RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 IDI2Q9BXS1 227 aa27.22■■□□□ 1.95
SHMT1-210ENST00000583780 PHIPQ8WWQ0 1821 aa27.22■■□□□ 1.95
SHMT1-210ENST00000583780 RGS3P49796 1198 aa27.21■■□□□ 1.95
SHMT1-210ENST00000583780 SCYL3Q8IZE3 742 aa27.21■■□□□ 1.95
SHMT1-210ENST00000583780 SLAIN1Q8ND83 568 aa27.21■■□□□ 1.95
SHMT1-210ENST00000583780 ZBTB22O15209 634 aa27.2■■□□□ 1.94
SHMT1-210ENST00000583780 ENTPD3O75355 529 aa27.2■■□□□ 1.94
SHMT1-210ENST00000583780 PHKA1P46020 1223 aa27.2■■□□□ 1.94
SHMT1-210ENST00000583780 ATP2B3Q16720 1220 aa27.2■■□□□ 1.94
SHMT1-210ENST00000583780 FASTKD5Q7L8L6 764 aaKnown RBP27.2■■□□□ 1.94
SHMT1-210ENST00000583780 FBXO3Q9UK99 471 aa27.2■■□□□ 1.94
SHMT1-210ENST00000583780 DOCK2Q92608 1830 aa27.2■■□□□ 1.94
SHMT1-210ENST00000583780 ADCY3O60266 1144 aa27.19■■□□□ 1.94
SHMT1-210ENST00000583780 CIAO1O76071 339 aa27.19■■□□□ 1.94
SHMT1-210ENST00000583780 FLT3LGP49771 235 aa27.19■■□□□ 1.94
SHMT1-210ENST00000583780 SIL1Q9H173 461 aa27.19■■□□□ 1.94
SHMT1-210ENST00000583780 GNL3LQ9NVN8 582 aaKnown RBP27.19■■□□□ 1.94
SHMT1-210ENST00000583780 CEP126Q9P2H0 1117 aa27.19■■□□□ 1.94
SHMT1-210ENST00000583780 DENND2AQ9ULE3 1009 aa27.19■■□□□ 1.94
SHMT1-210ENST00000583780 DDTLA6NHG4 134 aaPredicted RBP27.18■■□□□ 1.94
SHMT1-210ENST00000583780 ZBTB7BO15156 539 aaPredicted RBP27.18■■□□□ 1.94
SHMT1-210ENST00000583780 SLC45A1Q9Y2W3 748 aa27.18■■□□□ 1.94
SHMT1-210ENST00000583780 GAKO14976 1311 aa27.17■■□□□ 1.94
SHMT1-210ENST00000583780 SEMA3EO15041 775 aa27.17■■□□□ 1.94
SHMT1-210ENST00000583780 FARP2O94887 1054 aaPredicted RBP27.17■■□□□ 1.94
SHMT1-210ENST00000583780 ELNP15502 786 aa27.17■■□□□ 1.94
SHMT1-210ENST00000583780 NR2E3Q9Y5X4 410 aa27.17■■□□□ 1.94
SHMT1-210ENST00000583780 GADL1Q6ZQY3 521 aa27.16■■□□□ 1.94
SHMT1-210ENST00000583780 PXYLP1Q8TE99 480 aa27.16■■□□□ 1.94
SHMT1-210ENST00000583780 DDX4Q9NQI0 724 aaKnown RBP27.16■■□□□ 1.94
SHMT1-210ENST00000583780 PICK1Q9NRD5 415 aa27.16■■□□□ 1.94
SHMT1-210ENST00000583780 RFX7Q2KHR2 1363 aa27.16■■□□□ 1.94
SHMT1-210ENST00000583780 ADORA1P30542 326 aa27.15■■□□□ 1.94
SHMT1-210ENST00000583780 IRF5Q13568 498 aa27.15■■□□□ 1.94
SHMT1-210ENST00000583780 FAM163AQ96GL9 167 aaPredicted RBP27.15■■□□□ 1.94
SHMT1-210ENST00000583780 CTNND1O60716 968 aaKnown RBP27.14■■□□□ 1.94
SHMT1-210ENST00000583780 CCDC102BQ68D86 513 aa27.14■■□□□ 1.94
SHMT1-210ENST00000583780 FRMD4AQ9P2Q2 1039 aaPredicted RBP27.14■■□□□ 1.94
SHMT1-210ENST00000583780 PA2G4Q9UQ80 394 aaKnown RBP27.14■■□□□ 1.94
SHMT1-210ENST00000583780 LRRFIP2Q9Y608 721 aaKnown RBP27.14■■□□□ 1.94
SHMT1-210ENST00000583780 DOCK1Q14185 1865 aa27.13■■□□□ 1.93
SHMT1-210ENST00000583780 INHAP05111 366 aa27.13■■□□□ 1.93
SHMT1-210ENST00000583780 ALPK3Q96L96 1907 aa27.13■■□□□ 1.93
SHMT1-210ENST00000583780 IL15P40933 162 aaPredicted RBP27.12■■□□□ 1.93
SHMT1-210ENST00000583780 SLFN5Q08AF3 891 aa27.12■■□□□ 1.93
SHMT1-210ENST00000583780 CCDC84Q86UT8 332 aaPredicted RBP27.12■■□□□ 1.93
SHMT1-210ENST00000583780 ZSCAN29Q8IWY8 852 aaPredicted RBP27.12■■□□□ 1.93
SHMT1-210ENST00000583780 DEFB118Q96PH6 123 aa27.12■■□□□ 1.93
SHMT1-210ENST00000583780 CRISPLD2Q9H0B8 497 aa27.12■■□□□ 1.93
SHMT1-210ENST00000583780 PAK6Q9NQU5 681 aaPredicted RBP27.12■■□□□ 1.93
SHMT1-210ENST00000583780 TNPO2O14787 897 aaKnown RBP27.11■■□□□ 1.93
SHMT1-210ENST00000583780 TFRCP02786 760 aaKnown RBP27.11■■□□□ 1.93
SHMT1-210ENST00000583780 TIMM10P62072 90 aa27.11■■□□□ 1.93
SHMT1-210ENST00000583780 ALDH1L2Q3SY69 923 aa27.11■■□□□ 1.93
SHMT1-210ENST00000583780 TRIM75PA6NK02 468 aa27.1■■□□□ 1.93
SHMT1-210ENST00000583780 E9PSI1 815 aa27.1■■□□□ 1.93
SHMT1-210ENST00000583780 UBTFL1P0CB47 393 aaPredicted RBP27.1■■□□□ 1.93
SHMT1-210ENST00000583780 CAPN2P17655 700 aa27.1■■□□□ 1.93
SHMT1-210ENST00000583780 RASGRF1Q13972 1273 aa27.1■■□□□ 1.93
SHMT1-210ENST00000583780 ZGPATQ8N5A5 531 aaKnown RBP27.1■■□□□ 1.93
SHMT1-210ENST00000583780 ZNF384Q8TF68 577 aa27.1■■□□□ 1.93
SHMT1-210ENST00000583780 COPRSQ9NQ92 184 aa27.1■■□□□ 1.93
SHMT1-210ENST00000583780 TBC1D12O60347 775 aa27.09■■□□□ 1.93
SHMT1-210ENST00000583780 RHBDL3P58872 404 aa27.09■■□□□ 1.93
SHMT1-210ENST00000583780 TREML2Q5T2D2 321 aa27.09■■□□□ 1.93
SHMT1-210ENST00000583780 ANKRD13CQ8N6S4 541 aa27.09■■□□□ 1.93
SHMT1-210ENST00000583780 ABCF2Q9UG63 623 aa27.09■■□□□ 1.93
SHMT1-210ENST00000583780 AGTPBP1Q9UPW5 1226 aa27.09■■□□□ 1.93
SHMT1-210ENST00000583780 SOX1O00570 391 aaPredicted RBP27.08■■□□□ 1.93
SHMT1-210ENST00000583780 EVI5O60447 810 aa27.08■■□□□ 1.93
SHMT1-210ENST00000583780 BTDP43251 543 aa27.08■■□□□ 1.93
SHMT1-210ENST00000583780 PICALMQ13492 652 aa27.08■■□□□ 1.93
SHMT1-210ENST00000583780 SMCR8Q8TEV9 937 aaPredicted RBP27.08■■□□□ 1.93
SHMT1-210ENST00000583780 GPR75-ASB3A0A0A6YYF3 556 aa27.07■■□□□ 1.92
SHMT1-210ENST00000583780 A0A1W2PPC1 479 aa27.07■■□□□ 1.92
SHMT1-210ENST00000583780 DZIP1Q86YF9 867 aaKnown RBP27.07■■□□□ 1.92
SHMT1-210ENST00000583780 PAWRQ96IZ0 340 aaKnown RBP27.07■■□□□ 1.92
SHMT1-210ENST00000583780 STAP2Q9UGK3 403 aa27.07■■□□□ 1.92
SHMT1-210ENST00000583780 PDS5AQ29RF7 1337 aaKnown RBP27.07■■□□□ 1.92
SHMT1-210ENST00000583780 LAMA3Q16787 3333 aa27.07■■□□□ 1.92
SHMT1-210ENST00000583780 SLF2Q8IX21 1173 aa27.06■■□□□ 1.92
SHMT1-210ENST00000583780 CDCA7LQ96GN5 454 aa27.06■■□□□ 1.92
SHMT1-210ENST00000583780 COL6A3P12111 3177 aa27.05■■□□□ 1.92
SHMT1-210ENST00000583780 NPM3O75607 178 aaKnown RBP27.05■■□□□ 1.92
SHMT1-210ENST00000583780 MECOMQ03112 1051 aa27.05■■□□□ 1.92
SHMT1-210ENST00000583780 COA7Q96BR5 231 aa27.05■■□□□ 1.92
SHMT1-210ENST00000583780 GJD2Q9UKL4 321 aa27.05■■□□□ 1.92
SHMT1-210ENST00000583780 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP27.05■■□□□ 1.92
SHMT1-210ENST00000583780 MROH7-TTC4A0A0A0MT08 1334 aa27.05■■□□□ 1.92
SHMT1-210ENST00000583780 FAM196BA6NMK8 535 aa27.04■■□□□ 1.92
SHMT1-210ENST00000583780 SPP2Q13103 211 aa27.04■■□□□ 1.92
SHMT1-210ENST00000583780 RRP1BQ14684 758 aaKnown RBP27.04■■□□□ 1.92
SHMT1-210ENST00000583780 FAM110CQ1W6H9 321 aa27.04■■□□□ 1.92
SHMT1-210ENST00000583780 SPTY2D1Q68D10 685 aaPredicted RBP27.04■■□□□ 1.92
SHMT1-210ENST00000583780 DIS3LQ8TF46 1054 aaKnown RBP27.04■■□□□ 1.92
SHMT1-210ENST00000583780 XAGE2Q96GT9 111 aa27.04■■□□□ 1.92
SHMT1-210ENST00000583780 SMC4Q9NTJ3 1288 aa27.04■■□□□ 1.92
SHMT1-210ENST00000583780 NOB1Q9ULX3 412 aaKnown RBP27.04■■□□□ 1.92
SHMT1-210ENST00000583780 TRMT2AQ8IZ69 625 aaKnown RBP27.03■■□□□ 1.92
SHMT1-210ENST00000583780 PROCA1Q8NCQ7 364 aaPredicted RBP27.03■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms