RNA–Protein interactions for RNA: ENST00000593912.5

VRK3-204, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 551 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-204ENST00000593912 ABCB7O75027 752 aa4.17□□□□□ -1.74
VRK3-204ENST00000593912 SNRPA1P09661 255 aaKnown RBP4.17□□□□□ -1.74
VRK3-204ENST00000593912 IL9P15248 144 aa4.17□□□□□ -1.74
VRK3-204ENST00000593912 IL13P35225 146 aa4.17□□□□□ -1.74
VRK3-204ENST00000593912 TRIM60Q495X7 471 aa4.17□□□□□ -1.74
VRK3-204ENST00000593912 PARP10Q53GL7 1025 aa4.17□□□□□ -1.74
VRK3-204ENST00000593912 MAP3K21Q5TCX8 1036 aa4.17□□□□□ -1.74
VRK3-204ENST00000593912 GPAT2Q6NUI2 795 aa4.17□□□□□ -1.74
VRK3-204ENST00000593912 POTEBQ6S5H4 581 aa4.17□□□□□ -1.74
VRK3-204ENST00000593912 GIGYF2Q6Y7W6 1299 aaKnown RBP4.17□□□□□ -1.74
VRK3-204ENST00000593912 ERO1BQ86YB8 467 aa4.17□□□□□ -1.74
VRK3-204ENST00000593912 HERVK_113Q902F9 699 aa4.17□□□□□ -1.74
VRK3-204ENST00000593912 ATOH1Q92858 354 aaPredicted RBP4.17□□□□□ -1.74
VRK3-204ENST00000593912 HLA-CQ95604 372 aa4.17□□□□□ -1.74
VRK3-204ENST00000593912 COA7Q96BR5 231 aa4.17□□□□□ -1.74
VRK3-204ENST00000593912 PRMT6Q96LA8 375 aaPredicted RBP4.17□□□□□ -1.74
VRK3-204ENST00000593912 MFSD14AQ96MC6 490 aa4.17□□□□□ -1.74
VRK3-204ENST00000593912 TEPSINQ96N21 525 aa4.17□□□□□ -1.74
VRK3-204ENST00000593912 PARK7Q99497 189 aaKnown RBP4.17□□□□□ -1.74
VRK3-204ENST00000593912 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.17□□□□□ -1.741e-9■■□□□ 11.6
VRK3-204ENST00000593912 PODXL2Q9NZ53 605 aa4.17□□□□□ -1.74
VRK3-204ENST00000593912 COG5Q9UP83 839 aa4.17□□□□□ -1.74
VRK3-204ENST00000593912 KCNH4Q9UQ05 1017 aa4.17□□□□□ -1.74
VRK3-204ENST00000593912 NAV2Q8IVL1 2488 aa4.16□□□□□ -1.74
VRK3-204ENST00000593912 ZZEF1O43149 2961 aa4.16□□□□□ -1.74
VRK3-204ENST00000593912 SPDYE2BA6NHP3 402 aa4.16□□□□□ -1.74
VRK3-204ENST00000593912 EPOPA6NHQ4 379 aa4.16□□□□□ -1.74
VRK3-204ENST00000593912 F8W031 263 aaPredicted RBP4.16□□□□□ -1.74
VRK3-204ENST00000593912 H0Y858 1186 aa4.16□□□□□ -1.74
VRK3-204ENST00000593912 SPDYE6P0CI01 402 aa4.16□□□□□ -1.74
VRK3-204ENST00000593912 CACNB2Q08289 660 aaPredicted RBP4.16□□□□□ -1.74
VRK3-204ENST00000593912 CFAP100Q494V2 611 aa4.16□□□□□ -1.74
VRK3-204ENST00000593912 STRIP1Q5VSL9 837 aa4.16□□□□□ -1.74
VRK3-204ENST00000593912 WRNIP1Q96S55 665 aa4.16□□□□□ -1.74
VRK3-204ENST00000593912 TMEM39BQ9GZU3 492 aa4.16□□□□□ -1.74
VRK3-204ENST00000593912 SEC31BQ9NQW1 1179 aa4.16□□□□□ -1.74
VRK3-204ENST00000593912 TLR9Q9NR96 1032 aa4.16□□□□□ -1.74
VRK3-204ENST00000593912 MTCH2Q9Y6C9 303 aa4.16□□□□□ -1.74
VRK3-204ENST00000593912 U3KPZ7 1027 aaPredicted RBP4.16□□□□□ -1.74
VRK3-204ENST00000593912 MYO3BQ8WXR4 1341 aa4.16□□□□□ -1.74
VRK3-204ENST00000593912 COL4A4P53420 1690 aaPredicted RBP4.16□□□□□ -1.74
VRK3-204ENST00000593912 FRYQ5TBA9 3013 aa4.16□□□□□ -1.74
VRK3-204ENST00000593912 TCP10L2B9ZVM9 353 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 MYOGP15173 224 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 CYP2B6P20813 491 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 INPP5BP32019 993 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 RABGGTBP53611 331 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 RPS8P62241 208 aaKnown RBP4.15□□□□□ -1.75
VRK3-204ENST00000593912 GTF2IP78347 998 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 FPGSQ05932 587 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 CCL14Q16627 93 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 RTL5Q5HYW3 569 aaPredicted RBP4.15□□□□□ -1.75
VRK3-204ENST00000593912 TTLL5Q6EMB2 1281 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 SLC39A5Q6ZMH5 540 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 TXNRD3Q86VQ6 643 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 NLRP10Q86W26 655 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 LURAP1LQ8IV03 231 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 ADSSL1Q8N142 457 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 CERS5Q8N5B7 392 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 ANKRD13CQ8N6S4 541 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 THUMPD2Q9BTF0 503 aaKnown RBP4.15□□□□□ -1.75
VRK3-204ENST00000593912 CERS4Q9HA82 394 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 SLC28A3Q9HAS3 691 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 SH2B1Q9NRF2 756 aaPredicted RBP4.15□□□□□ -1.75
VRK3-204ENST00000593912 TRMT112Q9UI30 125 aaKnown RBP4.15□□□□□ -1.75
VRK3-204ENST00000593912 GJD2Q9UKL4 321 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 BPTFQ12830 3046 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 PTPRFP10586 1907 aa4.15□□□□□ -1.75
VRK3-204ENST00000593912 NBEAQ8NFP9 2946 aa4.14□□□□□ -1.75
VRK3-204ENST00000593912 GNAT3A8MTJ3 354 aa4.14□□□□□ -1.75
VRK3-204ENST00000593912 PROB1E7EW31 1015 aa4.14□□□□□ -1.75
VRK3-204ENST00000593912 MYO1BO43795 1136 aa4.14□□□□□ -1.75
VRK3-204ENST00000593912 RAG1P15918 1043 aa4.14□□□□□ -1.75
VRK3-204ENST00000593912 KLRK1P26718 216 aa4.14□□□□□ -1.75
VRK3-204ENST00000593912 VCPP55072 806 aaKnown RBP4.14□□□□□ -1.75
VRK3-204ENST00000593912 TLE2Q04725 743 aa4.14□□□□□ -1.75
VRK3-204ENST00000593912 GJC2Q5T442 439 aaPredicted RBP4.14□□□□□ -1.75
VRK3-204ENST00000593912 PPP2R2DQ66LE6 453 aa4.14□□□□□ -1.75
VRK3-204ENST00000593912 C16orf59Q7L2K0 433 aa4.14□□□□□ -1.75
VRK3-204ENST00000593912 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.14□□□□□ -1.75
VRK3-204ENST00000593912 FERMT2Q96AC1 680 aa4.14□□□□□ -1.75
VRK3-204ENST00000593912 TDRD3Q9H7E2 651 aaKnown RBP4.14□□□□□ -1.75
VRK3-204ENST00000593912 MSRAQ9UJ68 235 aa4.14□□□□□ -1.75
VRK3-204ENST00000593912 SH3TC1Q8TE82 1336 aa4.14□□□□□ -1.75
VRK3-204ENST00000593912 MED23Q9ULK4 1368 aa4.14□□□□□ -1.75
VRK3-204ENST00000593912 CEP250Q9BV73 2442 aa4.13□□□□□ -1.75
VRK3-204ENST00000593912 GTPBP6O43824 516 aaPredicted RBP4.13□□□□□ -1.75
VRK3-204ENST00000593912 PEX10O60683 326 aa4.13□□□□□ -1.75
VRK3-204ENST00000593912 ANXA1P04083 346 aa4.13□□□□□ -1.75
VRK3-204ENST00000593912 ACRP10323 421 aa4.13□□□□□ -1.75
VRK3-204ENST00000593912 RBM5P52756 815 aaKnown RBP eCLIP4.13□□□□□ -1.75
VRK3-204ENST00000593912 CACNB3P54284 484 aa4.13□□□□□ -1.75
VRK3-204ENST00000593912 PPATQ06203 517 aa4.13□□□□□ -1.75
VRK3-204ENST00000593912 SF3B3Q15393 1217 aaKnown RBP4.13□□□□□ -1.75
VRK3-204ENST00000593912 RAB30Q15771 203 aa4.13□□□□□ -1.75
VRK3-204ENST00000593912 TMEM240Q5SV17 173 aa4.13□□□□□ -1.75
VRK3-204ENST00000593912 RASIP1Q5U651 963 aa4.13□□□□□ -1.75
VRK3-204ENST00000593912 ANO1Q5XXA6 986 aa4.13□□□□□ -1.75
VRK3-204ENST00000593912 GADL1Q6ZQY3 521 aa4.13□□□□□ -1.75
VRK3-204ENST00000593912 SMCR8Q8TEV9 937 aaPredicted RBP4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms