RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 FAM86C1Q9NVL1 165 aa5.26□□□□□ -1.57
LIG3-211ENST00000588713 POLKQ9UBT6 870 aa5.26□□□□□ -1.57
LIG3-211ENST00000588713 USP34Q70CQ2 3546 aa5.26□□□□□ -1.57
LIG3-211ENST00000588713 XIRP2A4UGR9 3374 aa5.25□□□□□ -1.57
LIG3-211ENST00000588713 KIF20BQ96Q89 1820 aa5.25□□□□□ -1.57
LIG3-211ENST00000588713 LAMB1P07942 1786 aa5.25□□□□□ -1.57
LIG3-211ENST00000588713 USP2O75604 605 aaPredicted RBP5.25□□□□□ -1.57
LIG3-211ENST00000588713 NTSR2O95665 410 aa5.25□□□□□ -1.57
LIG3-211ENST00000588713 CENPQQ7L2Z9 268 aaPredicted RBP5.25□□□□□ -1.57
LIG3-211ENST00000588713 OGFOD1Q8N543 542 aa5.25□□□□□ -1.57
LIG3-211ENST00000588713 EXOC6Q8TAG9 804 aa5.25□□□□□ -1.57
LIG3-211ENST00000588713 PXYLP1Q8TE99 480 aa5.25□□□□□ -1.57
LIG3-211ENST00000588713 BADQ92934 168 aa5.25□□□□□ -1.57
LIG3-211ENST00000588713 GMLQ99445 158 aa5.25□□□□□ -1.57
LIG3-211ENST00000588713 ZC3H12CQ9C0D7 883 aaKnown RBP5.25□□□□□ -1.57
LIG3-211ENST00000588713 CD320Q9NPF0 282 aa5.25□□□□□ -1.57
LIG3-211ENST00000588713 KIAA1468Q9P260 1216 aa5.25□□□□□ -1.57
LIG3-211ENST00000588713 DACH1Q9UI36 760 aa5.25□□□□□ -1.57
LIG3-211ENST00000588713 BRPF3Q9ULD4 1205 aa5.25□□□□□ -1.57
LIG3-211ENST00000588713 USP16Q9Y5T5 823 aa5.25□□□□□ -1.57
LIG3-211ENST00000588713 SCN9AQ15858 1988 aa5.25□□□□□ -1.57
LIG3-211ENST00000588713 DDX60Q8IY21 1712 aaKnown RBP5.25□□□□□ -1.57
LIG3-211ENST00000588713 LAMB2P55268 1798 aa5.24□□□□□ -1.57
LIG3-211ENST00000588713 UNCXA6NJT0 531 aa5.24□□□□□ -1.57
LIG3-211ENST00000588713 KCNQ3O43525 872 aa5.24□□□□□ -1.57
LIG3-211ENST00000588713 UFL1O94874 794 aa5.24□□□□□ -1.57
LIG3-211ENST00000588713 CETPP11597 493 aa5.24□□□□□ -1.57
LIG3-211ENST00000588713 PLCB2Q00722 1185 aa5.24□□□□□ -1.57
LIG3-211ENST00000588713 SUPT20HL1Q3ZLR7 823 aa5.24□□□□□ -1.57
LIG3-211ENST00000588713 GLIPR1L2Q4G1C9 344 aa5.24□□□□□ -1.57
LIG3-211ENST00000588713 C6orf132Q5T0Z8 1188 aa5.24□□□□□ -1.57
LIG3-211ENST00000588713 NBPF12Q5TAG4 269 aaPredicted RBP5.24□□□□□ -1.57
LIG3-211ENST00000588713 RIC3Q7Z5B4 369 aa5.24□□□□□ -1.57
LIG3-211ENST00000588713 LAPTM4BQ86VI4 370 aa5.24□□□□□ -1.57
LIG3-211ENST00000588713 PRSS33Q8NF86 280 aa5.24□□□□□ -1.57
LIG3-211ENST00000588713 TBC1D16Q8TBP0 767 aa5.24□□□□□ -1.57
LIG3-211ENST00000588713 ZFRQ96KR1 1074 aaKnown RBP5.24□□□□□ -1.57
LIG3-211ENST00000588713 EPAS1Q99814 870 aa5.24□□□□□ -1.57
LIG3-211ENST00000588713 CHD8Q9HCK8 2581 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 CLRN2A0PK11 232 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 USP17L3A6NCW0 530 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 USP17L4A6NCW7 530 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 SOWAHBA6NEL2 793 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 DPYSL4O14531 572 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 TNPO2O14787 897 aaKnown RBP5.23□□□□□ -1.57
LIG3-211ENST00000588713 TLL1O43897 1013 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 COL6A1P12109 1028 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 HCLS1P14317 486 aaPredicted RBP5.23□□□□□ -1.57
LIG3-211ENST00000588713 SSTR3P32745 418 aaPredicted RBP5.23□□□□□ -1.57
LIG3-211ENST00000588713 TEFQ10587 303 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 TRIM32Q13049 653 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 VGLL4Q14135 290 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 L1TD1Q5T7N2 865 aaKnown RBP5.23□□□□□ -1.57
LIG3-211ENST00000588713 NBPF10Q6P3W6 841 aaKnown RBP5.23□□□□□ -1.57
LIG3-211ENST00000588713 CCDC129Q6ZRS4 1044 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 USP17L1Q7RTZ2 530 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 PPP1R42Q7Z4L9 355 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 FRAT1Q92837 279 aaPredicted RBP5.23□□□□□ -1.57
LIG3-211ENST00000588713 ZBTB3Q9H5J0 574 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 VEZTQ9HBM0 779 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 HMX1Q9NP08 348 aaPredicted RBP5.23□□□□□ -1.57
LIG3-211ENST00000588713 IGSF5Q9NSI5 407 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 DAXXQ9UER7 740 aaPredicted RBP5.23□□□□□ -1.57
LIG3-211ENST00000588713 SEPT9Q9UHD8 586 aaPredicted RBP5.23□□□□□ -1.57
LIG3-211ENST00000588713 OGDHLQ9ULD0 1010 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 CSADQ9Y600 493 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 IBTKQ9P2D0 1353 aaPredicted RBP5.23□□□□□ -1.57
LIG3-211ENST00000588713 COL1A1P02452 1464 aaPredicted RBP5.23□□□□□ -1.57
LIG3-211ENST00000588713 LRRC37A2A6NM11 1700 aa5.23□□□□□ -1.57
LIG3-211ENST00000588713 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.22□□□□□ -1.57
LIG3-211ENST00000588713 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.22□□□□□ -1.57
LIG3-211ENST00000588713 PDHXO00330 501 aa5.22□□□□□ -1.57
LIG3-211ENST00000588713 ERC2O15083 957 aa5.22□□□□□ -1.57
LIG3-211ENST00000588713 ALADP13716 330 aa5.22□□□□□ -1.57
LIG3-211ENST00000588713 RTP1P59025 263 aa5.22□□□□□ -1.57
LIG3-211ENST00000588713 KIF6Q6ZMV9 814 aa5.22□□□□□ -1.57
LIG3-211ENST00000588713 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.22□□□□□ -1.57
LIG3-211ENST00000588713 HFE2Q6ZVN8 426 aa5.22□□□□□ -1.57
LIG3-211ENST00000588713 TMC4Q7Z404 712 aa5.22□□□□□ -1.57
LIG3-211ENST00000588713 SPRYD3Q8NCJ5 442 aa5.22□□□□□ -1.57
LIG3-211ENST00000588713 DDX12PQ92771 950 aa5.22□□□□□ -1.57
LIG3-211ENST00000588713 ZNF428Q96B54 188 aa5.22□□□□□ -1.57
LIG3-211ENST00000588713 PUS7Q96PZ0 661 aaKnown RBP5.22□□□□□ -1.57
LIG3-211ENST00000588713 UTP14AQ9BVJ6 771 aaKnown RBP5.22□□□□□ -1.57
LIG3-211ENST00000588713 SENP6Q9GZR1 1112 aaPredicted RBP5.22□□□□□ -1.57
LIG3-211ENST00000588713 ZCCHC17Q9NP64 241 aaKnown RBP5.22□□□□□ -1.57
LIG3-211ENST00000588713 ATP11BQ9Y2G3 1177 aa5.22□□□□□ -1.57
LIG3-211ENST00000588713 COL3A1P02461 1466 aaPredicted RBP5.21□□□□□ -1.58
LIG3-211ENST00000588713 HMGCRP04035 888 aa5.21□□□□□ -1.58
LIG3-211ENST00000588713 CYP2C8P10632 490 aa5.21□□□□□ -1.58
LIG3-211ENST00000588713 SNAPC2Q13487 334 aa5.21□□□□□ -1.58
LIG3-211ENST00000588713 IRF5Q13568 498 aa5.21□□□□□ -1.58
LIG3-211ENST00000588713 ST3GAL2Q16842 350 aa5.21□□□□□ -1.58
LIG3-211ENST00000588713 MTHFSDQ2M296 383 aaKnown RBP5.21□□□□□ -1.58
LIG3-211ENST00000588713 C8orf34Q49A92 452 aa5.21□□□□□ -1.58
LIG3-211ENST00000588713 TTLL7Q6ZT98 887 aa5.21□□□□□ -1.58
LIG3-211ENST00000588713 NYAP1Q6ZVC0 841 aa5.21□□□□□ -1.58
LIG3-211ENST00000588713 KIAA0825Q8IV33 1275 aa5.21□□□□□ -1.58
LIG3-211ENST00000588713 GJD3Q8N144 294 aa5.21□□□□□ -1.58
LIG3-211ENST00000588713 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms