RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	R3HCC1	Q9Y3T6	440 aa	Known RBP	18.08	■□□□□ 0.48
DDX39A-209	ENST00000589318	MFSD14B	Q5SR56	506 aa		18.07	■□□□□ 0.48
DDX39A-209	ENST00000589318	TBC1D22A	Q8WUA7	517 aa		18.07	■□□□□ 0.48
DDX39A-209	ENST00000589318	DCP1A	Q9NPI6	582 aa	Predicted RBP	18.07	■□□□□ 0.48
DDX39A-209	ENST00000589318	GOLGB1	Q14789	3259 aa	Known RBP	18.07	■□□□□ 0.48
DDX39A-209	ENST00000589318	MROH7-TTC4	A0A0A0MT08	1334 aa		18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	GTF2I	P78347	998 aa		18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	GSTO1	P78417	241 aa		18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	FOXD4L5	Q5VV16	416 aa	Predicted RBP	18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	CTR9	Q6PD62	1173 aa		18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	RTFDC1	Q9BY42	306 aa	Predicted RBP	18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	CRNKL1	Q9BZJ0	848 aa	Known RBP	18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	CNNM2	Q9H8M5	875 aa		18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	SCN9A	Q15858	1988 aa		18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	WDR33	Q9C0J8	1336 aa	Known RBP	18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	STX6	O43752	255 aa		18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	PPP4C	P60510	307 aa		18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	DMTN	Q08495	405 aa		18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	MFSD6	Q6ZSS7	791 aa		18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	TMX4	Q9H1E5	349 aa	Predicted RBP	18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	ATP8A2	Q9NTI2	1148 aa		18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	ZSWIM5	Q9P217	1185 aa		18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	MKRN1	Q9UHC7	482 aa	Known RBP	18.06	■□□□□ 0.48
DDX39A-209	ENST00000589318	CYP2D7	A0A087X1C5	515 aa		18.05	■□□□□ 0.48
DDX39A-209	ENST00000589318	SH2B2	O14492	632 aa	Predicted RBP	18.05	■□□□□ 0.48
DDX39A-209	ENST00000589318	JAK2	O60674	1132 aa		18.05	■□□□□ 0.48
DDX39A-209	ENST00000589318	CTDNEP1	O95476	244 aa		18.05	■□□□□ 0.48
DDX39A-209	ENST00000589318	DOK7	Q18PE1	504 aa		18.05	■□□□□ 0.48
DDX39A-209	ENST00000589318	SMARCC2	Q8TAQ2	1214 aa		18.05	■□□□□ 0.48
DDX39A-209	ENST00000589318	IGDCC4	Q8TDY8	1250 aa		18.05	■□□□□ 0.48
DDX39A-209	ENST00000589318	CHAMP1	Q96JM3	812 aa		18.05	■□□□□ 0.48
DDX39A-209	ENST00000589318	CCDC94	Q9BW85	323 aa	Predicted RBP	18.05	■□□□□ 0.48
DDX39A-209	ENST00000589318	NAV1	Q8NEY1	1877 aa		18.05	■□□□□ 0.48
DDX39A-209	ENST00000589318	DDX60L	Q5H9U9	1706 aa	Known RBP	18.05	■□□□□ 0.48
DDX39A-209	ENST00000589318	MINDY4B	A8MYZ0	360 aa		18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	KDM4A	O75164	1064 aa		18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	EVX2	Q03828	476 aa		18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	CERS5	Q8N5B7	392 aa		18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	FAM163A	Q96GL9	167 aa	Predicted RBP	18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	EYA3	Q99504	573 aa		18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	KRT23	Q9C075	422 aa		18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	ANGEL1	Q9UNK9	670 aa	Known RBP	18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	HPS5	Q9UPZ3	1129 aa		18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	ZKSCAN5	Q9Y2L8	839 aa		18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	TCHH	Q07283	1943 aa		18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	FOCAD	Q5VW36	1801 aa		18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	USP17L12	C9JPN9	530 aa		18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	USP17L21	D6R901	530 aa		18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	LDHC	P07864	332 aa		18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	FGR	P09769	529 aa		18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	KCNA3	P22001	575 aa		18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	CCT2	P78371	535 aa	Known RBP	18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	NSUN7	Q8NE18	718 aa	Known RBP	18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	TMEM87B	Q96K49	555 aa		18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	LLPH	Q9BRT6	129 aa	Known RBP	18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	GTPBP4	Q9BZE4	634 aa	Known RBP	18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	SENP2	Q9HC62	589 aa		18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	NCOA5	Q9HCD5	579 aa	Known RBP	18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	ZNF219	Q9P2Y4	722 aa	Predicted RBP	18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	MTMR6	Q9Y217	621 aa		18.04	■□□□□ 0.48
DDX39A-209	ENST00000589318	GAK	O14976	1311 aa		18.03	■□□□□ 0.48
DDX39A-209	ENST00000589318	GPR75-ASB3	A0A0A6YYF3	556 aa		18.03	■□□□□ 0.48
DDX39A-209	ENST00000589318	KLF18	A0A0U1RQI7	1052 aa		18.03	■□□□□ 0.48
DDX39A-209	ENST00000589318	ZSCAN22	P10073	491 aa	Predicted RBP	18.03	■□□□□ 0.48
DDX39A-209	ENST00000589318	RNF41	Q9H4P4	317 aa	Predicted RBP	18.03	■□□□□ 0.48
DDX39A-209	ENST00000589318	LY9	Q9HBG7	655 aa		18.03	■□□□□ 0.48
DDX39A-209	ENST00000589318	SBK1	Q52WX2	424 aa		18.02	■□□□□ 0.48
DDX39A-209	ENST00000589318	STK11IP	Q8N1F8	1099 aa		18.02	■□□□□ 0.48
DDX39A-209	ENST00000589318	CCDC39	Q9UFE4	941 aa		18.02	■□□□□ 0.48
DDX39A-209	ENST00000589318	DDX49	Q9Y6V7	483 aa	Known RBP	18.02	■□□□□ 0.48
DDX39A-209	ENST00000589318	ADAMTSL1	Q8N6G6	1762 aa		18.02	■□□□□ 0.47
DDX39A-209	ENST00000589318	KIF20A	O95235	890 aa		18.02	■□□□□ 0.47
DDX39A-209	ENST00000589318	BTD	P43251	543 aa		18.02	■□□□□ 0.47
DDX39A-209	ENST00000589318	SUGT1	Q9Y2Z0	365 aa		18.02	■□□□□ 0.47
DDX39A-209	ENST00000589318	BAG3	O95817	575 aa		18.01	■□□□□ 0.47
DDX39A-209	ENST00000589318	RRP12	Q5JTH9	1297 aa	Known RBP	18.01	■□□□□ 0.47
DDX39A-209	ENST00000589318	CC2D2B	Q6DHV5	1058 aa		18.01	■□□□□ 0.47
DDX39A-209	ENST00000589318	PODN	Q7Z5L7	613 aa		18.01	■□□□□ 0.47
DDX39A-209	ENST00000589318	SGMS1	Q86VZ5	419 aa		18.01	■□□□□ 0.47
DDX39A-209	ENST00000589318	DBNDD1	Q9H9R9	158 aa		18.01	■□□□□ 0.47
DDX39A-209	ENST00000589318	ARPP21	Q9UBL0	812 aa	Predicted RBP	18.01	■□□□□ 0.47
DDX39A-209	ENST00000589318	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	18.01	■□□□□ 0.47
DDX39A-209	ENST00000589318	GOLGA8B	A8MQT2	603 aa		18	■□□□□ 0.47
DDX39A-209	ENST00000589318	ZBTB7A	O95365	584 aa		18	■□□□□ 0.47
DDX39A-209	ENST00000589318	CYP2D6	P10635	497 aa		18	■□□□□ 0.47
DDX39A-209	ENST00000589318	LIFR	P42702	1097 aa		18	■□□□□ 0.47
DDX39A-209	ENST00000589318	LARP1B	Q659C4	914 aa	Known RBP	18	■□□□□ 0.47
DDX39A-209	ENST00000589318	MCTP1	Q6DN14	999 aa		18	■□□□□ 0.47
DDX39A-209	ENST00000589318	MTA3	Q9BTC8	594 aa		18	■□□□□ 0.47
DDX39A-209	ENST00000589318	MXD3	Q9BW11	206 aa		18	■□□□□ 0.47
DDX39A-209	ENST00000589318	KCNQ5	Q9NR82	932 aa		18	■□□□□ 0.47
DDX39A-209	ENST00000589318	NAP1L2	Q9ULW6	460 aa	Predicted RBP	18	■□□□□ 0.47
DDX39A-209	ENST00000589318	PTPDC1	A2A3K4	754 aa		18	■□□□□ 0.47
DDX39A-209	ENST00000589318	C21orf2	O43822	256 aa		18	■□□□□ 0.47
DDX39A-209	ENST00000589318	F13A1	P00488	732 aa		18	■□□□□ 0.47
DDX39A-209	ENST00000589318	DPEP1	P16444	411 aa		18	■□□□□ 0.47
DDX39A-209	ENST00000589318	RHBDL3	P58872	404 aa		18	■□□□□ 0.47
DDX39A-209	ENST00000589318	TMEM67	Q5HYA8	995 aa		18	■□□□□ 0.47

Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms