RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 KRT26Q7Z3Y9 468 aa16.31■□□□□ 0.2
VMP1-210ENST00000589823 ESYT1Q9BSJ8 1104 aa16.31■□□□□ 0.2
VMP1-210ENST00000589823 NACAP1Q9BZK3 213 aa16.31■□□□□ 0.2
VMP1-210ENST00000589823 DEFB129Q9H1M3 183 aa16.31■□□□□ 0.2
VMP1-210ENST00000589823 DDX4Q9NQI0 724 aaKnown RBP16.31■□□□□ 0.2
VMP1-210ENST00000589823 FAM198AQ9UFP1 575 aa16.31■□□□□ 0.2
VMP1-210ENST00000589823 SCAF8Q9UPN6 1271 aaKnown RBP16.31■□□□□ 0.2
VMP1-210ENST00000589823 MAP1SQ66K74 1059 aaPredicted RBP16.3■□□□□ 0.2
VMP1-210ENST00000589823 GIMAP6Q6P9H5 292 aa16.3■□□□□ 0.2
VMP1-210ENST00000589823 KIAA1211Q6ZU35 1233 aa16.3■□□□□ 0.2
VMP1-210ENST00000589823 USP48Q86UV5 1035 aa16.3■□□□□ 0.2
VMP1-210ENST00000589823 ZSCAN29Q8IWY8 852 aaPredicted RBP16.3■□□□□ 0.2
VMP1-210ENST00000589823 OSBPL5Q9H0X9 879 aaPredicted RBP16.3■□□□□ 0.2
VMP1-210ENST00000589823 CNTNAP1P78357 1384 aa16.29■□□□□ 0.2
VMP1-210ENST00000589823 GSG1L2A8MUP6 293 aa16.29■□□□□ 0.2
VMP1-210ENST00000589823 ADM5C9JUS6 153 aa16.29■□□□□ 0.2
VMP1-210ENST00000589823 HSPD1P10809 573 aaKnown RBP16.29■□□□□ 0.2
VMP1-210ENST00000589823 TDO2P48775 406 aa16.29■□□□□ 0.2
VMP1-210ENST00000589823 AMOTL1Q8IY63 956 aa16.29■□□□□ 0.2
VMP1-210ENST00000589823 GLIS2Q9BZE0 524 aaPredicted RBP16.29■□□□□ 0.2
VMP1-210ENST00000589823 TMEM39BQ9GZU3 492 aa16.29■□□□□ 0.2
VMP1-210ENST00000589823 DCP1AQ9NPI6 582 aaPredicted RBP16.29■□□□□ 0.2
VMP1-210ENST00000589823 MCM9Q9NXL9 1143 aa16.29■□□□□ 0.2
VMP1-210ENST00000589823 SAP30BPQ9UHR5 308 aaKnown RBP16.29■□□□□ 0.2
VMP1-210ENST00000589823 TOMM70O94826 608 aa16.28■□□□□ 0.2
VMP1-210ENST00000589823 POLR3DP05423 398 aaPredicted RBP16.28■□□□□ 0.2
VMP1-210ENST00000589823 VPS53Q5VIR6 699 aa16.28■□□□□ 0.2
VMP1-210ENST00000589823 IFNL3Q8IZI9 196 aa16.28■□□□□ 0.2
VMP1-210ENST00000589823 SMC1BQ8NDV3 1235 aa16.28■□□□□ 0.2
VMP1-210ENST00000589823 RBM46Q8TBY0 533 aaKnown RBP16.28■□□□□ 0.2
VMP1-210ENST00000589823 DSCC1Q9BVC3 393 aa16.28■□□□□ 0.2
VMP1-210ENST00000589823 NAPBQ9H115 298 aa16.28■□□□□ 0.2
VMP1-210ENST00000589823 IL25Q9H293 177 aa16.28■□□□□ 0.2
VMP1-210ENST00000589823 DHX36Q9H2U1 1008 aaKnown RBP16.28■□□□□ 0.2
VMP1-210ENST00000589823 EIF5BO60841 1220 aaKnown RBP16.27■□□□□ 0.2
VMP1-210ENST00000589823 HLA-DOAP06340 250 aa16.27■□□□□ 0.2
VMP1-210ENST00000589823 SUPT20HL1Q3ZLR7 823 aa16.27■□□□□ 0.2
VMP1-210ENST00000589823 TTC6Q86TZ1 520 aa16.27■□□□□ 0.2
VMP1-210ENST00000589823 ZFPM1Q8IX07 1006 aa16.27■□□□□ 0.2
VMP1-210ENST00000589823 HOOK2Q96ED9 719 aa16.27■□□□□ 0.2
VMP1-210ENST00000589823 EPB41L4AQ9HCS5 686 aaPredicted RBP16.27■□□□□ 0.2
VMP1-210ENST00000589823 ANO2Q9NQ90 1003 aa16.27■□□□□ 0.2
VMP1-210ENST00000589823 ARPP21Q9UBL0 812 aaPredicted RBP16.27■□□□□ 0.2
VMP1-210ENST00000589823 MKRN1Q9UHC7 482 aaKnown RBP16.27■□□□□ 0.2
VMP1-210ENST00000589823 COL2A1P02458 1487 aaPredicted RBP16.27■□□□□ 0.19
VMP1-210ENST00000589823 FOCADQ5VW36 1801 aa16.26■□□□□ 0.19
VMP1-210ENST00000589823 NF2P35240 595 aa16.26■□□□□ 0.19
VMP1-210ENST00000589823 ALX1Q15699 326 aa16.26■□□□□ 0.19
VMP1-210ENST00000589823 CDCA5Q96FF9 252 aa16.26■□□□□ 0.19
VMP1-210ENST00000589823 CSRNP1Q96S65 589 aa16.26■□□□□ 0.19
VMP1-210ENST00000589823 PALD1Q9ULE6 856 aa16.26■□□□□ 0.19
VMP1-210ENST00000589823 NAV1Q8NEY1 1877 aa16.25■□□□□ 0.19
VMP1-210ENST00000589823 CDK5RAP2Q96SN8 1893 aa16.25■□□□□ 0.19
VMP1-210ENST00000589823 DDTLA6NHG4 134 aaPredicted RBP16.25■□□□□ 0.19
VMP1-210ENST00000589823 USP17L12C9JPN9 530 aa16.25■□□□□ 0.19
VMP1-210ENST00000589823 USP17L21D6R901 530 aa16.25■□□□□ 0.19
VMP1-210ENST00000589823 REC8O95072 547 aa16.25■□□□□ 0.19
VMP1-210ENST00000589823 SLC4A8Q2Y0W8 1093 aa16.25■□□□□ 0.19
VMP1-210ENST00000589823 PRAMEF18Q5VWM3 479 aa16.25■□□□□ 0.19
VMP1-210ENST00000589823 SH3BP5LQ7L8J4 393 aa16.25■□□□□ 0.19
VMP1-210ENST00000589823 TEPSINQ96N21 525 aa16.25■□□□□ 0.19
VMP1-210ENST00000589823 TRIM34Q9BYJ4 488 aa16.25■□□□□ 0.19
VMP1-210ENST00000589823 PI4KBQ9UBF8 816 aa16.25■□□□□ 0.19
VMP1-210ENST00000589823 CTNNA3Q9UI47 895 aa16.25■□□□□ 0.19
VMP1-210ENST00000589823 ATRNL1Q5VV63 1379 aa16.25■□□□□ 0.19
VMP1-210ENST00000589823 ZMYM6O95789 1325 aa16.24■□□□□ 0.19
VMP1-210ENST00000589823 TRAF5O00463 557 aa16.24■□□□□ 0.19
VMP1-210ENST00000589823 FOXP2O15409 715 aa16.24■□□□□ 0.19
VMP1-210ENST00000589823 FGAP02671 866 aa16.24■□□□□ 0.19
VMP1-210ENST00000589823 PTH1RQ03431 593 aa16.24■□□□□ 0.19
VMP1-210ENST00000589823 FSTL1Q12841 308 aa16.24■□□□□ 0.19
VMP1-210ENST00000589823 SBK1Q52WX2 424 aa16.24■□□□□ 0.19
VMP1-210ENST00000589823 NBPF12Q5TAG4 269 aaPredicted RBP16.24■□□□□ 0.19
VMP1-210ENST00000589823 CTR9Q6PD62 1173 aa16.24■□□□□ 0.19
VMP1-210ENST00000589823 U3KPZ7 1027 aaPredicted RBP16.24■□□□□ 0.19
VMP1-210ENST00000589823 POLR2AP24928 1970 aaKnown RBP16.24■□□□□ 0.19
VMP1-210ENST00000589823 MINDY4BA8MYZ0 360 aa16.23■□□□□ 0.19
VMP1-210ENST00000589823 DCAF15Q66K64 600 aa16.23■□□□□ 0.19
VMP1-210ENST00000589823 DLK2Q6UY11 383 aa16.23■□□□□ 0.19
VMP1-210ENST00000589823 CDAN1Q8IWY9 1227 aa16.23■□□□□ 0.19
VMP1-210ENST00000589823 CRACR2BQ8N4Y2 399 aaPredicted RBP16.23■□□□□ 0.19
VMP1-210ENST00000589823 LSG1Q9H089 658 aaKnown RBP16.23■□□□□ 0.19
VMP1-210ENST00000589823 ZNF408Q9H9D4 720 aa16.23■□□□□ 0.19
VMP1-210ENST00000589823 MYH1P12882 1939 aa16.22■□□□□ 0.19
VMP1-210ENST00000589823 ITGBL1O95965 494 aaPredicted RBP16.22■□□□□ 0.19
VMP1-210ENST00000589823 SLC3A2P08195 630 aaKnown RBP16.22■□□□□ 0.19
VMP1-210ENST00000589823 CYP2D6P10635 497 aa16.22■□□□□ 0.19
VMP1-210ENST00000589823 PLCD1P51178 756 aa16.22■□□□□ 0.19
VMP1-210ENST00000589823 C8orf34Q49A92 452 aa16.22■□□□□ 0.19
VMP1-210ENST00000589823 C12orf60Q5U649 245 aa16.22■□□□□ 0.19
VMP1-210ENST00000589823 FOXP4Q8IVH2 680 aaPredicted RBP16.22■□□□□ 0.19
VMP1-210ENST00000589823 MAP4K1Q92918 833 aa16.22■□□□□ 0.19
VMP1-210ENST00000589823 DDX60LQ5H9U9 1706 aaKnown RBP16.22■□□□□ 0.19
VMP1-210ENST00000589823 CYP2D7A0A087X1C5 515 aa16.21■□□□□ 0.19
VMP1-210ENST00000589823 ZNF213O14771 459 aa16.21■□□□□ 0.19
VMP1-210ENST00000589823 PPARAQ07869 468 aa16.21■□□□□ 0.19
VMP1-210ENST00000589823 IMMTQ16891 758 aaKnown RBP16.21■□□□□ 0.19
VMP1-210ENST00000589823 EHD4Q9H223 541 aa16.21■□□□□ 0.19
VMP1-210ENST00000589823 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.21■□□□□ 0.19
VMP1-210ENST00000589823 HERC5Q9UII4 1024 aaKnown RBP16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms