RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SMC1BQ8NDV3 1235 aa22.91■■□□□ 1.26
UPF1-207ENST00000599848 MIS12Q9H081 205 aa22.91■■□□□ 1.26
UPF1-207ENST00000599848 SBNO2Q9Y2G9 1366 aa22.91■■□□□ 1.26
UPF1-207ENST00000599848 CETN3O15182 167 aa22.91■■□□□ 1.26
UPF1-207ENST00000599848 HCLS1P14317 486 aaPredicted RBP22.91■■□□□ 1.26
UPF1-207ENST00000599848 SRGAP1Q7Z6B7 1085 aa22.91■■□□□ 1.26
UPF1-207ENST00000599848 CCDC110Q8TBZ0 833 aa22.91■■□□□ 1.26
UPF1-207ENST00000599848 TMX3Q96JJ7 454 aa22.91■■□□□ 1.26
UPF1-207ENST00000599848 WDR62O43379 1518 aa22.91■■□□□ 1.26
UPF1-207ENST00000599848 CWF19L2Q2TBE0 894 aaKnown RBP22.91■■□□□ 1.26
UPF1-207ENST00000599848 E7EVH7 732 aa22.9■■□□□ 1.26
UPF1-207ENST00000599848 ADPGKQ9BRR6 497 aa22.9■■□□□ 1.26
UPF1-207ENST00000599848 MKRN1Q9UHC7 482 aaKnown RBP22.9■■□□□ 1.26
UPF1-207ENST00000599848 GINS2Q9Y248 185 aa22.9■■□□□ 1.26
UPF1-207ENST00000599848 MRPL11Q9Y3B7 192 aaKnown RBP22.9■■□□□ 1.26
UPF1-207ENST00000599848 OSBPP22059 807 aa22.9■■□□□ 1.26
UPF1-207ENST00000599848 FAM47CQ5HY64 1035 aa22.9■■□□□ 1.26
UPF1-207ENST00000599848 ARMC9Q7Z3E5 817 aa22.9■■□□□ 1.26
UPF1-207ENST00000599848 BICC1Q9H694 974 aaKnown RBP22.9■■□□□ 1.26
UPF1-207ENST00000599848 AGTPBP1Q9UPW5 1226 aa22.9■■□□□ 1.26
UPF1-207ENST00000599848 DNM3Q9UQ16 869 aa22.9■■□□□ 1.26
UPF1-207ENST00000599848 TBC1D31Q96DN5 1066 aa22.9■■□□□ 1.26
UPF1-207ENST00000599848 MLXIPQ9HAP2 919 aa22.9■■□□□ 1.26
UPF1-207ENST00000599848 OPA1O60313 960 aa22.9■■□□□ 1.26
UPF1-207ENST00000599848 ERCC5P28715 1186 aaPredicted RBP22.9■■□□□ 1.26
UPF1-207ENST00000599848 TNNC1P63316 161 aa22.9■■□□□ 1.26
UPF1-207ENST00000599848 C8orf58Q8NAV2 365 aa22.9■■□□□ 1.26
UPF1-207ENST00000599848 QTRT2Q9H974 415 aaKnown RBP22.9■■□□□ 1.26
UPF1-207ENST00000599848 WDR97A6NE52 1622 aa22.9■■□□□ 1.26
UPF1-207ENST00000599848 TMOD1P28289 359 aa22.89■■□□□ 1.26
UPF1-207ENST00000599848 TRIM14Q14142 442 aa22.89■■□□□ 1.26
UPF1-207ENST00000599848 TTLL7Q6ZT98 887 aa22.89■■□□□ 1.26
UPF1-207ENST00000599848 GLG1Q92896 1179 aa22.89■■□□□ 1.26
UPF1-207ENST00000599848 SRRTQ9BXP5 876 aaKnown RBP22.89■■□□□ 1.26
UPF1-207ENST00000599848 ZRANB1Q9UGI0 708 aa22.89■■□□□ 1.26
UPF1-207ENST00000599848 PAXBP1Q9Y5B6 917 aa22.89■■□□□ 1.26
UPF1-207ENST00000599848 ARHGEF37A1IGU5 675 aa22.89■■□□□ 1.25
UPF1-207ENST00000599848 PKD2L1Q9P0L9 805 aa22.89■■□□□ 1.25
UPF1-207ENST00000599848 PA2G4Q9UQ80 394 aaKnown RBP22.89■■□□□ 1.25
UPF1-207ENST00000599848 CRCPO75575 148 aa22.89■■□□□ 1.25
UPF1-207ENST00000599848 MXRA7P84157 204 aa22.89■■□□□ 1.25
UPF1-207ENST00000599848 TRAF5O00463 557 aa22.89■■□□□ 1.25
UPF1-207ENST00000599848 AOX1Q06278 1338 aa22.88■■□□□ 1.25
UPF1-207ENST00000599848 XPOTO43592 962 aaKnown RBP22.88■■□□□ 1.25
UPF1-207ENST00000599848 CPXCR1Q8N123 301 aa22.88■■□□□ 1.25
UPF1-207ENST00000599848 JPH2Q9BR39 696 aaPredicted RBP22.88■■□□□ 1.25
UPF1-207ENST00000599848 PRPF6O94906 941 aaKnown RBP22.88■■□□□ 1.25
UPF1-207ENST00000599848 TNFAIP3P21580 790 aa22.88■■□□□ 1.25
UPF1-207ENST00000599848 CREB3L3Q68CJ9 461 aa22.88■■□□□ 1.25
UPF1-207ENST00000599848 LRRC2Q9BYS8 371 aa22.88■■□□□ 1.25
UPF1-207ENST00000599848 TRAPPC8Q9Y2L5 1435 aa22.87■■□□□ 1.25
UPF1-207ENST00000599848 PRKG1Q13976 671 aa22.87■■□□□ 1.25
UPF1-207ENST00000599848 DCAF17Q5H9S7 520 aaPredicted RBP22.87■■□□□ 1.25
UPF1-207ENST00000599848 UTP14CQ5TAP6 766 aaKnown RBP22.87■■□□□ 1.25
UPF1-207ENST00000599848 ATP8A2Q9NTI2 1148 aa22.87■■□□□ 1.25
UPF1-207ENST00000599848 USP40Q9NVE5 1235 aa22.87■■□□□ 1.25
UPF1-207ENST00000599848 CFAP157Q5JU67 520 aa22.87■■□□□ 1.25
UPF1-207ENST00000599848 XAGE2Q96GT9 111 aa22.87■■□□□ 1.25
UPF1-207ENST00000599848 LUC7L2Q9Y383 392 aaKnown RBP22.87■■□□□ 1.25
UPF1-207ENST00000599848 NT5C3AQ9H0P0 336 aa22.87■■□□□ 1.25
UPF1-207ENST00000599848 AKNAD1Q5T1N1 836 aa22.87■■□□□ 1.25
UPF1-207ENST00000599848 TAOK1Q7L7X3 1001 aa22.87■■□□□ 1.25
UPF1-207ENST00000599848 GOLGA6CA6NDK9 693 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 GOLGA6BA6NDN3 693 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 ZWINTO95229 277 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 GOLGA6DP0CG33 693 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 ATP5DP30049 168 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 USP14P54578 494 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 PPP1R7Q15435 360 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 ERCC6LQ2NKX8 1250 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 RNF187Q5TA31 235 aaPredicted RBP22.86■■□□□ 1.25
UPF1-207ENST00000599848 NECAB1Q8N987 351 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 GIMAP7Q8NHV1 300 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 GOLGA6AQ9NYA3 693 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 TPCN1Q9ULQ1 816 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 SHANK2Q9UPX8 1470 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 TMEM110-MUSTN1A8MSY1 372 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 MAP7Q14244 749 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 TNNI3KQ59H18 835 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 EXOC8Q8IYI6 725 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 FAM200AQ8TCP9 573 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 TTF2Q9UNY4 1162 aaKnown RBP22.86■■□□□ 1.25
UPF1-207ENST00000599848 FPGT-TNNI3KV9GXZ4 949 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 CHMP2AO43633 222 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 MARCKSP29966 332 aaPredicted RBP22.86■■□□□ 1.25
UPF1-207ENST00000599848 YARSP54577 528 aaKnown RBP22.86■■□□□ 1.25
UPF1-207ENST00000599848 UBXN1Q04323 297 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 CNGA4Q8IV77 575 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 IPO4Q8TEX9 1081 aaKnown RBP22.86■■□□□ 1.25
UPF1-207ENST00000599848 DCTPP1Q9H773 170 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 ZYXQ15942 572 aaKnown RBP22.86■■□□□ 1.25
UPF1-207ENST00000599848 LLPHQ9BRT6 129 aaKnown RBP22.86■■□□□ 1.25
UPF1-207ENST00000599848 TRPC6Q9Y210 931 aa22.86■■□□□ 1.25
UPF1-207ENST00000599848 GCKRQ14397 625 aa22.85■■□□□ 1.25
UPF1-207ENST00000599848 ELP1O95163 1332 aa22.85■■□□□ 1.25
UPF1-207ENST00000599848 KRT26Q7Z3Y9 468 aa22.85■■□□□ 1.25
UPF1-207ENST00000599848 DEPTORQ8TB45 409 aa22.85■■□□□ 1.25
UPF1-207ENST00000599848 FAM184BQ9ULE4 1060 aa22.85■■□□□ 1.25
UPF1-207ENST00000599848 KDM3AQ9Y4C1 1321 aa22.85■■□□□ 1.25
UPF1-207ENST00000599848 F13A1P00488 732 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms