RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 CYP2E1P05181 493 aaPredicted RBP17.22■□□□□ 0.35
LIG1-218ENST00000599322 GTF2A2P52657 109 aa17.22■□□□□ 0.35
LIG1-218ENST00000599322 RRP1P56182 461 aaKnown RBP17.22■□□□□ 0.35
LIG1-218ENST00000599322 VGLL4Q14135 290 aa17.22■□□□□ 0.35
LIG1-218ENST00000599322 ERO1BQ86YB8 467 aa17.22■□□□□ 0.35
LIG1-218ENST00000599322 TEX11Q8IYF3 940 aa17.22■□□□□ 0.35
LIG1-218ENST00000599322 LRRCC1Q9C099 1032 aa17.22■□□□□ 0.35
LIG1-218ENST00000599322 TLR7Q9NYK1 1049 aaKnown RBP17.22■□□□□ 0.35
LIG1-218ENST00000599322 FAM198AQ9UFP1 575 aa17.22■□□□□ 0.35
LIG1-218ENST00000599322 PDE4DIPQ5VU43 2346 aa17.21■□□□□ 0.35
LIG1-218ENST00000599322 NPM3O75607 178 aaKnown RBP17.21■□□□□ 0.35
LIG1-218ENST00000599322 SOX10P56693 466 aa17.21■□□□□ 0.35
LIG1-218ENST00000599322 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.21■□□□□ 0.35
LIG1-218ENST00000599322 CDAN1Q8IWY9 1227 aa17.21■□□□□ 0.35
LIG1-218ENST00000599322 SIRT2Q8IXJ6 389 aa17.21■□□□□ 0.35
LIG1-218ENST00000599322 OTUD5Q96G74 571 aa17.21■□□□□ 0.35
LIG1-218ENST00000599322 MYH2Q9UKX2 1941 aa17.21■□□□□ 0.35
LIG1-218ENST00000599322 ZNF296Q8WUU4 475 aaPredicted RBP17.2■□□□□ 0.34
LIG1-218ENST00000599322 GPATCH3Q96I76 525 aa17.2■□□□□ 0.34
LIG1-218ENST00000599322 PICK1Q9NRD5 415 aa17.2■□□□□ 0.34
LIG1-218ENST00000599322 AK9Q5TCS8 1911 aa17.19■□□□□ 0.34
LIG1-218ENST00000599322 SPDYE5A6NIY4 337 aa17.19■□□□□ 0.34
LIG1-218ENST00000599322 CYP7A1P22680 504 aa17.19■□□□□ 0.34
LIG1-218ENST00000599322 IFNL1Q8IU54 200 aa17.19■□□□□ 0.34
LIG1-218ENST00000599322 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.19■□□□□ 0.34
LIG1-218ENST00000599322 ZKSCAN4Q969J2 545 aaPredicted RBP17.19■□□□□ 0.34
LIG1-218ENST00000599322 TRIM34Q9BYJ4 488 aa17.19■□□□□ 0.34
LIG1-218ENST00000599322 AATFQ9NY61 560 aaKnown RBP eCLIP17.19■□□□□ 0.34
LIG1-218ENST00000599322 SLC34A2O95436 690 aa17.18■□□□□ 0.34
LIG1-218ENST00000599322 CETPP11597 493 aa17.18■□□□□ 0.34
LIG1-218ENST00000599322 PPP4CP60510 307 aa17.18■□□□□ 0.34
LIG1-218ENST00000599322 PPATQ06203 517 aa17.18■□□□□ 0.34
LIG1-218ENST00000599322 SNAPC2Q13487 334 aa17.18■□□□□ 0.34
LIG1-218ENST00000599322 DNAJC2Q99543 621 aaKnown RBP17.18■□□□□ 0.34
LIG1-218ENST00000599322 DHX36Q9H2U1 1008 aaKnown RBP17.18■□□□□ 0.34
LIG1-218ENST00000599322 R3HDMLQ9H3Y0 253 aa17.18■□□□□ 0.34
LIG1-218ENST00000599322 CCL15-CCL14A0A0B4J2E2 113 aa17.17■□□□□ 0.34
LIG1-218ENST00000599322 GPR25O00155 361 aa17.17■□□□□ 0.34
LIG1-218ENST00000599322 RHBDL3P58872 404 aa17.17■□□□□ 0.34
LIG1-218ENST00000599322 PPIL2Q13356 520 aa17.17■□□□□ 0.34
LIG1-218ENST00000599322 CCL15Q16663 113 aa17.17■□□□□ 0.34
LIG1-218ENST00000599322 ZFPM1Q8IX07 1006 aa17.17■□□□□ 0.34
LIG1-218ENST00000599322 MAGEB6Q8N7X4 407 aa17.17■□□□□ 0.34
LIG1-218ENST00000599322 PIH1D3Q9NQM4 214 aaKnown RBP17.17■□□□□ 0.34
LIG1-218ENST00000599322 HPS5Q9UPZ3 1129 aa17.17■□□□□ 0.34
LIG1-218ENST00000599322 INPP5BP32019 993 aa17.16■□□□□ 0.34
LIG1-218ENST00000599322 USP5P45974 858 aa17.16■□□□□ 0.34
LIG1-218ENST00000599322 NOM1Q5C9Z4 860 aaKnown RBP17.16■□□□□ 0.34
LIG1-218ENST00000599322 SH3RF3Q8TEJ3 882 aaPredicted RBP17.16■□□□□ 0.34
LIG1-218ENST00000599322 CFHR5Q9BXR6 569 aa17.16■□□□□ 0.34
LIG1-218ENST00000599322 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.16■□□□□ 0.34
LIG1-218ENST00000599322 OSBPL5Q9H0X9 879 aaPredicted RBP17.16■□□□□ 0.34
LIG1-218ENST00000599322 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.16■□□□□ 0.34
LIG1-218ENST00000599322 ZNF112Q9UJU3 913 aa17.16■□□□□ 0.34
LIG1-218ENST00000599322 SNCAIPQ9Y6H5 919 aa17.16■□□□□ 0.34
LIG1-218ENST00000599322 TESPA1A2RU30 521 aaPredicted RBP17.15■□□□□ 0.34
LIG1-218ENST00000599322 FKTNO75072 461 aa17.15■□□□□ 0.34
LIG1-218ENST00000599322 HLA-DOAP06340 250 aa17.15■□□□□ 0.34
LIG1-218ENST00000599322 AAMPQ13685 434 aa17.15■□□□□ 0.34
LIG1-218ENST00000599322 ARHGEF6Q15052 776 aa17.15■□□□□ 0.34
LIG1-218ENST00000599322 CRACR2BQ8N4Y2 399 aaPredicted RBP17.15■□□□□ 0.34
LIG1-218ENST00000599322 ZNF384Q8TF68 577 aa17.15■□□□□ 0.34
LIG1-218ENST00000599322 TGFBRAP1Q8WUH2 860 aa17.15■□□□□ 0.34
LIG1-218ENST00000599322 DCTPP1Q9H773 170 aa17.15■□□□□ 0.34
LIG1-218ENST00000599322 ZFYVE28Q9HCC9 887 aa17.15■□□□□ 0.34
LIG1-218ENST00000599322 DDX4Q9NQI0 724 aaKnown RBP17.15■□□□□ 0.34
LIG1-218ENST00000599322 PI4KBQ9UBF8 816 aa17.15■□□□□ 0.34
LIG1-218ENST00000599322 DDTLA6NHG4 134 aaPredicted RBP17.14■□□□□ 0.33
LIG1-218ENST00000599322 GOLIM4O00461 696 aa17.14■□□□□ 0.33
LIG1-218ENST00000599322 TBC1D12O60347 775 aa17.14■□□□□ 0.33
LIG1-218ENST00000599322 CTNND1O60716 968 aaKnown RBP17.14■□□□□ 0.33
LIG1-218ENST00000599322 ATP5JP18859 108 aa17.14■□□□□ 0.33
LIG1-218ENST00000599322 GJA5P36382 358 aa17.14■□□□□ 0.33
LIG1-218ENST00000599322 PKN2Q16513 984 aaKnown RBP17.14■□□□□ 0.33
LIG1-218ENST00000599322 NOL9Q5SY16 702 aaKnown RBP17.14■□□□□ 0.33
LIG1-218ENST00000599322 SLC9C2Q5TAH2 1124 aa17.14■□□□□ 0.33
LIG1-218ENST00000599322 SCYL3Q8IZE3 742 aa17.14■□□□□ 0.33
LIG1-218ENST00000599322 BOLA2Q9H3K6 86 aa17.14■□□□□ 0.33
LIG1-218ENST00000599322 HERC5Q9UII4 1024 aaKnown RBP17.14■□□□□ 0.33
LIG1-218ENST00000599322 TAF1CQ15572 869 aaPredicted RBP17.13■□□□□ 0.33
LIG1-218ENST00000599322 ZSCAN25Q6NSZ9 544 aa17.13■□□□□ 0.33
LIG1-218ENST00000599322 FOXP4Q8IVH2 680 aaPredicted RBP17.13■□□□□ 0.33
LIG1-218ENST00000599322 MAPKAPK5Q8IW41 473 aa17.13■□□□□ 0.33
LIG1-218ENST00000599322 CNKSR2Q8WXI2 1034 aa17.13■□□□□ 0.33
LIG1-218ENST00000599322 ZCCHC17Q9NP64 241 aaKnown RBP17.13■□□□□ 0.33
LIG1-218ENST00000599322 ECHDC1Q9NTX5 307 aa17.13■□□□□ 0.33
LIG1-218ENST00000599322 PAG1Q9NWQ8 432 aa17.13■□□□□ 0.33
LIG1-218ENST00000599322 ATRNL1Q5VV63 1379 aa17.13■□□□□ 0.33
LIG1-218ENST00000599322 HTTP42858 3142 aa17.12■□□□□ 0.33
LIG1-218ENST00000599322 MAGEB6P1A0A0J9YX57 407 aa17.12■□□□□ 0.33
LIG1-218ENST00000599322 IGF2BP3O00425 579 aaKnown RBP eCLIP17.12■□□□□ 0.33
LIG1-218ENST00000599322 CXCL11O14625 94 aa17.12■□□□□ 0.33
LIG1-218ENST00000599322 IRF6O14896 467 aa17.12■□□□□ 0.33
LIG1-218ENST00000599322 MAP3K10Q02779 954 aa17.12■□□□□ 0.33
LIG1-218ENST00000599322 SH3BP5LQ7L8J4 393 aa17.12■□□□□ 0.33
LIG1-218ENST00000599322 MIGA1Q8NAN2 632 aa17.12■□□□□ 0.33
LIG1-218ENST00000599322 MS4A4AQ96JQ5 239 aa17.12■□□□□ 0.33
LIG1-218ENST00000599322 CRBNQ96SW2 442 aa17.12■□□□□ 0.33
LIG1-218ENST00000599322 ANTXR1Q9H6X2 564 aa17.12■□□□□ 0.33
LIG1-218ENST00000599322 NDUFB9Q9Y6M9 179 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms