543 aaKnown RBP23.19■■□□□ 1.3
UPF1-209ENST00000600310 TBC1D12O60347 775 aa23.19■■□□□ 1.3
UPF1-209ENST00000600310 CHMLP26374 656 aa23.19■■□□□ 1.3
UPF1-209ENST00000600310 IREB2P48200 963 aaKnown RBP23.19■■□□□ 1.3
UPF1-209ENST00000600310 HUNKP57058 714 aa23.19■■□□□ 1.3
UPF1-209ENST00000600310 LDLRAD1Q5T700 205 aa23.19■■□□□ 1.3
UPF1-209ENST00000600310 CWC27Q6UX04 472 aaKnown RBP23.19■■□□□ 1.3
UPF1-209ENST00000600310 TTC6Q86TZ1 520 aa23.19■■□□□ 1.3
UPF1-209ENST00000600310 FOXP4Q8IVH2 680 aaPredicted RBP23.19■■□□□ 1.3
UPF1-209ENST00000600310 DDRGK1Q96HY6 314 aa23.19■■□□□ 1.3
UPF1-209ENST00000600310 HHIPL1Q96JK4 782 aa23.19■■□□□ 1.3
UPF1-209ENST00000600310 ZNF341Q9BYN7 854 aa23.19■■□□□ 1.3
UPF1-209ENST00000600310 CDK5RAP2Q96SN8 1893 aa23.18■■□□□ 1.3
UPF1-209ENST00000600310 FOCADQ5VW36 1801 aa23.18■■□□□ 1.3
UPF1-209ENST00000600310 HLA-DOAP06340 250 aa23.18■■□□□ 1.3
UPF1-209ENST00000600310 METTL16Q86W50 562 aaKnown RBP23.18■■□□□ 1.3
UPF1-209ENST00000600310 CCDC171Q6TFL3 1326 aa23.17■■□□□ 1.3
UPF1-209ENST00000600310 UNCXA6NJT0 531 aa23.17■■□□□ 1.3
UPF1-209ENST00000600310 RASSF10A6NK89 507 aa23.17■■□□□ 1.3
UPF1-209ENST00000600310 POLR3DP05423 398 aaPredicted RBP23.17■■□□□ 1.3
UPF1-209ENST00000600310 ZNF589Q86UQ0 364 aaPredicted RBP23.17■■□□□ 1.3
UPF1-209ENST00000600310 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.17■■□□□ 1.3
UPF1-209ENST00000600310 HERC5Q9UII4 1024 aaKnown RBP23.17■■□□□ 1.3
UPF1-209ENST00000600310 ZNF112Q9UJU3 913 aa23.17■■□□□ 1.3
UPF1-209ENST00000600310 SLURP2P0DP57 97 aa23.16■■□□□ 1.3
UPF1-209ENST00000600310 MFAP1P55081 439 aaKnown RBP23.16■■□□□ 1.3
UPF1-209ENST00000600310 MAP3K9P80192 1104 aa23.16■■□□□ 1.3
UPF1-209ENST00000600310 EHD4Q9H223 541 aa23.16■■□□□ 1.3
UPF1-209ENST00000600310 EPB41L4AQ9HCS5 686 aaPredicted RBP23.16■■□□□ 1.3
UPF1-209ENST00000600310 PCNTO95613 3336 aa23.16■■□□□ 1.3
UPF1-209ENST00000600310 USP17L12C9JPN9 530 aa23.15■■□□□ 1.3
UPF1-209ENST00000600310 USP17L21D6R901 530 aa23.15■■□□□ 1.3
UPF1-209ENST00000600310 FOXP2O15409 715 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms