RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 MROH7-TTC4A0A0A0MT08 1334 aa12.5□□□□□ -0.41
VPS4B-204ENST00000589604 HSPD1P10809 573 aaKnown RBP12.5□□□□□ -0.41
VPS4B-204ENST00000589604 SLC4A3P48751 1232 aa12.5□□□□□ -0.41
VPS4B-204ENST00000589604 CACNB3P54284 484 aa12.5□□□□□ -0.41
VPS4B-204ENST00000589604 MAP3K12Q12852 859 aa12.5□□□□□ -0.41
VPS4B-204ENST00000589604 RABEP1Q15276 862 aa12.5□□□□□ -0.41
VPS4B-204ENST00000589604 ANGEL2Q5VTE6 544 aaKnown RBP12.5□□□□□ -0.41
VPS4B-204ENST00000589604 PNMA8AQ86V59 439 aaPredicted RBP12.5□□□□□ -0.41
VPS4B-204ENST00000589604 FAM163AQ96GL9 167 aaPredicted RBP12.5□□□□□ -0.41
VPS4B-204ENST00000589604 DSCC1Q9BVC3 393 aa12.5□□□□□ -0.41
VPS4B-204ENST00000589604 GGA3Q9NZ52 723 aa12.5□□□□□ -0.41
VPS4B-204ENST00000589604 SLC27A2O14975 620 aa12.49□□□□□ -0.41
VPS4B-204ENST00000589604 MCCP23508 829 aa12.49□□□□□ -0.41
VPS4B-204ENST00000589604 RHBDL3P58872 404 aa12.49□□□□□ -0.41
VPS4B-204ENST00000589604 DYNLL1P63167 89 aaKnown RBP12.49□□□□□ -0.41
VPS4B-204ENST00000589604 CREB3L3Q68CJ9 461 aa12.49□□□□□ -0.41
VPS4B-204ENST00000589604 NAA16Q6N069 864 aaPredicted RBP12.49□□□□□ -0.41
VPS4B-204ENST00000589604 CDC42EP5Q6NZY7 148 aa12.49□□□□□ -0.41
VPS4B-204ENST00000589604 LDHDQ86WU2 507 aa12.49□□□□□ -0.41
VPS4B-204ENST00000589604 ZNF70Q9UC06 446 aaPredicted RBP12.49□□□□□ -0.41
VPS4B-204ENST00000589604 GPR75-ASB3A0A0A6YYF3 556 aa12.48□□□□□ -0.41
VPS4B-204ENST00000589604 ADM5C9JUS6 153 aa12.48□□□□□ -0.41
VPS4B-204ENST00000589604 GPAA1O43292 621 aa12.48□□□□□ -0.41
VPS4B-204ENST00000589604 CYP7A1P22680 504 aa12.48□□□□□ -0.41
VPS4B-204ENST00000589604 BTDP43251 543 aa12.48□□□□□ -0.41
VPS4B-204ENST00000589604 MMP14P50281 582 aa12.48□□□□□ -0.41
VPS4B-204ENST00000589604 COL9A3Q14050 684 aaPredicted RBP12.48□□□□□ -0.41
VPS4B-204ENST00000589604 TSGA10IPQ3SY00 556 aa12.48□□□□□ -0.41
VPS4B-204ENST00000589604 SPDYE2Q495Y8 402 aa12.48□□□□□ -0.41
VPS4B-204ENST00000589604 STRBPQ96SI9 672 aaKnown RBP12.48□□□□□ -0.41
VPS4B-204ENST00000589604 GLIS2Q9BZE0 524 aaPredicted RBP12.48□□□□□ -0.41
VPS4B-204ENST00000589604 CLEC11AQ9Y240 323 aa12.48□□□□□ -0.41
VPS4B-204ENST00000589604 CDK5RAP2Q96SN8 1893 aa12.48□□□□□ -0.41
VPS4B-204ENST00000589604 CNTNAP1P78357 1384 aa12.48□□□□□ -0.41
VPS4B-204ENST00000589604 TRAF5O00463 557 aa12.48□□□□□ -0.41
VPS4B-204ENST00000589604 ITGBL1O95965 494 aaPredicted RBP12.48□□□□□ -0.41
VPS4B-204ENST00000589604 NFIAQ12857 509 aa12.48□□□□□ -0.41
VPS4B-204ENST00000589604 ADCK5Q3MIX3 580 aa12.48□□□□□ -0.41
VPS4B-204ENST00000589604 CDAN1Q8IWY9 1227 aa12.48□□□□□ -0.41
VPS4B-204ENST00000589604 MIGA1Q8NAN2 632 aa12.48□□□□□ -0.41
VPS4B-204ENST00000589604 TOMM70O94826 608 aa12.47□□□□□ -0.41
VPS4B-204ENST00000589604 PRAMEF18Q5VWM3 479 aa12.47□□□□□ -0.41
VPS4B-204ENST00000589604 CHADLQ6NUI6 762 aa12.47□□□□□ -0.41
VPS4B-204ENST00000589604 USP48Q86UV5 1035 aa12.47□□□□□ -0.41
VPS4B-204ENST00000589604 ZFPM1Q8IX07 1006 aa12.47□□□□□ -0.41
VPS4B-204ENST00000589604 SH3RF3Q8TEJ3 882 aaPredicted RBP12.47□□□□□ -0.41
VPS4B-204ENST00000589604 ZC3H15Q8WU90 426 aaKnown RBP12.47□□□□□ -0.41
VPS4B-204ENST00000589604 RIOK1Q9BRS2 568 aaKnown RBP12.47□□□□□ -0.41
VPS4B-204ENST00000589604 DDX4Q9NQI0 724 aaKnown RBP12.47□□□□□ -0.41
VPS4B-204ENST00000589604 AATFQ9NY61 560 aaKnown RBP eCLIP12.47□□□□□ -0.41
VPS4B-204ENST00000589604 BAZ2AQ9UIF9 1905 aaKnown RBP12.46□□□□□ -0.41
VPS4B-204ENST00000589604 WDHD1O75717 1129 aaPredicted RBP12.46□□□□□ -0.41
VPS4B-204ENST00000589604 CYP21A2P08686 494 aa12.46□□□□□ -0.41
VPS4B-204ENST00000589604 GSTO1P78417 241 aa12.46□□□□□ -0.41
VPS4B-204ENST00000589604 RBM46Q8TBY0 533 aaKnown RBP12.46□□□□□ -0.41
VPS4B-204ENST00000589604 TM6SF1Q9BZW5 370 aa12.46□□□□□ -0.41
VPS4B-204ENST00000589604 VEZTQ9HBM0 779 aa12.46□□□□□ -0.41
VPS4B-204ENST00000589604 USP40Q9NVE5 1235 aa12.46□□□□□ -0.41
VPS4B-204ENST00000589604 FAM198AQ9UFP1 575 aa12.46□□□□□ -0.41
VPS4B-204ENST00000589604 RPAP1Q9BWH6 1393 aaPredicted RBP12.46□□□□□ -0.42
VPS4B-204ENST00000589604 TCP10L2B9ZVM9 353 aa12.45□□□□□ -0.42
VPS4B-204ENST00000589604 MBD4O95243 580 aa12.45□□□□□ -0.42
VPS4B-204ENST00000589604 FGAP02671 866 aa12.45□□□□□ -0.42
VPS4B-204ENST00000589604 PPP4CP60510 307 aa12.45□□□□□ -0.42
VPS4B-204ENST00000589604 LCORLQ8N3X6 602 aa12.45□□□□□ -0.42
VPS4B-204ENST00000589604 TTC14Q96N46 770 aa12.45□□□□□ -0.42
VPS4B-204ENST00000589604 PITPNM2Q9BZ72 1349 aa12.45□□□□□ -0.42
VPS4B-204ENST00000589604 FOCADQ5VW36 1801 aa12.45□□□□□ -0.42
VPS4B-204ENST00000589604 GSG1L2A8MUP6 293 aa12.45□□□□□ -0.42
VPS4B-204ENST00000589604 IGSF3O75054 1194 aa12.45□□□□□ -0.42
VPS4B-204ENST00000589604 LDHCP07864 332 aa12.45□□□□□ -0.42
VPS4B-204ENST00000589604 NEK4P51957 841 aa12.45□□□□□ -0.42
VPS4B-204ENST00000589604 BECN1Q14457 450 aa12.45□□□□□ -0.42
VPS4B-204ENST00000589604 ALX1Q15699 326 aa12.45□□□□□ -0.42
VPS4B-204ENST00000589604 KRT26Q7Z3Y9 468 aa12.45□□□□□ -0.42
VPS4B-204ENST00000589604 SLF2Q8IX21 1173 aa12.45□□□□□ -0.42
VPS4B-204ENST00000589604 DCPSQ96C86 337 aaKnown RBP12.45□□□□□ -0.42
VPS4B-204ENST00000589604 UPF3BQ9BZI7 483 aaKnown RBP12.45□□□□□ -0.42
VPS4B-204ENST00000589604 ARMT1Q9H993 441 aa12.45□□□□□ -0.42
VPS4B-204ENST00000589604 ZSWIM6Q9HCJ5 1215 aa12.45□□□□□ -0.42
VPS4B-204ENST00000589604 EPB41L4AQ9HCS5 686 aaPredicted RBP12.45□□□□□ -0.42
VPS4B-204ENST00000589604 SSC5DA1L4H1 1573 aa12.44□□□□□ -0.42
VPS4B-204ENST00000589604 PATL2C9JE40 543 aaKnown RBP12.44□□□□□ -0.42
VPS4B-204ENST00000589604 PRKAB2O43741 272 aa12.44□□□□□ -0.42
VPS4B-204ENST00000589604 SLURP2P0DP57 97 aa12.44□□□□□ -0.42
VPS4B-204ENST00000589604 CPA1P15085 419 aa12.44□□□□□ -0.42
VPS4B-204ENST00000589604 RASA3Q14644 834 aa12.44□□□□□ -0.42
VPS4B-204ENST00000589604 TMED8Q6PL24 325 aaPredicted RBP12.44□□□□□ -0.42
VPS4B-204ENST00000589604 STOX1Q6ZVD7 989 aa12.44□□□□□ -0.42
VPS4B-204ENST00000589604 SH3BP5LQ7L8J4 393 aa12.44□□□□□ -0.42
VPS4B-204ENST00000589604 SMC1BQ8NDV3 1235 aa12.44□□□□□ -0.42
VPS4B-204ENST00000589604 AIDAQ96BJ3 306 aa12.44□□□□□ -0.42
VPS4B-204ENST00000589604 TEPSINQ96N21 525 aa12.44□□□□□ -0.42
VPS4B-204ENST00000589604 TMEM39BQ9GZU3 492 aa12.44□□□□□ -0.42
VPS4B-204ENST00000589604 PASKQ96RG2 1323 aa12.44□□□□□ -0.42
VPS4B-204ENST00000589604 EVX2Q03828 476 aa12.43□□□□□ -0.42
VPS4B-204ENST00000589604 TCP10Q12799 353 aa12.43□□□□□ -0.42
VPS4B-204ENST00000589604 RNF20Q5VTR2 975 aa12.43□□□□□ -0.42
VPS4B-204ENST00000589604 JAKMIP1Q96N16 626 aaKnown RBP12.43□□□□□ -0.42
VPS4B-204ENST00000589604 IDI2Q9BXS1 227 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms