RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 MS4A4AQ96JQ5 239 aa12.87□□□□□ -0.35
LIG3-212ENST00000590181 ZFYVE28Q9HCC9 887 aa12.87□□□□□ -0.35
LIG3-212ENST00000590181 DAGLAQ9Y4D2 1042 aa12.87□□□□□ -0.35
LIG3-212ENST00000590181 FPGT-TNNI3KV9GXZ4 949 aa12.87□□□□□ -0.35
LIG3-212ENST00000590181 DOCK2Q92608 1830 aa12.87□□□□□ -0.35
LIG3-212ENST00000590181 AK9Q5TCS8 1911 aa12.86□□□□□ -0.35
LIG3-212ENST00000590181 RAB11FIP3O75154 756 aa12.86□□□□□ -0.35
LIG3-212ENST00000590181 PRDX5P30044 214 aa12.86□□□□□ -0.35
LIG3-212ENST00000590181 GTF2A2P52657 109 aa12.86□□□□□ -0.35
LIG3-212ENST00000590181 CEP85Q6P2H3 762 aa12.86□□□□□ -0.35
LIG3-212ENST00000590181 FAM43AQ8N2R8 423 aa12.86□□□□□ -0.35
LIG3-212ENST00000590181 OTUD5Q96G74 571 aa12.86□□□□□ -0.35
LIG3-212ENST00000590181 ZCCHC17Q9NP64 241 aaKnown RBP12.86□□□□□ -0.35
LIG3-212ENST00000590181 ZBTB40Q9NUA8 1239 aa12.86□□□□□ -0.35
LIG3-212ENST00000590181 USP40Q9NVE5 1235 aa12.86□□□□□ -0.35
LIG3-212ENST00000590181 ABCF2Q9UG63 623 aa12.86□□□□□ -0.35
LIG3-212ENST00000590181 GPR75-ASB3A0A0A6YYF3 556 aa12.85□□□□□ -0.35
LIG3-212ENST00000590181 BAG3O95817 575 aa12.85□□□□□ -0.35
LIG3-212ENST00000590181 ADORA1P30542 326 aa12.85□□□□□ -0.35
LIG3-212ENST00000590181 GRIK5Q16478 980 aa12.85□□□□□ -0.35
LIG3-212ENST00000590181 TTC39AQ5SRH9 613 aa12.85□□□□□ -0.35
LIG3-212ENST00000590181 CDC42EP5Q6NZY7 148 aa12.85□□□□□ -0.35
LIG3-212ENST00000590181 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.85□□□□□ -0.35
LIG3-212ENST00000590181 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.85□□□□□ -0.35
LIG3-212ENST00000590181 SH3TC2Q8TF17 1288 aa12.85□□□□□ -0.35
LIG3-212ENST00000590181 NOL10Q9BSC4 688 aaKnown RBP12.85□□□□□ -0.35
LIG3-212ENST00000590181 ZNF341Q9BYN7 854 aa12.85□□□□□ -0.35
LIG3-212ENST00000590181 ARHGAP39Q9C0H5 1083 aa12.85□□□□□ -0.35
LIG3-212ENST00000590181 TMEM39BQ9GZU3 492 aa12.85□□□□□ -0.35
LIG3-212ENST00000590181 HMG20BQ9P0W2 317 aa12.85□□□□□ -0.35
LIG3-212ENST00000590181 TNNQ9UQP3 1299 aa12.85□□□□□ -0.35
LIG3-212ENST00000590181 H0YGN5 161 aa12.84□□□□□ -0.35
LIG3-212ENST00000590181 KIF22Q14807 665 aa12.84□□□□□ -0.35
LIG3-212ENST00000590181 ERO1BQ86YB8 467 aa12.84□□□□□ -0.35
LIG3-212ENST00000590181 PANK1Q8TE04 598 aa12.84□□□□□ -0.35
LIG3-212ENST00000590181 KIF1BPQ96EK5 621 aa12.84□□□□□ -0.35
LIG3-212ENST00000590181 LRP2BPQ9P2M1 347 aa12.84□□□□□ -0.35
LIG3-212ENST00000590181 ZNF112Q9UJU3 913 aa12.84□□□□□ -0.35
LIG3-212ENST00000590181 MROH7-TTC4A0A0A0MT08 1334 aa12.84□□□□□ -0.35
LIG3-212ENST00000590181 SPDYE5A6NIY4 337 aa12.83□□□□□ -0.36
LIG3-212ENST00000590181 TBC1D12O60347 775 aa12.83□□□□□ -0.36
LIG3-212ENST00000590181 MAP3K10Q02779 954 aa12.83□□□□□ -0.36
LIG3-212ENST00000590181 MECOMQ03112 1051 aa12.83□□□□□ -0.36
LIG3-212ENST00000590181 PPATQ06203 517 aa12.83□□□□□ -0.36
LIG3-212ENST00000590181 TTF1Q15361 905 aaPredicted RBP12.83□□□□□ -0.36
LIG3-212ENST00000590181 DIXDC1Q155Q3 683 aa12.83□□□□□ -0.36
LIG3-212ENST00000590181 CHRDL2Q6WN34 429 aa12.83□□□□□ -0.36
LIG3-212ENST00000590181 CLASRPQ8N2M8 674 aaKnown RBP12.83□□□□□ -0.36
LIG3-212ENST00000590181 NSUN4Q96CB9 384 aaKnown RBP12.83□□□□□ -0.36
LIG3-212ENST00000590181 CETPP11597 493 aa12.82□□□□□ -0.36
LIG3-212ENST00000590181 LACTBP83111 547 aaPredicted RBP12.82□□□□□ -0.36
LIG3-212ENST00000590181 AAMPQ13685 434 aa12.82□□□□□ -0.36
LIG3-212ENST00000590181 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.82□□□□□ -0.36
LIG3-212ENST00000590181 SHISA4Q96DD7 197 aa12.82□□□□□ -0.36
LIG3-212ENST00000590181 TBC1D2Q9BYX2 928 aa12.82□□□□□ -0.36
LIG3-212ENST00000590181 DHX36Q9H2U1 1008 aaKnown RBP12.82□□□□□ -0.36
LIG3-212ENST00000590181 TAOK2Q9UL54 1235 aa12.82□□□□□ -0.36
LIG3-212ENST00000590181 SNCAIPQ9Y6H5 919 aa12.82□□□□□ -0.36
LIG3-212ENST00000590181 COL2A1P02458 1487 aaPredicted RBP12.82□□□□□ -0.36
LIG3-212ENST00000590181 PTPRFP10586 1907 aa12.82□□□□□ -0.36
LIG3-212ENST00000590181 ALPK3Q96L96 1907 aa12.82□□□□□ -0.36
LIG3-212ENST00000590181 TLR2O60603 784 aa12.81□□□□□ -0.36
LIG3-212ENST00000590181 ECM2O94769 699 aaPredicted RBP12.81□□□□□ -0.36
LIG3-212ENST00000590181 MCAMP43121 646 aa12.81□□□□□ -0.36
LIG3-212ENST00000590181 CACNB3P54284 484 aa12.81□□□□□ -0.36
LIG3-212ENST00000590181 PPP4CP60510 307 aa12.81□□□□□ -0.36
LIG3-212ENST00000590181 PPIL2Q13356 520 aa12.81□□□□□ -0.36
LIG3-212ENST00000590181 NOL9Q5SY16 702 aaKnown RBP12.81□□□□□ -0.36
LIG3-212ENST00000590181 WRNIP1Q96S55 665 aa12.81□□□□□ -0.36
LIG3-212ENST00000590181 RAI14Q9P0K7 980 aa12.81□□□□□ -0.36
LIG3-212ENST00000590181 CUL9Q8IWT3 2517 aa12.8□□□□□ -0.36
LIG3-212ENST00000590181 BTBD19C9JJ37 291 aa12.8□□□□□ -0.36
LIG3-212ENST00000590181 CTNND1O60716 968 aaKnown RBP12.8□□□□□ -0.36
LIG3-212ENST00000590181 MAP3K12Q12852 859 aa12.8□□□□□ -0.36
LIG3-212ENST00000590181 SNAPC2Q13487 334 aa12.8□□□□□ -0.36
LIG3-212ENST00000590181 NAA16Q6N069 864 aaPredicted RBP12.8□□□□□ -0.36
LIG3-212ENST00000590181 RHPN1Q8TCX5 695 aa12.8□□□□□ -0.36
LIG3-212ENST00000590181 DBNDD2Q9BQY9 259 aa12.8□□□□□ -0.36
LIG3-212ENST00000590181 C1orf115Q9H7X2 142 aa12.8□□□□□ -0.36
LIG3-212ENST00000590181 FAM198AQ9UFP1 575 aa12.8□□□□□ -0.36
LIG3-212ENST00000590181 COG6Q9Y2V7 657 aa12.8□□□□□ -0.36
LIG3-212ENST00000590181 DOCK1Q14185 1865 aa12.8□□□□□ -0.36
LIG3-212ENST00000590181 ATRNL1Q5VV63 1379 aa12.8□□□□□ -0.36
LIG3-212ENST00000590181 GNRH1P01148 92 aa12.79□□□□□ -0.36
LIG3-212ENST00000590181 BTDP43251 543 aa12.79□□□□□ -0.36
LIG3-212ENST00000590181 RGS3P49796 1198 aa12.79□□□□□ -0.36
LIG3-212ENST00000590181 PRMT2P55345 433 aa12.79□□□□□ -0.36
LIG3-212ENST00000590181 MTFR1Q15390 333 aa12.79□□□□□ -0.36
LIG3-212ENST00000590181 EAF2Q96CJ1 260 aaPredicted RBP12.79□□□□□ -0.36
LIG3-212ENST00000590181 GINM1Q9NU53 330 aa12.79□□□□□ -0.36
LIG3-212ENST00000590181 HERC5Q9UII4 1024 aaKnown RBP12.79□□□□□ -0.36
LIG3-212ENST00000590181 DBNLQ9UJU6 430 aaKnown RBP12.79□□□□□ -0.36
LIG3-212ENST00000590181 COL6A3P12111 3177 aa12.78□□□□□ -0.36
LIG3-212ENST00000590181 CXCL11O14625 94 aa12.78□□□□□ -0.36
LIG3-212ENST00000590181 IRF6O14896 467 aa12.78□□□□□ -0.36
LIG3-212ENST00000590181 IFIT2P09913 472 aaKnown RBP12.78□□□□□ -0.36
LIG3-212ENST00000590181 RHBDL3P58872 404 aa12.78□□□□□ -0.36
LIG3-212ENST00000590181 TCP10Q12799 353 aa12.78□□□□□ -0.36
LIG3-212ENST00000590181 AACSQ86V21 672 aa12.78□□□□□ -0.36
LIG3-212ENST00000590181 FOXP4Q8IVH2 680 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms