RNA–Protein interactions for RNA: ENST00000579466.1

MSI2-208, Transcript of musashi RNA binding protein 2, human

TSL 3

Gene MSI2, Length 186 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSI2-208	ENST00000579466	UNC93B1	Q9H1C4	597 aa		11.98	□□□□□ -0.49
MSI2-208	ENST00000579466	RBM27	Q9P2N5	1060 aa	Known RBP	11.98	□□□□□ -0.49
MSI2-208	ENST00000579466	ABCF2	Q9UG63	623 aa		11.98	□□□□□ -0.49
MSI2-208	ENST00000579466	LRRFIP2	Q9Y608	721 aa	Known RBP	11.98	□□□□□ -0.49
MSI2-208	ENST00000579466	DOCK3	Q8IZD9	2030 aa		11.98	□□□□□ -0.49
MSI2-208	ENST00000579466	ATRNL1	Q5VV63	1379 aa		11.97	□□□□□ -0.49
MSI2-208	ENST00000579466	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.97	□□□□□ -0.49
MSI2-208	ENST00000579466	FAM196B	A6NMK8	535 aa		11.97	□□□□□ -0.49
MSI2-208	ENST00000579466	FARP2	O94887	1054 aa	Predicted RBP	11.97	□□□□□ -0.49
MSI2-208	ENST00000579466	BCR	P11274	1271 aa		11.97	□□□□□ -0.49
MSI2-208	ENST00000579466	SH3BP5L	Q7L8J4	393 aa		11.97	□□□□□ -0.49
MSI2-208	ENST00000579466	NKX2-3	Q8TAU0	364 aa		11.97	□□□□□ -0.49
MSI2-208	ENST00000579466	SMCR8	Q8TEV9	937 aa	Predicted RBP	11.97	□□□□□ -0.49
MSI2-208	ENST00000579466	CDCA7L	Q96GN5	454 aa		11.97	□□□□□ -0.49
MSI2-208	ENST00000579466	DENND2A	Q9ULE3	1009 aa		11.97	□□□□□ -0.49
MSI2-208	ENST00000579466	SZT2	Q5T011	3432 aa		11.97	□□□□□ -0.49
MSI2-208	ENST00000579466	ALPK3	Q96L96	1907 aa		11.96	□□□□□ -0.49
MSI2-208	ENST00000579466	DDTL	A6NHG4	134 aa	Predicted RBP	11.96	□□□□□ -0.49
MSI2-208	ENST00000579466		E9PSI1	815 aa		11.96	□□□□□ -0.49
MSI2-208	ENST00000579466	TNPO2	O14787	897 aa	Known RBP	11.96	□□□□□ -0.49
MSI2-208	ENST00000579466	ADCY3	O60266	1144 aa		11.96	□□□□□ -0.49
MSI2-208	ENST00000579466	GJB1	P08034	283 aa		11.96	□□□□□ -0.49
MSI2-208	ENST00000579466	PTPRA	P18433	802 aa		11.96	□□□□□ -0.49
MSI2-208	ENST00000579466	BTD	P43251	543 aa		11.96	□□□□□ -0.49
MSI2-208	ENST00000579466	GJA8	P48165	433 aa		11.96	□□□□□ -0.49
MSI2-208	ENST00000579466	FLT3LG	P49771	235 aa		11.96	□□□□□ -0.49
MSI2-208	ENST00000579466	RASGRF1	Q13972	1273 aa		11.96	□□□□□ -0.49
MSI2-208	ENST00000579466	CCDC102B	Q68D86	513 aa		11.96	□□□□□ -0.49
MSI2-208	ENST00000579466	U2AF1L4	Q8WU68	220 aa	Known RBP	11.96	□□□□□ -0.49
MSI2-208	ENST00000579466	HTATIP2	Q9BUP3	242 aa		11.96	□□□□□ -0.49
MSI2-208	ENST00000579466	DDX4	Q9NQI0	724 aa	Known RBP	11.96	□□□□□ -0.49
MSI2-208	ENST00000579466	RFX7	Q2KHR2	1363 aa		11.95	□□□□□ -0.5
MSI2-208	ENST00000579466	SALL1	Q9NSC2	1324 aa		11.95	□□□□□ -0.5
MSI2-208	ENST00000579466		A0A0G2JLL6	359 aa	Predicted RBP	11.95	□□□□□ -0.5
MSI2-208	ENST00000579466	PHF20L1	A8MW92	1017 aa		11.95	□□□□□ -0.5
MSI2-208	ENST00000579466	CXCL11	O14625	94 aa		11.95	□□□□□ -0.5
MSI2-208	ENST00000579466	CIAO1	O76071	339 aa		11.95	□□□□□ -0.5
MSI2-208	ENST00000579466	INHA	P05111	366 aa		11.95	□□□□□ -0.5
MSI2-208	ENST00000579466	IL15	P40933	162 aa	Predicted RBP	11.95	□□□□□ -0.5
MSI2-208	ENST00000579466	FASTKD5	Q7L8L6	764 aa	Known RBP	11.95	□□□□□ -0.5
MSI2-208	ENST00000579466	PRRT2	Q7Z6L0	340 aa	Predicted RBP	11.95	□□□□□ -0.5
MSI2-208	ENST00000579466	SLAIN1	Q8ND83	568 aa		11.95	□□□□□ -0.5
MSI2-208	ENST00000579466	RANBP2	P49792	3224 aa	Known RBP	11.94	□□□□□ -0.5
MSI2-208	ENST00000579466	GAK	O14976	1311 aa		11.94	□□□□□ -0.5
MSI2-208	ENST00000579466	SEMA3E	O15041	775 aa		11.94	□□□□□ -0.5
MSI2-208	ENST00000579466	ENTPD3	O75355	529 aa		11.94	□□□□□ -0.5
MSI2-208	ENST00000579466	TIMM10	P62072	90 aa		11.94	□□□□□ -0.5
MSI2-208	ENST00000579466	SLFN5	Q08AF3	891 aa		11.94	□□□□□ -0.5
MSI2-208	ENST00000579466	ALDH1L2	Q3SY69	923 aa		11.94	□□□□□ -0.5
MSI2-208	ENST00000579466	ZGPAT	Q8N5A5	531 aa	Known RBP	11.94	□□□□□ -0.5
MSI2-208	ENST00000579466	ANKRD13C	Q8N6S4	541 aa		11.94	□□□□□ -0.5
MSI2-208	ENST00000579466	DEFB118	Q96PH6	123 aa		11.94	□□□□□ -0.5
MSI2-208	ENST00000579466	MEIS3	Q99687	375 aa		11.94	□□□□□ -0.5
MSI2-208	ENST00000579466	IDI2	Q9BXS1	227 aa		11.94	□□□□□ -0.5
MSI2-208	ENST00000579466	NOB1	Q9ULX3	412 aa	Known RBP	11.94	□□□□□ -0.5
MSI2-208	ENST00000579466	AFG3L2	Q9Y4W6	797 aa		11.94	□□□□□ -0.5
MSI2-208	ENST00000579466	LOC285556	D6RIA3	1793 aa		11.94	□□□□□ -0.5
MSI2-208	ENST00000579466	MROH7-TTC4	A0A0A0MT08	1334 aa		11.93	□□□□□ -0.5
MSI2-208	ENST00000579466	TFRC	P02786	760 aa	Known RBP	11.93	□□□□□ -0.5
MSI2-208	ENST00000579466	TREML2	Q5T2D2	321 aa		11.93	□□□□□ -0.5
MSI2-208	ENST00000579466	PI16	Q6UXB8	463 aa		11.93	□□□□□ -0.5
MSI2-208	ENST00000579466	UBE2Q1	Q7Z7E8	422 aa		11.93	□□□□□ -0.5
MSI2-208	ENST00000579466	FBXO3	Q9UK99	471 aa		11.93	□□□□□ -0.5
MSI2-208	ENST00000579466		A0A1B0GUL7	405 aa		11.92	□□□□□ -0.5
MSI2-208	ENST00000579466	EVI5	O60447	810 aa		11.92	□□□□□ -0.5
MSI2-208	ENST00000579466	CTNND1	O60716	968 aa	Known RBP	11.92	□□□□□ -0.5
MSI2-208	ENST00000579466	SGPL1	O95470	568 aa		11.92	□□□□□ -0.5
MSI2-208	ENST00000579466	MECOM	Q03112	1051 aa		11.92	□□□□□ -0.5
MSI2-208	ENST00000579466	TFCP2	Q12800	502 aa		11.92	□□□□□ -0.5
MSI2-208	ENST00000579466	ERICH6	Q7L0X2	663 aa		11.92	□□□□□ -0.5
MSI2-208	ENST00000579466	SLF2	Q8IX21	1173 aa		11.92	□□□□□ -0.5
MSI2-208	ENST00000579466	XAGE2	Q96GT9	111 aa		11.92	□□□□□ -0.5
MSI2-208	ENST00000579466	NEUROD6	Q96NK8	337 aa		11.92	□□□□□ -0.5
MSI2-208	ENST00000579466	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	11.92	□□□□□ -0.5
MSI2-208	ENST00000579466	NR2E3	Q9Y5X4	410 aa		11.92	□□□□□ -0.5
MSI2-208	ENST00000579466	ZBTB7B	O15156	539 aa	Predicted RBP	11.91	□□□□□ -0.5
MSI2-208	ENST00000579466	SPTY2D1	Q68D10	685 aa	Predicted RBP	11.91	□□□□□ -0.5
MSI2-208	ENST00000579466	TBC1D9	Q6ZT07	1266 aa		11.91	□□□□□ -0.5
MSI2-208	ENST00000579466	DIS3L	Q8TF46	1054 aa	Known RBP	11.91	□□□□□ -0.5
MSI2-208	ENST00000579466	COA7	Q96BR5	231 aa		11.91	□□□□□ -0.5
MSI2-208	ENST00000579466	COPRS	Q9NQ92	184 aa		11.91	□□□□□ -0.5
MSI2-208	ENST00000579466	RAI14	Q9P0K7	980 aa		11.91	□□□□□ -0.5
MSI2-208	ENST00000579466	AGTPBP1	Q9UPW5	1226 aa		11.91	□□□□□ -0.5
MSI2-208	ENST00000579466	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	11.91	□□□□□ -0.5
MSI2-208	ENST00000579466	DDX60L	Q5H9U9	1706 aa	Known RBP	11.91	□□□□□ -0.5
MSI2-208	ENST00000579466	SIPA1L1	O43166	1804 aa		11.9	□□□□□ -0.5
MSI2-208	ENST00000579466	SRGAP3	O43295	1099 aa		11.9	□□□□□ -0.5
MSI2-208	ENST00000579466	HMGCS2	P54868	508 aa		11.9	□□□□□ -0.5
MSI2-208	ENST00000579466	RHBDL3	P58872	404 aa		11.9	□□□□□ -0.5
MSI2-208	ENST00000579466	SPP2	Q13103	211 aa		11.9	□□□□□ -0.5
MSI2-208	ENST00000579466	MVP	Q14764	893 aa	Known RBP	11.9	□□□□□ -0.5
MSI2-208	ENST00000579466	GORAB	Q5T7V8	394 aa		11.9	□□□□□ -0.5
MSI2-208	ENST00000579466	ZNF384	Q8TF68	577 aa		11.9	□□□□□ -0.5
MSI2-208	ENST00000579466	PAWR	Q96IZ0	340 aa	Known RBP	11.9	□□□□□ -0.5
MSI2-208	ENST00000579466	CDK5RAP2	Q96SN8	1893 aa		11.9	□□□□□ -0.5
MSI2-208	ENST00000579466	API5	Q9BZZ5	524 aa	Known RBP	11.9	□□□□□ -0.5
MSI2-208	ENST00000579466	PNMA3	Q9UL41	463 aa		11.9	□□□□□ -0.5
MSI2-208	ENST00000579466	MAST2	Q6P0Q8	1798 aa		11.9	□□□□□ -0.51
MSI2-208	ENST00000579466	MYO5A	Q9Y4I1	1855 aa	Known RBP	11.89	□□□□□ -0.51
MSI2-208	ENST00000579466	PLXNB2	O15031	1838 aa		11.89	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 21 ms