RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 AFG3L2Q9Y4W6 797 aa13.91□□□□□ -0.18
ZNF540-209ENST00000590588 MYBBP1AQ9BQG0 1328 aaKnown RBP13.9□□□□□ -0.18
ZNF540-209ENST00000590588 ZNF316A6NFI3 1004 aaPredicted RBP13.9□□□□□ -0.18
ZNF540-209ENST00000590588 MDM2Q00987 491 aaPredicted RBP13.9□□□□□ -0.18
ZNF540-209ENST00000590588 TWISTNBQ3B726 338 aaPredicted RBP13.9□□□□□ -0.18
ZNF540-209ENST00000590588 EPHA10Q5JZY3 1008 aa13.9□□□□□ -0.18
ZNF540-209ENST00000590588 ANKRD13CQ8N6S4 541 aa13.9□□□□□ -0.18
ZNF540-209ENST00000590588 A0A1B0GUL6 1792 aa13.9□□□□□ -0.18
ZNF540-209ENST00000590588 MROH5Q6ZUA9 1318 aa13.9□□□□□ -0.19
ZNF540-209ENST00000590588 PTPRAP18433 802 aa13.89□□□□□ -0.19
ZNF540-209ENST00000590588 COL9A1P20849 921 aa13.89□□□□□ -0.19
ZNF540-209ENST00000590588 FAM110CQ1W6H9 321 aa13.89□□□□□ -0.19
ZNF540-209ENST00000590588 SCYL3Q8IZE3 742 aa13.89□□□□□ -0.19
ZNF540-209ENST00000590588 LAMA2P24043 3122 aaKnown RBP13.89□□□□□ -0.19
ZNF540-209ENST00000590588 PHF20L1A8MW92 1017 aa13.88□□□□□ -0.19
ZNF540-209ENST00000590588 CDC42EP5Q6NZY7 148 aa13.88□□□□□ -0.19
ZNF540-209ENST00000590588 MAFAQ8NHW3 353 aaPredicted RBP13.88□□□□□ -0.19
ZNF540-209ENST00000590588 PUS3Q9BZE2 481 aaKnown RBP13.88□□□□□ -0.19
ZNF540-209ENST00000590588 GJD2Q9UKL4 321 aa13.88□□□□□ -0.19
ZNF540-209ENST00000590588 PNMA3Q9UL41 463 aa13.88□□□□□ -0.19
ZNF540-209ENST00000590588 PFASO15067 1338 aa13.88□□□□□ -0.19
ZNF540-209ENST00000590588 NFIAQ12857 509 aa13.87□□□□□ -0.19
ZNF540-209ENST00000590588 TRIM32Q13049 653 aa13.87□□□□□ -0.19
ZNF540-209ENST00000590588 BEND3Q5T5X7 828 aa13.87□□□□□ -0.19
ZNF540-209ENST00000590588 TSR2Q969E8 191 aaKnown RBP13.87□□□□□ -0.19
ZNF540-209ENST00000590588 CDX2Q99626 313 aaPredicted RBP13.87□□□□□ -0.19
ZNF540-209ENST00000590588 LBHD1Q9BQE6 289 aaPredicted RBP13.87□□□□□ -0.19
ZNF540-209ENST00000590588 AGTPBP1Q9UPW5 1226 aa13.87□□□□□ -0.19
ZNF540-209ENST00000590588 MUC3AQ02505 3323 aa13.87□□□□□ -0.19
ZNF540-209ENST00000590588 GRM8O00222 908 aa13.86□□□□□ -0.19
ZNF540-209ENST00000590588 COL6A1P12109 1028 aa13.86□□□□□ -0.19
ZNF540-209ENST00000590588 GCLCP48506 637 aaPredicted RBP13.86□□□□□ -0.19
ZNF540-209ENST00000590588 C9orf78Q9NZ63 289 aaPredicted RBP13.86□□□□□ -0.19
ZNF540-209ENST00000590588 FAM198AQ9UFP1 575 aa13.86□□□□□ -0.19
ZNF540-209ENST00000590588 LRRFIP2Q9Y608 721 aaKnown RBP13.86□□□□□ -0.19
ZNF540-209ENST00000590588 PRUNE2Q8WUY3 3088 aa13.86□□□□□ -0.19
ZNF540-209ENST00000590588 DOCK3Q8IZD9 2030 aa13.85□□□□□ -0.19
ZNF540-209ENST00000590588 TRIM75PA6NK02 468 aa13.85□□□□□ -0.19
ZNF540-209ENST00000590588 HOXD11P31277 338 aaPredicted RBP13.85□□□□□ -0.19
ZNF540-209ENST00000590588 LRRC26Q2I0M4 334 aa13.85□□□□□ -0.19
ZNF540-209ENST00000590588 WDR66Q8TBY9 1149 aa13.85□□□□□ -0.19
ZNF540-209ENST00000590588 SEMA6BQ9H3T3 888 aa13.85□□□□□ -0.19
ZNF540-209ENST00000590588 USP40Q9NVE5 1235 aa13.85□□□□□ -0.19
ZNF540-209ENST00000590588 COL2A1P02458 1487 aaPredicted RBP13.85□□□□□ -0.19
ZNF540-209ENST00000590588 CTNND1O60716 968 aaKnown RBP13.84□□□□□ -0.19
ZNF540-209ENST00000590588 PDE8BO95263 885 aa13.84□□□□□ -0.19
ZNF540-209ENST00000590588 MAP3K10Q02779 954 aa13.84□□□□□ -0.19
ZNF540-209ENST00000590588 METTL24Q5JXM2 366 aa13.84□□□□□ -0.19
ZNF540-209ENST00000590588 MAP3K21Q5TCX8 1036 aa13.84□□□□□ -0.19
ZNF540-209ENST00000590588 DAGLAQ9Y4D2 1042 aa13.84□□□□□ -0.19
ZNF540-209ENST00000590588 DDX60LQ5H9U9 1706 aaKnown RBP13.84□□□□□ -0.19
ZNF540-209ENST00000590588 AK9Q5TCS8 1911 aa13.84□□□□□ -0.19
ZNF540-209ENST00000590588 F6X3S4 739 aa13.83□□□□□ -0.2
ZNF540-209ENST00000590588 PRKAR2AP13861 404 aaKnown RBP13.83□□□□□ -0.2
ZNF540-209ENST00000590588 PABPC4Q13310 644 aaKnown RBP eCLIP13.83□□□□□ -0.2
ZNF540-209ENST00000590588 TREML2Q5T2D2 321 aa13.83□□□□□ -0.2
ZNF540-209ENST00000590588 ZFPM1Q8IX07 1006 aa13.83□□□□□ -0.2
ZNF540-209ENST00000590588 PROCA1Q8NCQ7 364 aaPredicted RBP13.83□□□□□ -0.2
ZNF540-209ENST00000590588 TRIB2Q92519 343 aa13.83□□□□□ -0.2
ZNF540-209ENST00000590588 CDH23Q9H251 3354 aa13.82□□□□□ -0.2
ZNF540-209ENST00000590588 TNFRSF10AO00220 468 aa13.82□□□□□ -0.2
ZNF540-209ENST00000590588 ENTPD3O75355 529 aa13.82□□□□□ -0.2
ZNF540-209ENST00000590588 IFIT1P09914 478 aaKnown RBP13.82□□□□□ -0.2
ZNF540-209ENST00000590588 XRCC5P13010 732 aaKnown RBP13.82□□□□□ -0.2
ZNF540-209ENST00000590588 CYP2B6P20813 491 aa13.82□□□□□ -0.2
ZNF540-209ENST00000590588 DIXDC1Q155Q3 683 aa13.82□□□□□ -0.2
ZNF540-209ENST00000590588 LRRC24Q50LG9 513 aa13.82□□□□□ -0.2
ZNF540-209ENST00000590588 TRMT44Q8IYL2 757 aaKnown RBP13.82□□□□□ -0.2
ZNF540-209ENST00000590588 SPINK5Q9NQ38 1064 aaPredicted RBP13.82□□□□□ -0.2
ZNF540-209ENST00000590588 ATRNL1Q5VV63 1379 aa13.82□□□□□ -0.2
ZNF540-209ENST00000590588 LHX8Q68G74 356 aa13.81□□□□□ -0.2
ZNF540-209ENST00000590588 ZSCAN29Q8IWY8 852 aaPredicted RBP13.81□□□□□ -0.2
ZNF540-209ENST00000590588 VGLL2Q8N8G2 317 aa13.81□□□□□ -0.2
ZNF540-209ENST00000590588 MYLIPQ8WY64 445 aa13.81□□□□□ -0.2
ZNF540-209ENST00000590588 NUDT12Q9BQG2 462 aa13.81□□□□□ -0.2
ZNF540-209ENST00000590588 IDI2Q9BXS1 227 aa13.81□□□□□ -0.2
ZNF540-209ENST00000590588 PRKAG2Q9UGJ0 569 aa13.81□□□□□ -0.2
ZNF540-209ENST00000590588 KIF16BQ96L93 1317 aa13.81□□□□□ -0.2
ZNF540-209ENST00000590588 RGS3P49796 1198 aa13.8□□□□□ -0.2
ZNF540-209ENST00000590588 CACNB2Q08289 660 aaPredicted RBP13.8□□□□□ -0.2
ZNF540-209ENST00000590588 TJAP1Q5JTD0 557 aa13.8□□□□□ -0.2
ZNF540-209ENST00000590588 SUCLG2Q96I99 432 aa13.8□□□□□ -0.2
ZNF540-209ENST00000590588 SENP6Q9GZR1 1112 aaPredicted RBP13.8□□□□□ -0.2
ZNF540-209ENST00000590588 VAMP4O75379 141 aa13.79□□□□□ -0.2
ZNF540-209ENST00000590588 ALDH1L1O75891 902 aa13.79□□□□□ -0.2
ZNF540-209ENST00000590588 LDHBP07195 334 aaKnown RBP13.79□□□□□ -0.2
ZNF540-209ENST00000590588 FOSL2P15408 326 aa13.79□□□□□ -0.2
ZNF540-209ENST00000590588 SPP2Q13103 211 aa13.79□□□□□ -0.2
ZNF540-209ENST00000590588 PUM3Q15397 648 aaKnown RBP13.79□□□□□ -0.2
ZNF540-209ENST00000590588 SOCS4Q8WXH5 440 aa13.79□□□□□ -0.2
ZNF540-209ENST00000590588 KAZALD1Q96I82 304 aa13.79□□□□□ -0.2
ZNF540-209ENST00000590588 TBC1D2Q9BYX2 928 aa13.79□□□□□ -0.2
ZNF540-209ENST00000590588 ASCC2Q9H1I8 757 aaPredicted RBP13.79□□□□□ -0.2
ZNF540-209ENST00000590588 MORF4L1Q9UBU8 362 aa13.79□□□□□ -0.2
ZNF540-209ENST00000590588 ZKSCAN1P17029 563 aaPredicted RBP13.78□□□□□ -0.2
ZNF540-209ENST00000590588 FGFR2P21802 821 aa13.78□□□□□ -0.2
ZNF540-209ENST00000590588 PRDX5P30044 214 aa13.78□□□□□ -0.2
ZNF540-209ENST00000590588 PLA2G5P39877 138 aa13.78□□□□□ -0.2
ZNF540-209ENST00000590588 SMAD3P84022 425 aaKnown RBP13.78□□□□□ -0.2
ZNF540-209ENST00000590588 SHHQ15465 462 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms