RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 A0A0D9SFI3 127 aa11.31□□□□□ -0.6
LIG3-216ENST00000593099 EPB41L2O43491 1005 aaKnown RBP11.31□□□□□ -0.6
LIG3-216ENST00000593099 SMC2O95347 1197 aa11.31□□□□□ -0.6
LIG3-216ENST00000593099 STYK1Q6J9G0 422 aa11.31□□□□□ -0.6
LIG3-216ENST00000593099 CCDC17Q96LX7 622 aa11.31□□□□□ -0.6
LIG3-216ENST00000593099 CSRNP1Q96S65 589 aa11.31□□□□□ -0.6
LIG3-216ENST00000593099 ATP6V0A2Q9Y487 856 aa11.31□□□□□ -0.6
LIG3-216ENST00000593099 KDM6AO15550 1401 aaPredicted RBP11.31□□□□□ -0.6
LIG3-216ENST00000593099 ECM2O94769 699 aaPredicted RBP11.31□□□□□ -0.6
LIG3-216ENST00000593099 RPS6KB1P23443 525 aa11.31□□□□□ -0.6
LIG3-216ENST00000593099 FOXO4P98177 505 aa11.31□□□□□ -0.6
LIG3-216ENST00000593099 NFKBIBQ15653 356 aa11.31□□□□□ -0.6
LIG3-216ENST00000593099 SMCR8Q8TEV9 937 aaPredicted RBP11.31□□□□□ -0.6
LIG3-216ENST00000593099 TRAK2O60296 914 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 RXRAP19793 462 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 UBA7P41226 1012 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 PABPC4Q13310 644 aaKnown RBP eCLIP11.3□□□□□ -0.61e-8■■□□□ 11.9
LIG3-216ENST00000593099 PDIA6Q15084 440 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 ZSCAN16Q9H4T2 348 aaPredicted RBP11.3□□□□□ -0.6
LIG3-216ENST00000593099 CLIP2Q9UDT6 1046 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 DPEP1P16444 411 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 DHX8Q14562 1220 aaKnown RBP11.3□□□□□ -0.6
LIG3-216ENST00000593099 C8orf34Q49A92 452 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 TAF3Q5VWG9 929 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 PI16Q6UXB8 463 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 CALML4Q96GE6 196 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 SEC62Q99442 399 aaKnown RBP11.3□□□□□ -0.6
LIG3-216ENST00000593099 SNAP23O00161 211 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 PPP2R5BQ15173 497 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 FILIP1LQ4L180 1135 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 ZMYM1Q5SVZ6 1142 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 BIN2Q9UBW5 565 aaPredicted RBP11.3□□□□□ -0.6
LIG3-216ENST00000593099 ADD2P35612 726 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 DIXDC1Q155Q3 683 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 TMED8Q6PL24 325 aaPredicted RBP11.3□□□□□ -0.6
LIG3-216ENST00000593099 POTEAQ6S8J7 498 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 ARMC9Q7Z3E5 817 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 ERMNQ8TAM6 284 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 CHURC1Q8WUH1 139 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 DHX36Q9H2U1 1008 aaKnown RBP11.3□□□□□ -0.6
LIG3-216ENST00000593099 OSBPL3Q9H4L5 887 aa11.3□□□□□ -0.6
LIG3-216ENST00000593099 PXDNQ92626 1479 aa11.29□□□□□ -0.6
LIG3-216ENST00000593099 HSPD1P10809 573 aaKnown RBP11.29□□□□□ -0.6
LIG3-216ENST00000593099 RABL6Q3YEC7 729 aaPredicted RBP11.29□□□□□ -0.6
LIG3-216ENST00000593099 FAM47AQ5JRC9 791 aa11.29□□□□□ -0.6
LIG3-216ENST00000593099 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.29□□□□□ -0.6
LIG3-216ENST00000593099 LZTS2Q9BRK4 669 aa11.29□□□□□ -0.6
LIG3-216ENST00000593099 ANTXR1Q9H6X2 564 aa11.29□□□□□ -0.6
LIG3-216ENST00000593099 CAMTA1Q9Y6Y1 1673 aa11.29□□□□□ -0.6
LIG3-216ENST00000593099 OFD1O75665 1012 aa11.29□□□□□ -0.6
LIG3-216ENST00000593099 PCP11498 1178 aaKnown RBP11.29□□□□□ -0.6
LIG3-216ENST00000593099 MATR3P43243 847 aaKnown RBP eCLIP11.29□□□□□ -0.6
LIG3-216ENST00000593099 CFAP100Q494V2 611 aa11.29□□□□□ -0.6
LIG3-216ENST00000593099 SIRT2Q8IXJ6 389 aa11.29□□□□□ -0.6
LIG3-216ENST00000593099 GLT8D2Q9H1C3 349 aa11.29□□□□□ -0.6
LIG3-216ENST00000593099 SWAP70Q9UH65 585 aa11.29□□□□□ -0.6
LIG3-216ENST00000593099 SNX14Q9Y5W7 946 aa11.29□□□□□ -0.6
LIG3-216ENST00000593099 ABCB5Q2M3G0 1257 aa11.29□□□□□ -0.6
LIG3-216ENST00000593099 FGAP02671 866 aa11.28□□□□□ -0.6
LIG3-216ENST00000593099 MECOMQ03112 1051 aa11.28□□□□□ -0.6
LIG3-216ENST00000593099 ICA1Q05084 483 aa11.28□□□□□ -0.6
LIG3-216ENST00000593099 CPXCR1Q8N123 301 aa11.28□□□□□ -0.6
LIG3-216ENST00000593099 NUP62CLQ9H1M0 184 aa11.28□□□□□ -0.6
LIG3-216ENST00000593099 ZNRF3Q9ULT6 936 aa11.28□□□□□ -0.6
LIG3-216ENST00000593099 IQCA1LA6NCM1 817 aa11.28□□□□□ -0.6
LIG3-216ENST00000593099 E7EWF7 191 aa11.28□□□□□ -0.6
LIG3-216ENST00000593099 GSPT1P15170 499 aaKnown RBP11.28□□□□□ -0.6
LIG3-216ENST00000593099 DYNLL1P63167 89 aaKnown RBP11.28□□□□□ -0.6
LIG3-216ENST00000593099 OTUD7BQ6GQQ9 843 aa11.28□□□□□ -0.6
LIG3-216ENST00000593099 TBC1D16Q8TBP0 767 aa11.28□□□□□ -0.6
LIG3-216ENST00000593099 TFIP11Q9UBB9 837 aaKnown RBP11.28□□□□□ -0.6
LIG3-216ENST00000593099 KIF20BQ96Q89 1820 aa11.28□□□□□ -0.6
LIG3-216ENST00000593099 PTPDC1A2A3K4 754 aa11.28□□□□□ -0.6
LIG3-216ENST00000593099 CPA1P15085 419 aa11.28□□□□□ -0.6
LIG3-216ENST00000593099 VTI1AQ96AJ9 217 aa11.28□□□□□ -0.6
LIG3-216ENST00000593099 CSF1RP07333 972 aa11.27□□□□□ -0.6
LIG3-216ENST00000593099 CCDC192P0DO97 292 aa11.27□□□□□ -0.6
LIG3-216ENST00000593099 IBSPP21815 317 aaPredicted RBP11.27□□□□□ -0.6
LIG3-216ENST00000593099 TRMT1LQ7Z2T5 733 aaKnown RBP11.27□□□□□ -0.6
LIG3-216ENST00000593099 PYM1Q9BRP8 204 aaKnown RBP11.27□□□□□ -0.6
LIG3-216ENST00000593099 SERPINB13Q9UIV8 391 aa11.27□□□□□ -0.6
LIG3-216ENST00000593099 TBC1D10BQ4KMP7 808 aaPredicted RBP11.27□□□□□ -0.61
LIG3-216ENST00000593099 DHX37Q8IY37 1157 aaKnown RBP11.27□□□□□ -0.61
LIG3-216ENST00000593099 CKAP2LQ8IYA6 745 aa11.27□□□□□ -0.61
LIG3-216ENST00000593099 CRKP46108 304 aa11.27□□□□□ -0.61
LIG3-216ENST00000593099 PIH1D3Q9NQM4 214 aaKnown RBP11.27□□□□□ -0.61
LIG3-216ENST00000593099 PI4KBQ9UBF8 816 aa11.27□□□□□ -0.61
LIG3-216ENST00000593099 RIPOR2Q9Y4F9 1068 aa11.27□□□□□ -0.61
LIG3-216ENST00000593099 MED1Q15648 1581 aaPredicted RBP11.27□□□□□ -0.61
LIG3-216ENST00000593099 MAP2P11137 1827 aaKnown RBP11.27□□□□□ -0.61
LIG3-216ENST00000593099 KRT2P35908 639 aa11.27□□□□□ -0.61
LIG3-216ENST00000593099 MCAMP43121 646 aa11.27□□□□□ -0.61
LIG3-216ENST00000593099 FMN2Q9NZ56 1722 aa11.27□□□□□ -0.61
LIG3-216ENST00000593099 TRIM75PA6NK02 468 aa11.26□□□□□ -0.61
LIG3-216ENST00000593099 DEXIO95424 95 aa11.26□□□□□ -0.61
LIG3-216ENST00000593099 IREB2P48200 963 aaKnown RBP11.26□□□□□ -0.61
LIG3-216ENST00000593099 TGFB2P61812 414 aa11.26□□□□□ -0.61
LIG3-216ENST00000593099 AMPD3Q01432 767 aa11.26□□□□□ -0.61
LIG3-216ENST00000593099 SNX21Q969T3 373 aa11.26□□□□□ -0.61
LIG3-216ENST00000593099 PSMD1Q99460 953 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms