RNA–Protein interactions for RNA: ENST00000593425.5

LIG1-205, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-205ENST00000593425 ABCF2Q9UG63 623 aa20.3■□□□□ 0.84
LIG1-205ENST00000593425 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.3■□□□□ 0.84
LIG1-205ENST00000593425 PDS5AQ29RF7 1337 aaKnown RBP20.29■□□□□ 0.84
LIG1-205ENST00000593425 A0A1B0GUL7 405 aa20.29■□□□□ 0.84
LIG1-205ENST00000593425 DDTLA6NHG4 134 aaPredicted RBP20.29■□□□□ 0.84
LIG1-205ENST00000593425 CYP2C8P10632 490 aa20.29■□□□□ 0.84
LIG1-205ENST00000593425 TFCP2Q12800 502 aa20.29■□□□□ 0.84
LIG1-205ENST00000593425 XAGE2Q96GT9 111 aa20.29■□□□□ 0.84
LIG1-205ENST00000593425 CXCL11O14625 94 aa20.28■□□□□ 0.84
LIG1-205ENST00000593425 SRGAP3O43295 1099 aa20.28■□□□□ 0.84
LIG1-205ENST00000593425 BCRP11274 1271 aa20.28■□□□□ 0.84
LIG1-205ENST00000593425 BTDP43251 543 aa20.28■□□□□ 0.84
LIG1-205ENST00000593425 ZSCAN29Q8IWY8 852 aaPredicted RBP20.28■□□□□ 0.84
LIG1-205ENST00000593425 SHISA4Q96DD7 197 aa20.28■□□□□ 0.84
LIG1-205ENST00000593425 PARK7Q99497 189 aaKnown RBP20.28■□□□□ 0.84
LIG1-205ENST00000593425 ZHX2Q9Y6X8 837 aa20.28■□□□□ 0.84
LIG1-205ENST00000593425 MROH7-TTC4A0A0A0MT08 1334 aa20.27■□□□□ 0.84
LIG1-205ENST00000593425 MYPNQ86TC9 1320 aa20.27■□□□□ 0.84
LIG1-205ENST00000593425 A0A0G2JLL6 359 aaPredicted RBP20.27■□□□□ 0.84
LIG1-205ENST00000593425 FMNL1O95466 1100 aaPredicted RBP20.27■□□□□ 0.84
LIG1-205ENST00000593425 PTPRAP18433 802 aa20.27■□□□□ 0.84
LIG1-205ENST00000593425 PICALMQ13492 652 aa20.27■□□□□ 0.84
LIG1-205ENST00000593425 MTX1Q13505 466 aa20.27■□□□□ 0.84
LIG1-205ENST00000593425 PRRT2Q7Z6L0 340 aaPredicted RBP20.27■□□□□ 0.84
LIG1-205ENST00000593425 ZNF384Q8TF68 577 aa20.27■□□□□ 0.84
LIG1-205ENST00000593425 FAM163AQ96GL9 167 aaPredicted RBP20.27■□□□□ 0.84
LIG1-205ENST00000593425 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.27■□□□□ 0.84
LIG1-205ENST00000593425 MAP3K10Q02779 954 aa20.26■□□□□ 0.83
LIG1-205ENST00000593425 RAET1EQ8TD07 263 aa20.26■□□□□ 0.83
LIG1-205ENST00000593425 PICK1Q9NRD5 415 aa20.26■□□□□ 0.83
LIG1-205ENST00000593425 TNNQ9UQP3 1299 aa20.26■□□□□ 0.83
LIG1-205ENST00000593425 AFG3L2Q9Y4W6 797 aa20.26■□□□□ 0.83
LIG1-205ENST00000593425 ATAD5Q96QE3 1844 aa20.25■□□□□ 0.83
LIG1-205ENST00000593425 GNAI3P08754 354 aa20.25■□□□□ 0.83
LIG1-205ENST00000593425 HOXD10P28358 340 aa20.25■□□□□ 0.83
LIG1-205ENST00000593425 GRK4P32298 578 aa20.25■□□□□ 0.83
LIG1-205ENST00000593425 RHBDL3P58872 404 aa20.25■□□□□ 0.83
LIG1-205ENST00000593425 MECOMQ03112 1051 aa20.25■□□□□ 0.83
LIG1-205ENST00000593425 PRKCZQ05513 592 aa20.25■□□□□ 0.83
LIG1-205ENST00000593425 CCDC84Q86UT8 332 aaPredicted RBP20.25■□□□□ 0.83
LIG1-205ENST00000593425 SLF2Q8IX21 1173 aa20.25■□□□□ 0.83
LIG1-205ENST00000593425 ARHGAP45Q92619 1136 aa20.25■□□□□ 0.83
LIG1-205ENST00000593425 AKAP2Q9Y2D5 859 aa20.25■□□□□ 0.83
LIG1-205ENST00000593425 MVPQ14764 893 aaKnown RBP20.24■□□□□ 0.83
LIG1-205ENST00000593425 SPTY2D1Q68D10 685 aaPredicted RBP20.24■□□□□ 0.83
LIG1-205ENST00000593425 PI16Q6UXB8 463 aa20.24■□□□□ 0.83
LIG1-205ENST00000593425 GADL1Q6ZQY3 521 aa20.24■□□□□ 0.83
LIG1-205ENST00000593425 ERICH6Q7L0X2 663 aa20.24■□□□□ 0.83
LIG1-205ENST00000593425 FASTKD5Q7L8L6 764 aaKnown RBP20.24■□□□□ 0.83
LIG1-205ENST00000593425 NEUROD6Q96NK8 337 aa20.24■□□□□ 0.83
LIG1-205ENST00000593425 HMG20BQ9P0W2 317 aa20.24■□□□□ 0.83
LIG1-205ENST00000593425 GPR75-ASB3A0A0A6YYF3 556 aa20.23■□□□□ 0.83
LIG1-205ENST00000593425 GABRQQ9UN88 632 aa20.23■□□□□ 0.83
LIG1-205ENST00000593425 LOC285556D6RIA3 1793 aa20.22■□□□□ 0.83
LIG1-205ENST00000593425 MAST2Q6P0Q8 1798 aa20.22■□□□□ 0.83
LIG1-205ENST00000593425 FAM196BA6NMK8 535 aa20.22■□□□□ 0.83
LIG1-205ENST00000593425 CTNND1O60716 968 aaKnown RBP20.22■□□□□ 0.83
LIG1-205ENST00000593425 TRIM27P14373 513 aa20.22■□□□□ 0.83
LIG1-205ENST00000593425 FCGRTP55899 365 aa20.22■□□□□ 0.83
LIG1-205ENST00000593425 COLQQ9Y215 455 aaPredicted RBP20.22■□□□□ 0.83
LIG1-205ENST00000593425 SIPA1L1O43166 1804 aa20.21■□□□□ 0.83
LIG1-205ENST00000593425 PNMA6EA0A0J9YXQ4 647 aa20.21■□□□□ 0.83
LIG1-205ENST00000593425 TRIM75PA6NK02 468 aa20.21■□□□□ 0.83
LIG1-205ENST00000593425 H0YGN5 161 aa20.21■□□□□ 0.83
LIG1-205ENST00000593425 CCL5P13501 91 aa20.21■□□□□ 0.83
LIG1-205ENST00000593425 FXR1P51114 621 aaKnown RBP eCLIP20.21■□□□□ 0.83
LIG1-205ENST00000593425 TBC1D9Q6ZT07 1266 aa20.21■□□□□ 0.83
LIG1-205ENST00000593425 NSUN4Q96CB9 384 aaKnown RBP20.21■□□□□ 0.83
LIG1-205ENST00000593425 SLC45A1Q9Y2W3 748 aa20.21■□□□□ 0.83
LIG1-205ENST00000593425 COL2A1P02458 1487 aaPredicted RBP20.2■□□□□ 0.82
LIG1-205ENST00000593425 ARID4AP29374 1257 aaPredicted RBP20.2■□□□□ 0.82
LIG1-205ENST00000593425 SPATA5Q8NB90 893 aa20.2■□□□□ 0.82
LIG1-205ENST00000593425 TBC1D12O60347 775 aa20.19■□□□□ 0.82
LIG1-205ENST00000593425 NPM3O75607 178 aaKnown RBP20.19■□□□□ 0.82
LIG1-205ENST00000593425 MCAMP43121 646 aa20.19■□□□□ 0.82
LIG1-205ENST00000593425 GJA8P48165 433 aa20.19■□□□□ 0.82
LIG1-205ENST00000593425 RNF208Q9H0X6 261 aa20.19■□□□□ 0.82
LIG1-205ENST00000593425 BIN2Q9UBW5 565 aaPredicted RBP20.19■□□□□ 0.82
LIG1-205ENST00000593425 CDK5RAP2Q96SN8 1893 aa20.19■□□□□ 0.82
LIG1-205ENST00000593425 CCER2I3L3R5 266 aa20.18■□□□□ 0.82
LIG1-205ENST00000593425 BCAR3O75815 825 aa20.18■□□□□ 0.82
LIG1-205ENST00000593425 GNAI2P04899 355 aa20.18■□□□□ 0.82
LIG1-205ENST00000593425 GJB1P08034 283 aa20.18■□□□□ 0.82
LIG1-205ENST00000593425 UBXN2AP68543 259 aa20.18■□□□□ 0.82
LIG1-205ENST00000593425 TREML2Q5T2D2 321 aa20.18■□□□□ 0.82
LIG1-205ENST00000593425 GORABQ5T7V8 394 aa20.18■□□□□ 0.82
LIG1-205ENST00000593425 ATF7IPQ6VMQ6 1270 aa20.18■□□□□ 0.82
LIG1-205ENST00000593425 SLAIN1Q8ND83 568 aa20.18■□□□□ 0.82
LIG1-205ENST00000593425 NKX2-3Q8TAU0 364 aa20.18■□□□□ 0.82
LIG1-205ENST00000593425 SMCR8Q8TEV9 937 aaPredicted RBP20.18■□□□□ 0.82
LIG1-205ENST00000593425 OSBPL5Q9H0X9 879 aaPredicted RBP20.18■□□□□ 0.82
LIG1-205ENST00000593425 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.18■□□□□ 0.82
LIG1-205ENST00000593425 AGTPBP1Q9UPW5 1226 aa20.18■□□□□ 0.82
LIG1-205ENST00000593425 LDHCP07864 332 aa20.17■□□□□ 0.82
LIG1-205ENST00000593425 FLT3LGP49771 235 aa20.17■□□□□ 0.82
LIG1-205ENST00000593425 GSTO1P78417 241 aa20.17■□□□□ 0.82
LIG1-205ENST00000593425 RRP1BQ14684 758 aaKnown RBP20.17■□□□□ 0.82
LIG1-205ENST00000593425 UBE2Q1Q7Z7E8 422 aa20.17■□□□□ 0.82
LIG1-205ENST00000593425 FRAT1Q92837 279 aaPredicted RBP20.17■□□□□ 0.82
LIG1-205ENST00000593425 CLUAP1Q96AJ1 413 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms