RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 EREGO14944 169 aa7.05□□□□□ -1.28
SMCHD1-209ENST00000583441 IGHA2P01877 340 aa7.05□□□□□ -1.28
SMCHD1-209ENST00000583441 GDNFP39905 211 aa7.05□□□□□ -1.28
SMCHD1-209ENST00000583441 KCNC2Q96PR1 638 aa7.05□□□□□ -1.28
SMCHD1-209ENST00000583441 RTEL1Q9NZ71 1219 aa7.05□□□□□ -1.28
SMCHD1-209ENST00000583441 RNGTTO60942 597 aaKnown RBP7.04□□□□□ -1.28
SMCHD1-209ENST00000583441 ERICH6BQ5W0A0 696 aa7.04□□□□□ -1.28
SMCHD1-209ENST00000583441 CAPN12Q6ZSI9 719 aa7.04□□□□□ -1.28
SMCHD1-209ENST00000583441 CCDC97Q96F63 343 aaPredicted RBP7.04□□□□□ -1.28
SMCHD1-209ENST00000583441 SERPINA10Q9UK55 444 aa7.04□□□□□ -1.28
SMCHD1-209ENST00000583441 A6NHS1 94 aa7.03□□□□□ -1.28
SMCHD1-209ENST00000583441 TMPRSS2O15393 492 aa7.03□□□□□ -1.28
SMCHD1-209ENST00000583441 CELA3BP08861 270 aa7.03□□□□□ -1.28
SMCHD1-209ENST00000583441 SWI5Q1ZZU3 235 aa7.03□□□□□ -1.28
SMCHD1-209ENST00000583441 ZXDCQ2QGD7 858 aaPredicted RBP7.03□□□□□ -1.28
SMCHD1-209ENST00000583441 ATCAYQ86WG3 371 aa7.03□□□□□ -1.28
SMCHD1-209ENST00000583441 CCDC82Q8N4S0 544 aa7.03□□□□□ -1.28
SMCHD1-209ENST00000583441 TOP6BLQ8N6T0 577 aa7.03□□□□□ -1.28
SMCHD1-209ENST00000583441 EDEM1Q92611 657 aa7.03□□□□□ -1.28
SMCHD1-209ENST00000583441 GGNBP2Q9H3C7 697 aa7.03□□□□□ -1.28
SMCHD1-209ENST00000583441 CARS2Q9HA77 564 aaKnown RBP7.03□□□□□ -1.28
SMCHD1-209ENST00000583441 ZNF777Q9ULD5 760 aaPredicted RBP7.03□□□□□ -1.28
SMCHD1-209ENST00000583441 A0A096LPE4 126 aa7.02□□□□□ -1.29
SMCHD1-209ENST00000583441 A0A1W2PPZ6 126 aa7.02□□□□□ -1.29
SMCHD1-209ENST00000583441 SUV39H1O43463 412 aa7.02□□□□□ -1.29
SMCHD1-209ENST00000583441 PHACTR2O75167 634 aa7.02□□□□□ -1.29
SMCHD1-209ENST00000583441 DNM1Q05193 864 aaKnown RBP7.02□□□□□ -1.29
SMCHD1-209ENST00000583441 MARCH10Q8NA82 808 aaPredicted RBP7.02□□□□□ -1.29
SMCHD1-209ENST00000583441 FANCD2OSQ96PS1 177 aa7.02□□□□□ -1.29
SMCHD1-209ENST00000583441 TRIM56Q9BRZ2 755 aaKnown RBP7.02□□□□□ -1.29
SMCHD1-209ENST00000583441 C19orf73Q9NVV2 129 aa7.02□□□□□ -1.29
SMCHD1-209ENST00000583441 GTF2IRD1Q9UHL9 959 aa7.02□□□□□ -1.29
SMCHD1-209ENST00000583441 PCOLCE2Q9UKZ9 415 aa7.02□□□□□ -1.29
SMCHD1-209ENST00000583441 SLFN14P0C7P3 912 aa7.01□□□□□ -1.29
SMCHD1-209ENST00000583441 OCLNQ16625 522 aa7.01□□□□□ -1.29
SMCHD1-209ENST00000583441 SPACA3Q8IXA5 215 aa7.01□□□□□ -1.29
SMCHD1-209ENST00000583441 HEXIM2Q96MH2 286 aaKnown RBP7.01□□□□□ -1.29
SMCHD1-209ENST00000583441 ARID3AQ99856 593 aa7.01□□□□□ -1.29
SMCHD1-209ENST00000583441 ID3Q02535 119 aa7□□□□□ -1.29
SMCHD1-209ENST00000583441 ABHD4Q8TB40 342 aa7□□□□□ -1.29
SMCHD1-209ENST00000583441 CCDC120Q96HB5 630 aa7□□□□□ -1.29
SMCHD1-209ENST00000583441 LATS2Q9NRM7 1088 aa7□□□□□ -1.29
SMCHD1-209ENST00000583441 SRFP11831 508 aa6.99□□□□□ -1.29
SMCHD1-209ENST00000583441 LIG1P18858 919 aa6.99□□□□□ -1.29
SMCHD1-209ENST00000583441 RFX1P22670 979 aa6.99□□□□□ -1.29
SMCHD1-209ENST00000583441 TCERG1LQ5VWI1 586 aa6.99□□□□□ -1.29
SMCHD1-209ENST00000583441 SSU72Q9NP77 194 aaKnown RBP6.99□□□□□ -1.29
SMCHD1-209ENST00000583441 ACIN1Q9UKV3 1341 aaKnown RBP6.99□□□□□ -1.29
SMCHD1-209ENST00000583441 IGF2BP3O00425 579 aaKnown RBP eCLIP6.98□□□□□ -1.29
SMCHD1-209ENST00000583441 CLCN7P51798 805 aa6.98□□□□□ -1.29
SMCHD1-209ENST00000583441 TTLL4Q14679 1199 aa6.98□□□□□ -1.29
SMCHD1-209ENST00000583441 NKPD1Q17RQ9 610 aa6.98□□□□□ -1.29
SMCHD1-209ENST00000583441 PEAR1Q5VY43 1037 aaPredicted RBP6.98□□□□□ -1.29
SMCHD1-209ENST00000583441 CALR3Q96L12 384 aaKnown RBP6.98□□□□□ -1.29
SMCHD1-209ENST00000583441 DISC1Q9NRI5 854 aa6.98□□□□□ -1.29
SMCHD1-209ENST00000583441 NOVA2Q9UNW9 492 aaKnown RBP6.98□□□□□ -1.29
SMCHD1-209ENST00000583441 HCLS1P14317 486 aaPredicted RBP6.97□□□□□ -1.29
SMCHD1-209ENST00000583441 RAC2P15153 192 aa6.97□□□□□ -1.29
SMCHD1-209ENST00000583441 BAHD1Q8TBE0 780 aaPredicted RBP6.97□□□□□ -1.29
SMCHD1-209ENST00000583441 GNAT3A8MTJ3 354 aa6.96□□□□□ -1.3
SMCHD1-209ENST00000583441 PDGFAP04085 211 aa6.96□□□□□ -1.3
SMCHD1-209ENST00000583441 SPRED3Q2MJR0 410 aa6.96□□□□□ -1.3
SMCHD1-209ENST00000583441 NPAS4Q8IUM7 802 aa6.96□□□□□ -1.3
SMCHD1-209ENST00000583441 TRIM13O60858 407 aa6.95□□□□□ -1.3
SMCHD1-209ENST00000583441 TNFRSF21O75509 655 aa6.95□□□□□ -1.3
SMCHD1-209ENST00000583441 SASH1O94885 1247 aa6.95□□□□□ -1.3
SMCHD1-209ENST00000583441 FAM214BQ7L5A3 538 aa6.95□□□□□ -1.3
SMCHD1-209ENST00000583441 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.95□□□□□ -1.3
SMCHD1-209ENST00000583441 SNX29Q8TEQ0 813 aa6.95□□□□□ -1.3
SMCHD1-209ENST00000583441 WDR89Q96FK6 387 aaPredicted RBP6.95□□□□□ -1.3
SMCHD1-209ENST00000583441 CXXC1Q9P0U4 656 aaPredicted RBP6.95□□□□□ -1.3
SMCHD1-209ENST00000583441 CNOT6Q9ULM6 557 aaKnown RBP6.95□□□□□ -1.3
SMCHD1-209ENST00000583441 AMOTL2Q9Y2J4 779 aa6.95□□□□□ -1.3
SMCHD1-209ENST00000583441 B3GALT4O96024 378 aa6.94□□□□□ -1.3
SMCHD1-209ENST00000583441 AP3B2Q13367 1082 aa6.94□□□□□ -1.3
SMCHD1-209ENST00000583441 ZNF385BQ569K4 471 aa6.94□□□□□ -1.3
SMCHD1-209ENST00000583441 MZF1P28698 734 aaPredicted RBP6.93□□□□□ -1.3
SMCHD1-209ENST00000583441 GRIA4P48058 902 aa6.93□□□□□ -1.3
SMCHD1-209ENST00000583441 HNRNPUQ00839 825 aaKnown RBP eCLIP6.93□□□□□ -1.3
SMCHD1-209ENST00000583441 CDCA8Q53HL2 280 aa6.93□□□□□ -1.3
SMCHD1-209ENST00000583441 CCNJLQ8IV13 435 aa6.93□□□□□ -1.3
SMCHD1-209ENST00000583441 XYLT2Q9H1B5 865 aa6.93□□□□□ -1.3
SMCHD1-209ENST00000583441 PPP1R15AO75807 674 aaPredicted RBP6.92□□□□□ -1.3
SMCHD1-209ENST00000583441 INSRRP14616 1297 aa6.92□□□□□ -1.3
SMCHD1-209ENST00000583441 DLG4P78352 724 aa6.92□□□□□ -1.3
SMCHD1-209ENST00000583441 PUM1Q14671 1186 aaKnown RBP eCLIP6.92□□□□□ -1.3
SMCHD1-209ENST00000583441 TMEM151BQ8IW70 566 aa6.92□□□□□ -1.3
SMCHD1-209ENST00000583441 ZC3H12CQ9C0D7 883 aaKnown RBP6.92□□□□□ -1.3
SMCHD1-209ENST00000583441 CCDC86Q9H6F5 360 aaKnown RBP6.92□□□□□ -1.3
SMCHD1-209ENST00000583441 ATP13A1Q9HD20 1204 aa6.92□□□□□ -1.3
SMCHD1-209ENST00000583441 OTOL1A6NHN0 477 aaPredicted RBP6.91□□□□□ -1.3
SMCHD1-209ENST00000583441 SPATS1Q496A3 300 aa6.91□□□□□ -1.3
SMCHD1-209ENST00000583441 TTC6Q86TZ1 520 aa6.91□□□□□ -1.3
SMCHD1-209ENST00000583441 ISL2Q96A47 359 aa6.91□□□□□ -1.3
SMCHD1-209ENST00000583441 ALPK1Q96QP1 1244 aa6.91□□□□□ -1.3
SMCHD1-209ENST00000583441 LIN7BQ9HAP6 207 aa6.91□□□□□ -1.3
SMCHD1-209ENST00000583441 FOXD3Q9UJU5 478 aaPredicted RBP6.91□□□□□ -1.3
SMCHD1-209ENST00000583441 RFXAPO00287 272 aa6.9□□□□□ -1.3
SMCHD1-209ENST00000583441 NOM1Q5C9Z4 860 aaKnown RBP6.9□□□□□ -1.3
SMCHD1-209ENST00000583441 MYLIPQ8WY64 445 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms