RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 MAP4K4O95819 1239 aaPredicted RBP29.17■■■□□ 2.26
SHMT1-206ENST00000579558 CNKSR2Q8WXI2 1034 aa29.17■■■□□ 2.26
SHMT1-206ENST00000579558 ZKSCAN4Q969J2 545 aaPredicted RBP29.17■■■□□ 2.26
SHMT1-206ENST00000579558 NDUFB9Q9Y6M9 179 aa29.17■■■□□ 2.26
SHMT1-206ENST00000579558 SNCAIPQ9Y6H5 919 aa29.16■■■□□ 2.26
SHMT1-206ENST00000579558 TBC1D8O95759 1140 aa29.15■■■□□ 2.26
SHMT1-206ENST00000579558 SH3BP5LQ7L8J4 393 aa29.15■■■□□ 2.26
SHMT1-206ENST00000579558 OTUD5Q96G74 571 aa29.15■■■□□ 2.26
SHMT1-206ENST00000579558 SPDYE5A6NIY4 337 aa29.14■■■□□ 2.26
SHMT1-206ENST00000579558 IDH1O75874 414 aaKnown RBP29.14■■■□□ 2.26
SHMT1-206ENST00000579558 BAG3O95817 575 aa29.14■■■□□ 2.26
SHMT1-206ENST00000579558 IFNL1Q8IU54 200 aa29.14■■■□□ 2.26
SHMT1-206ENST00000579558 TEX11Q8IYF3 940 aa29.14■■■□□ 2.26
SHMT1-206ENST00000579558 AATFQ9NY61 560 aaKnown RBP eCLIP29.14■■■□□ 2.26
SHMT1-206ENST00000579558 DDTLA6NHG4 134 aaPredicted RBP29.13■■■□□ 2.25
SHMT1-206ENST00000579558 NPM3O75607 178 aaKnown RBP29.13■■■□□ 2.25
SHMT1-206ENST00000579558 ALDH1A1P00352 501 aa29.13■■■□□ 2.25
SHMT1-206ENST00000579558 INPP5BP32019 993 aa29.13■■■□□ 2.25
SHMT1-206ENST00000579558 ERO1BQ86YB8 467 aa29.13■■■□□ 2.25
SHMT1-206ENST00000579558 LRRCC1Q9C099 1032 aa29.13■■■□□ 2.25
SHMT1-206ENST00000579558 ANTXR1Q9H6X2 564 aa29.13■■■□□ 2.25
SHMT1-206ENST00000579558 ZNF112Q9UJU3 913 aa29.13■■■□□ 2.25
SHMT1-206ENST00000579558 ATRNL1Q5VV63 1379 aa29.13■■■□□ 2.25
SHMT1-206ENST00000579558 ADGRA1Q86SQ6 560 aa29.12■■■□□ 2.25
SHMT1-206ENST00000579558 SH3RF3Q8TEJ3 882 aaPredicted RBP29.12■■■□□ 2.25
SHMT1-206ENST00000579558 IGF2BP3O00425 579 aaKnown RBP eCLIP29.11■■■□□ 2.25
SHMT1-206ENST00000579558 PLCG2P16885 1265 aa29.11■■■□□ 2.25
SHMT1-206ENST00000579558 CYP7A1P22680 504 aa29.11■■■□□ 2.25
SHMT1-206ENST00000579558 GTF2A2P52657 109 aa29.1■■■□□ 2.25
SHMT1-206ENST00000579558 PPP4CP60510 307 aa29.1■■■□□ 2.25
SHMT1-206ENST00000579558 MAP3K12Q12852 859 aa29.1■■■□□ 2.25
SHMT1-206ENST00000579558 OTUD7BQ6GQQ9 843 aa29.1■■■□□ 2.25
SHMT1-206ENST00000579558 PPIL4Q8WUA2 492 aaKnown RBP eCLIP29.1■■■□□ 2.25
SHMT1-206ENST00000579558 MS4A4AQ96JQ5 239 aa29.1■■■□□ 2.25
SHMT1-206ENST00000579558 TESPA1A2RU30 521 aaPredicted RBP29.09■■■□□ 2.25
SHMT1-206ENST00000579558 TTF1Q15361 905 aaPredicted RBP29.09■■■□□ 2.25
SHMT1-206ENST00000579558 MAGEB6Q8N7X4 407 aa29.09■■■□□ 2.25
SHMT1-206ENST00000579558 CFHR5Q9BXR6 569 aa29.09■■■□□ 2.25
SHMT1-206ENST00000579558 OSBPL5Q9H0X9 879 aaPredicted RBP29.09■■■□□ 2.25
SHMT1-206ENST00000579558 SMARCA5O60264 1052 aaPredicted RBP29.08■■■□□ 2.25
SHMT1-206ENST00000579558 NOL9Q5SY16 702 aaKnown RBP29.08■■■□□ 2.25
SHMT1-206ENST00000579558 CRBNQ96SW2 442 aa29.08■■■□□ 2.25
SHMT1-206ENST00000579558 DNAJC2Q99543 621 aaKnown RBP29.08■■■□□ 2.25
SHMT1-206ENST00000579558 DCTPP1Q9H773 170 aa29.08■■■□□ 2.25
SHMT1-206ENST00000579558 COL2A1P02458 1487 aaPredicted RBP29.08■■■□□ 2.25
SHMT1-206ENST00000579558 CCL15-CCL14A0A0B4J2E2 113 aa29.07■■■□□ 2.24
SHMT1-206ENST00000579558 PPIL2Q13356 520 aa29.07■■■□□ 2.24
SHMT1-206ENST00000579558 CCL15Q16663 113 aa29.07■■■□□ 2.24
SHMT1-206ENST00000579558 BRI3BPQ8WY22 251 aa29.07■■■□□ 2.24
SHMT1-206ENST00000579558 PTPN18Q99952 460 aa29.07■■■□□ 2.24
SHMT1-206ENST00000579558 PCDHB15Q9Y5E8 787 aa29.07■■■□□ 2.24
SHMT1-206ENST00000579558 PHF20L1A8MW92 1017 aa29.06■■■□□ 2.24
SHMT1-206ENST00000579558 GPR25O00155 361 aa29.06■■■□□ 2.24
SHMT1-206ENST00000579558 MAP3K10Q02779 954 aa29.06■■■□□ 2.24
SHMT1-206ENST00000579558 PPATQ06203 517 aa29.06■■■□□ 2.24
SHMT1-206ENST00000579558 DGKZQ13574 1117 aa29.06■■■□□ 2.24
SHMT1-206ENST00000579558 R3HDMLQ9H3Y0 253 aa29.06■■■□□ 2.24
SHMT1-206ENST00000579558 CDK5RAP2Q96SN8 1893 aa29.06■■■□□ 2.24
SHMT1-206ENST00000579558 GOLIM4O00461 696 aa29.05■■■□□ 2.24
SHMT1-206ENST00000579558 IRF6O14896 467 aa29.05■■■□□ 2.24
SHMT1-206ENST00000579558 SLURP2P0DP57 97 aa29.05■■■□□ 2.24
SHMT1-206ENST00000579558 DYNLL1P63167 89 aaKnown RBP29.05■■■□□ 2.24
SHMT1-206ENST00000579558 NOM1Q5C9Z4 860 aaKnown RBP29.05■■■□□ 2.24
SHMT1-206ENST00000579558 TMED8Q6PL24 325 aaPredicted RBP29.05■■■□□ 2.24
SHMT1-206ENST00000579558 TGFBRAP1Q8WUH2 860 aa29.05■■■□□ 2.24
SHMT1-206ENST00000579558 ZNF296Q8WUU4 475 aaPredicted RBP29.05■■■□□ 2.24
SHMT1-206ENST00000579558 FOCADQ5VW36 1801 aa29.04■■■□□ 2.24
SHMT1-206ENST00000579558 ATP5JP18859 108 aa29.04■■■□□ 2.24
SHMT1-206ENST00000579558 SNAPC2Q13487 334 aa29.04■■■□□ 2.24
SHMT1-206ENST00000579558 MAPKAPK5Q8IW41 473 aa29.04■■■□□ 2.24
SHMT1-206ENST00000579558 MIGA1Q8NAN2 632 aa29.04■■■□□ 2.24
SHMT1-206ENST00000579558 MCOLN1Q9GZU1 580 aa29.04■■■□□ 2.24
SHMT1-206ENST00000579558 BOLA2Q9H3K6 86 aa29.04■■■□□ 2.24
SHMT1-206ENST00000579558 FLT1P17948 1338 aa29.03■■■□□ 2.24
SHMT1-206ENST00000579558 CETPP11597 493 aa29.03■■■□□ 2.24
SHMT1-206ENST00000579558 SCYL3Q8IZE3 742 aa29.03■■■□□ 2.24
SHMT1-206ENST00000579558 ABHD8Q96I13 439 aa29.03■■■□□ 2.24
SHMT1-206ENST00000579558 XPO5Q9HAV4 1204 aaKnown RBP eCLIP29.03■■■□□ 2.24
SHMT1-206ENST00000579558 TBC1D12O60347 775 aa29.02■■■□□ 2.24
SHMT1-206ENST00000579558 CERS3Q8IU89 383 aa29.02■■■□□ 2.24
SHMT1-206ENST00000579558 PICK1Q9NRD5 415 aa29.02■■■□□ 2.24
SHMT1-206ENST00000579558 FAM196BA6NMK8 535 aa29.01■■■□□ 2.23
SHMT1-206ENST00000579558 EDC3Q96F86 508 aaKnown RBP29.01■■■□□ 2.23
SHMT1-206ENST00000579558 DHX36Q9H2U1 1008 aaKnown RBP29.01■■■□□ 2.23
SHMT1-206ENST00000579558 PAG1Q9NWQ8 432 aa29.01■■■□□ 2.23
SHMT1-206ENST00000579558 DOCK1Q14185 1865 aa29■■■□□ 2.23
SHMT1-206ENST00000579558 FKTNO75072 461 aa29■■■□□ 2.23
SHMT1-206ENST00000579558 PDE6AP16499 860 aa29■■■□□ 2.23
SHMT1-206ENST00000579558 CRHR2Q13324 411 aa29■■■□□ 2.23
SHMT1-206ENST00000579558 SLC9C2Q5TAH2 1124 aa29■■■□□ 2.23
SHMT1-206ENST00000579558 CTU1Q7Z7A3 348 aaKnown RBP29■■■□□ 2.23
SHMT1-206ENST00000579558 HAUS7Q99871 368 aa29■■■□□ 2.23
SHMT1-206ENST00000579558 CTNND1O60716 968 aaKnown RBP28.99■■■□□ 2.23
SHMT1-206ENST00000579558 FAM43AQ8N2R8 423 aa28.99■■■□□ 2.23
SHMT1-206ENST00000579558 PI4KBQ9UBF8 816 aa28.99■■■□□ 2.23
SHMT1-206ENST00000579558 KCNH4Q9UQ05 1017 aa28.99■■■□□ 2.23
SHMT1-206ENST00000579558 TAF1CQ15572 869 aaPredicted RBP28.98■■■□□ 2.23
SHMT1-206ENST00000579558 HERC5Q9UII4 1024 aaKnown RBP28.98■■■□□ 2.23
SHMT1-206ENST00000579558 BTBD19C9JJ37 291 aa28.97■■■□□ 2.23
SHMT1-206ENST00000579558 PTPRAP18433 802 aa28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms