RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 KIAA0319Q5VV43 1072 aa6.89□□□□□ -1.31
SS18-223ENST00000583595 EAF1Q96JC9 268 aaPredicted RBP6.89□□□□□ -1.31
SS18-223ENST00000583595 RNPC3Q96LT9 517 aaKnown RBP6.89□□□□□ -1.31
SS18-223ENST00000583595 SRPK1Q96SB4 655 aaKnown RBP6.89□□□□□ -1.31
SS18-223ENST00000583595 RSRP1Q9BUV0 290 aa6.89□□□□□ -1.31
SS18-223ENST00000583595 ZFP64Q9NPA5 681 aa6.89□□□□□ -1.31
SS18-223ENST00000583595 GINM1Q9NU53 330 aa6.89□□□□□ -1.31
SS18-223ENST00000583595 IFT57Q9NWB7 429 aa6.89□□□□□ -1.31
SS18-223ENST00000583595 MEGF11A6BM72 1044 aa6.88□□□□□ -1.31
SS18-223ENST00000583595 PREPP48147 710 aa6.88□□□□□ -1.31
SS18-223ENST00000583595 GSTM4Q03013 218 aa6.88□□□□□ -1.31
SS18-223ENST00000583595 FDX2Q6P4F2 183 aa6.88□□□□□ -1.31
SS18-223ENST00000583595 FILIP1Q7Z7B0 1213 aa6.88□□□□□ -1.31
SS18-223ENST00000583595 SLC51AQ86UW1 340 aa6.88□□□□□ -1.31
SS18-223ENST00000583595 RELL1Q8IUW5 271 aa6.88□□□□□ -1.31
SS18-223ENST00000583595 KIAA0825Q8IV33 1275 aa6.88□□□□□ -1.31
SS18-223ENST00000583595 MKL1Q969V6 931 aa6.88□□□□□ -1.31
SS18-223ENST00000583595 MYRFLQ96LU7 910 aa6.88□□□□□ -1.31
SS18-223ENST00000583595 RNF112Q9ULX5 631 aa6.88□□□□□ -1.31
SS18-223ENST00000583595 KRTAP9-6A0A140TA67 174 aa6.87□□□□□ -1.31
SS18-223ENST00000583595 LOC100289279A0A1B0GTE1 492 aa6.87□□□□□ -1.31
SS18-223ENST00000583595 FAM221BA6H8Z2 402 aa6.87□□□□□ -1.31
SS18-223ENST00000583595 KLF4O43474 513 aa6.87□□□□□ -1.31
SS18-223ENST00000583595 GBP2P32456 591 aaPredicted RBP6.87□□□□□ -1.31
SS18-223ENST00000583595 EIF4A3P38919 411 aaKnown RBP6.87□□□□□ -1.31
SS18-223ENST00000583595 ANAPC15P60006 121 aa6.87□□□□□ -1.31
SS18-223ENST00000583595 PCDH1Q08174 1060 aa6.87□□□□□ -1.31
SS18-223ENST00000583595 LRP8Q14114 963 aa6.87□□□□□ -1.31
SS18-223ENST00000583595 GRM2Q14416 872 aa6.87□□□□□ -1.31
SS18-223ENST00000583595 ZNF423Q2M1K9 1284 aa6.87□□□□□ -1.31
SS18-223ENST00000583595 RNF187Q5TA31 235 aaPredicted RBP6.87□□□□□ -1.31
SS18-223ENST00000583595 NBPF6Q5VWK0 638 aa6.87□□□□□ -1.31
SS18-223ENST00000583595 ZNF296Q8WUU4 475 aaPredicted RBP6.87□□□□□ -1.31
SS18-223ENST00000583595 NBPF4Q96M43 638 aa6.87□□□□□ -1.31
SS18-223ENST00000583595 SRCIN1Q9C0H9 1055 aa6.87□□□□□ -1.31
SS18-223ENST00000583595 EHD4Q9H223 541 aa6.87□□□□□ -1.31
SS18-223ENST00000583595 CLEC4MQ9H2X3 399 aaPredicted RBP6.87□□□□□ -1.31
SS18-223ENST00000583595 TTF2Q9UNY4 1162 aaKnown RBP6.87□□□□□ -1.31
SS18-223ENST00000583595 NOP58Q9Y2X3 529 aaKnown RBP6.87□□□□□ -1.31
SS18-223ENST00000583595 HYAL3O43820 417 aaPredicted RBP6.86□□□□□ -1.31
SS18-223ENST00000583595 DLGAP3O95886 979 aa6.86□□□□□ -1.31
SS18-223ENST00000583595 IGLV1-40P01703 118 aa6.86□□□□□ -1.31
SS18-223ENST00000583595 BMP3P12645 472 aa6.86□□□□□ -1.31
SS18-223ENST00000583595 NUTM2GQ5VZR2 741 aa6.86□□□□□ -1.31
SS18-223ENST00000583595 TRIM42Q8IWZ5 723 aa6.86□□□□□ -1.31
SS18-223ENST00000583595 FAM20CQ8IXL6 584 aa6.86□□□□□ -1.31
SS18-223ENST00000583595 C12orf50Q8NA57 414 aaPredicted RBP6.86□□□□□ -1.31
SS18-223ENST00000583595 HNRNPLLQ8WVV9 542 aaKnown RBP6.86□□□□□ -1.31
SS18-223ENST00000583595 NOC4LQ9BVI4 516 aaKnown RBP6.86□□□□□ -1.31
SS18-223ENST00000583595 TMPRSS13Q9BYE2 586 aa6.86□□□□□ -1.31
SS18-223ENST00000583595 C7orf69Q9H7B7 122 aa6.86□□□□□ -1.31
SS18-223ENST00000583595 SIRPGQ9P1W8 387 aa6.86□□□□□ -1.31
SS18-223ENST00000583595 HMX2A2RU54 273 aa6.85□□□□□ -1.31
SS18-223ENST00000583595 GSC2O15499 205 aa6.85□□□□□ -1.31
SS18-223ENST00000583595 EIF4EBP3O60516 100 aaPredicted RBP6.85□□□□□ -1.31
SS18-223ENST00000583595 MAP3K11Q16584 847 aa6.85□□□□□ -1.31
SS18-223ENST00000583595 FBXL19Q6PCT2 694 aa6.85□□□□□ -1.31
SS18-223ENST00000583595 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.85□□□□□ -1.31
SS18-223ENST00000583595 CERS3Q8IU89 383 aa6.85□□□□□ -1.31
SS18-223ENST00000583595 GLIS3Q8NEA6 775 aa6.85□□□□□ -1.31
SS18-223ENST00000583595 TMEM74Q96NL1 305 aa6.85□□□□□ -1.31
SS18-223ENST00000583595 TRIM55Q9BYV6 548 aa6.85□□□□□ -1.31
SS18-223ENST00000583595 KCNF1Q9H3M0 494 aa6.85□□□□□ -1.31
SS18-223ENST00000583595 KANSL2Q9H9L4 492 aa6.85□□□□□ -1.31
SS18-223ENST00000583595 PCDH12Q9NPG4 1184 aa6.85□□□□□ -1.31
SS18-223ENST00000583595 KLHL42Q9P2K6 505 aa6.85□□□□□ -1.31
SS18-223ENST00000583595 COL4A3BPQ9Y5P4 624 aa6.85□□□□□ -1.31
SS18-223ENST00000583595 CCDC85CA6NKD9 419 aa6.84□□□□□ -1.31
SS18-223ENST00000583595 ENPP3O14638 875 aa6.84□□□□□ -1.31
SS18-223ENST00000583595 GAS2O43903 313 aaKnown RBP6.84□□□□□ -1.31
SS18-223ENST00000583595 CHMP4BP1P59074 171 aa6.84□□□□□ -1.31
SS18-223ENST00000583595 RAB33AQ14088 237 aa6.84□□□□□ -1.31
SS18-223ENST00000583595 CCDC85BQ15834 202 aaPredicted RBP6.84□□□□□ -1.31
SS18-223ENST00000583595 EXOSC6Q5RKV6 272 aaKnown RBP6.84□□□□□ -1.31
SS18-223ENST00000583595 BEND4Q6ZU67 534 aa6.84□□□□□ -1.31
SS18-223ENST00000583595 CLEC10AQ8IUN9 316 aa6.84□□□□□ -1.31
SS18-223ENST00000583595 SMG8Q8ND04 991 aaKnown RBP6.84□□□□□ -1.31
SS18-223ENST00000583595 C3orf58Q8NDZ4 430 aa6.84□□□□□ -1.31
SS18-223ENST00000583595 FAM83CQ9BQN1 747 aa6.84□□□□□ -1.31
SS18-223ENST00000583595 CYP4F12Q9HCS2 524 aa6.84□□□□□ -1.31
SS18-223ENST00000583595 PPP4R2Q9NY27 417 aa6.84□□□□□ -1.31
SS18-223ENST00000583595 SNTG2Q9NY99 539 aa6.84□□□□□ -1.31
SS18-223ENST00000583595 FBXO24O75426 580 aa6.83□□□□□ -1.32
SS18-223ENST00000583595 GSTT1P30711 240 aa6.83□□□□□ -1.32
SS18-223ENST00000583595 FCGRTP55899 365 aa6.83□□□□□ -1.32
SS18-223ENST00000583595 FAM160A1Q05DH4 1040 aa6.83□□□□□ -1.32
SS18-223ENST00000583595 NFIAQ12857 509 aa6.83□□□□□ -1.32
SS18-223ENST00000583595 RNF43Q68DV7 783 aa6.83□□□□□ -1.32
SS18-223ENST00000583595 NBPF11Q86T75 865 aa6.83□□□□□ -1.32
SS18-223ENST00000583595 KRTAP1-3Q8IUG1 177 aa6.83□□□□□ -1.32
SS18-223ENST00000583595 DHX37Q8IY37 1157 aaKnown RBP6.83□□□□□ -1.32
SS18-223ENST00000583595 ZCRB1Q8TBF4 217 aaKnown RBP6.83□□□□□ -1.32
SS18-223ENST00000583595 CPLX3Q8WVH0 158 aa6.83□□□□□ -1.32
SS18-223ENST00000583595 ANAPC16Q96DE5 110 aa6.83□□□□□ -1.32
SS18-223ENST00000583595 BRINP2Q9C0B6 783 aa6.83□□□□□ -1.32
SS18-223ENST00000583595 NRSN2Q9GZP1 204 aa6.83□□□□□ -1.32
SS18-223ENST00000583595 SUGCTQ9HAC7 445 aa6.83□□□□□ -1.32
SS18-223ENST00000583595 TLR6Q9Y2C9 796 aa6.83□□□□□ -1.32
SS18-223ENST00000583595 HIF3AQ9Y2N7 669 aa6.83□□□□□ -1.32
SS18-223ENST00000583595 U2SURPO15042 1029 aaKnown RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms