RNA–Protein interactions for RNA: ENST00000580054.1

SMARCD2-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 5

Gene SMARCD2, Length 477 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-208ENST00000580054 MAST3O60307 1309 aa11.73□□□□□ -0.53
SMARCD2-208ENST00000580054 COL2A1P02458 1487 aaPredicted RBP11.73□□□□□ -0.53
SMARCD2-208ENST00000580054 SLURP2P0DP57 97 aa11.73□□□□□ -0.53
SMARCD2-208ENST00000580054 FRMPD3Q5JV73 1810 aa11.73□□□□□ -0.53
SMARCD2-208ENST00000580054 CDC42EP5Q6NZY7 148 aa11.73□□□□□ -0.53
SMARCD2-208ENST00000580054 HHIPL2Q6UWX4 724 aa11.73□□□□□ -0.53
SMARCD2-208ENST00000580054 ZFPM1Q8IX07 1006 aa11.73□□□□□ -0.53
SMARCD2-208ENST00000580054 UBE2OQ9C0C9 1292 aaKnown RBP11.73□□□□□ -0.53
SMARCD2-208ENST00000580054 MYH2Q9UKX2 1941 aa11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 ATAD5Q96QE3 1844 aa11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 PFASO15067 1338 aa11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 MROH5Q6ZUA9 1318 aa11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 DIXDC1Q155Q3 683 aa11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 LRRC24Q50LG9 513 aa11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 CCDC84Q86UT8 332 aaPredicted RBP11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 ANKRD13CQ8N6S4 541 aa11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 ANKLE1Q8NAG6 615 aa11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 SMCR8Q8TEV9 937 aaPredicted RBP11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 KAZALD1Q96I82 304 aa11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 SUCLG2Q96I99 432 aa11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 FAM161BQ96MY7 647 aa11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 C11orf49Q9H6J7 331 aa11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 SPINK5Q9NQ38 1064 aaPredicted RBP11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 FAM198AQ9UFP1 575 aa11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 DAGLAQ9Y4D2 1042 aa11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 ZHX2Q9Y6X8 837 aa11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 MAST2Q6P0Q8 1798 aa11.72□□□□□ -0.53
SMARCD2-208ENST00000580054 PHF20L1A8MW92 1017 aa11.71□□□□□ -0.53
SMARCD2-208ENST00000580054 CAPN2P17655 700 aa11.71□□□□□ -0.53
SMARCD2-208ENST00000580054 CAVIN4Q5BKX8 364 aa11.71□□□□□ -0.53
SMARCD2-208ENST00000580054 METTL24Q5JXM2 366 aa11.71□□□□□ -0.53
SMARCD2-208ENST00000580054 FASTKD5Q7L8L6 764 aaKnown RBP11.71□□□□□ -0.53
SMARCD2-208ENST00000580054 WWC1Q8IX03 1113 aa11.71□□□□□ -0.53
SMARCD2-208ENST00000580054 SCYL3Q8IZE3 742 aa11.71□□□□□ -0.53
SMARCD2-208ENST00000580054 VGLL2Q8N8G2 317 aa11.71□□□□□ -0.53
SMARCD2-208ENST00000580054 MRIQ9BWK5 157 aa11.71□□□□□ -0.53
SMARCD2-208ENST00000580054 NBPF3Q9H094 633 aa11.71□□□□□ -0.53
SMARCD2-208ENST00000580054 AFG3L2Q9Y4W6 797 aa11.71□□□□□ -0.53
SMARCD2-208ENST00000580054 CDH23Q9H251 3354 aa11.7□□□□□ -0.54
SMARCD2-208ENST00000580054 FANCIQ9NVI1 1328 aa11.7□□□□□ -0.54
SMARCD2-208ENST00000580054 TRIM75PA6NK02 468 aa11.7□□□□□ -0.54
SMARCD2-208ENST00000580054 HMGCRP04035 888 aa11.7□□□□□ -0.54
SMARCD2-208ENST00000580054 PTPRAP18433 802 aa11.7□□□□□ -0.54
SMARCD2-208ENST00000580054 MDM2Q00987 491 aaPredicted RBP11.7□□□□□ -0.54
SMARCD2-208ENST00000580054 CCDC27Q2M243 656 aa11.7□□□□□ -0.54
SMARCD2-208ENST00000580054 CCDC184Q52MB2 194 aa11.7□□□□□ -0.54
SMARCD2-208ENST00000580054 TREML2Q5T2D2 321 aa11.7□□□□□ -0.54
SMARCD2-208ENST00000580054 COA7Q96BR5 231 aa11.7□□□□□ -0.54
SMARCD2-208ENST00000580054 SLC45A1Q9Y2W3 748 aa11.7□□□□□ -0.54
SMARCD2-208ENST00000580054 SUGT1Q9Y2Z0 365 aa11.7□□□□□ -0.54
SMARCD2-208ENST00000580054 LTBP2Q14767 1821 aa11.7□□□□□ -0.54
SMARCD2-208ENST00000580054 RFX7Q2KHR2 1363 aa11.69□□□□□ -0.54
SMARCD2-208ENST00000580054 IL16Q14005 1332 aa11.69□□□□□ -0.54
SMARCD2-208ENST00000580054 PRDX5P30044 214 aa11.69□□□□□ -0.54
SMARCD2-208ENST00000580054 FAM110CQ1W6H9 321 aa11.69□□□□□ -0.54
SMARCD2-208ENST00000580054 KLHDC4Q8TBB5 520 aa11.69□□□□□ -0.54
SMARCD2-208ENST00000580054 TRIB2Q92519 343 aa11.69□□□□□ -0.54
SMARCD2-208ENST00000580054 PICK1Q9NRD5 415 aa11.69□□□□□ -0.54
SMARCD2-208ENST00000580054 C9orf78Q9NZ63 289 aaPredicted RBP11.69□□□□□ -0.54
SMARCD2-208ENST00000580054 DNAH12Q6ZR08 3092 aa11.68□□□□□ -0.54
SMARCD2-208ENST00000580054 POTEB2H3BUK9 544 aa11.68□□□□□ -0.54
SMARCD2-208ENST00000580054 VAMP4O75379 141 aa11.68□□□□□ -0.54
SMARCD2-208ENST00000580054 PDE8BO95263 885 aa11.68□□□□□ -0.54
SMARCD2-208ENST00000580054 SH3BP5LQ7L8J4 393 aa11.68□□□□□ -0.54
SMARCD2-208ENST00000580054 HMX1Q9NP08 348 aaPredicted RBP11.68□□□□□ -0.54
SMARCD2-208ENST00000580054 PRDM6Q9NQX0 595 aa11.68□□□□□ -0.54
SMARCD2-208ENST00000580054 USP40Q9NVE5 1235 aa11.68□□□□□ -0.54
SMARCD2-208ENST00000580054 OGDHLQ9ULD0 1010 aa11.68□□□□□ -0.54
SMARCD2-208ENST00000580054 AGTPBP1Q9UPW5 1226 aa11.68□□□□□ -0.54
SMARCD2-208ENST00000580054 NBPF7P0C2Y1 421 aaPredicted RBP11.67□□□□□ -0.54
SMARCD2-208ENST00000580054 FGFR2P21802 821 aa11.67□□□□□ -0.54
SMARCD2-208ENST00000580054 RGS3P49796 1198 aa11.67□□□□□ -0.54
SMARCD2-208ENST00000580054 LRRC26Q2I0M4 334 aa11.67□□□□□ -0.54
SMARCD2-208ENST00000580054 SLC4A10Q6U841 1118 aa11.67□□□□□ -0.54
SMARCD2-208ENST00000580054 ANKRD44Q8N8A2 993 aa11.67□□□□□ -0.54
SMARCD2-208ENST00000580054 BICC1Q9H694 974 aaKnown RBP11.67□□□□□ -0.54
SMARCD2-208ENST00000580054 GJD2Q9UKL4 321 aa11.67□□□□□ -0.54
SMARCD2-208ENST00000580054 MUC3AQ02505 3323 aa11.66□□□□□ -0.54
SMARCD2-208ENST00000580054 DDTLA6NHG4 134 aaPredicted RBP11.66□□□□□ -0.54
SMARCD2-208ENST00000580054 COL6A1P12109 1028 aa11.66□□□□□ -0.54
SMARCD2-208ENST00000580054 PRKAR2AP13861 404 aaKnown RBP11.66□□□□□ -0.54
SMARCD2-208ENST00000580054 MAP3K21Q5TCX8 1036 aa11.66□□□□□ -0.54
SMARCD2-208ENST00000580054 FAM109BQ6ICB4 259 aaPredicted RBP11.66□□□□□ -0.54
SMARCD2-208ENST00000580054 KIF16BQ96L93 1317 aa11.65□□□□□ -0.54
SMARCD2-208ENST00000580054 FAM196BA6NMK8 535 aa11.65□□□□□ -0.54
SMARCD2-208ENST00000580054 PEX10O60683 326 aa11.65□□□□□ -0.54
SMARCD2-208ENST00000580054 ALDH1L1O75891 902 aa11.65□□□□□ -0.54
SMARCD2-208ENST00000580054 CYP2B6P20813 491 aa11.65□□□□□ -0.54
SMARCD2-208ENST00000580054 EXOSC9Q06265 439 aaKnown RBP11.65□□□□□ -0.54
SMARCD2-208ENST00000580054 PUM3Q15397 648 aaKnown RBP11.65□□□□□ -0.54
SMARCD2-208ENST00000580054 RABL6Q3YEC7 729 aaPredicted RBP11.65□□□□□ -0.54
SMARCD2-208ENST00000580054 ZSCAN29Q8IWY8 852 aaPredicted RBP11.65□□□□□ -0.54
SMARCD2-208ENST00000580054 WDR66Q8TBY9 1149 aa11.65□□□□□ -0.54
SMARCD2-208ENST00000580054 SRCIN1Q9C0H9 1055 aa11.65□□□□□ -0.54
SMARCD2-208ENST00000580054 DDX4Q9NQI0 724 aaKnown RBP11.65□□□□□ -0.54
SMARCD2-208ENST00000580054 SALL2Q9Y467 1007 aaPredicted RBP11.65□□□□□ -0.54
SMARCD2-208ENST00000580054 LRRFIP2Q9Y608 721 aaKnown RBP11.65□□□□□ -0.54
SMARCD2-208ENST00000580054 IFIT1P09914 478 aaKnown RBP11.64□□□□□ -0.55
SMARCD2-208ENST00000580054 ZNF697Q5TEC3 545 aa11.64□□□□□ -0.55
SMARCD2-208ENST00000580054 MAFAQ8NHW3 353 aaPredicted RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms