RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 ERO1BQ86YB8 467 aa18.12■□□□□ 0.49
SS18-212ENST00000579061 ZFPM1Q8IX07 1006 aa18.12■□□□□ 0.49
SS18-212ENST00000579061 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.12■□□□□ 0.49
SS18-212ENST00000579061 NOL10Q9BSC4 688 aaKnown RBP18.12■□□□□ 0.49
SS18-212ENST00000579061 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.12■□□□□ 0.49
SS18-212ENST00000579061 SNCAIPQ9Y6H5 919 aa18.12■□□□□ 0.49
SS18-212ENST00000579061 SPDYE5A6NIY4 337 aa18.11■□□□□ 0.49
SS18-212ENST00000579061 IFIT2P09913 472 aaKnown RBP18.11■□□□□ 0.49
SS18-212ENST00000579061 PLCG2P16885 1265 aa18.11■□□□□ 0.49
SS18-212ENST00000579061 IFNL1Q8IU54 200 aa18.11■□□□□ 0.49
SS18-212ENST00000579061 DDX4Q9NQI0 724 aaKnown RBP18.11■□□□□ 0.49
SS18-212ENST00000579061 PIH1D3Q9NQM4 214 aaKnown RBP18.11■□□□□ 0.49
SS18-212ENST00000579061 ATRNL1Q5VV63 1379 aa18.11■□□□□ 0.49
SS18-212ENST00000579061 COL2A1P02458 1487 aaPredicted RBP18.11■□□□□ 0.49
SS18-212ENST00000579061 CDK5RAP2Q96SN8 1893 aa18.11■□□□□ 0.49
SS18-212ENST00000579061 FOCADQ5VW36 1801 aa18.1■□□□□ 0.49
SS18-212ENST00000579061 APBB1O00213 710 aa18.1■□□□□ 0.49
SS18-212ENST00000579061 GTF2A2P52657 109 aa18.1■□□□□ 0.49
SS18-212ENST00000579061 NOL9Q5SY16 702 aaKnown RBP18.1■□□□□ 0.49
SS18-212ENST00000579061 OTUD7BQ6GQQ9 843 aa18.1■□□□□ 0.49
SS18-212ENST00000579061 CERS3Q8IU89 383 aa18.1■□□□□ 0.49
SS18-212ENST00000579061 MS4A4AQ96JQ5 239 aa18.1■□□□□ 0.49
SS18-212ENST00000579061 DDTLA6NHG4 134 aaPredicted RBP18.09■□□□□ 0.49
SS18-212ENST00000579061 PICALMQ13492 652 aa18.09■□□□□ 0.49
SS18-212ENST00000579061 TTF1Q15361 905 aaPredicted RBP18.09■□□□□ 0.49
SS18-212ENST00000579061 SH3BP5LQ7L8J4 393 aa18.09■□□□□ 0.49
SS18-212ENST00000579061 ZSCAN29Q8IWY8 852 aaPredicted RBP18.09■□□□□ 0.49
SS18-212ENST00000579061 ZKSCAN4Q969J2 545 aaPredicted RBP18.09■□□□□ 0.49
SS18-212ENST00000579061 LRRCC1Q9C099 1032 aa18.09■□□□□ 0.49
SS18-212ENST00000579061 IGF2BP3O00425 579 aaKnown RBP eCLIP18.08■□□□□ 0.48
SS18-212ENST00000579061 TBC1D12O60347 775 aa18.08■□□□□ 0.48
SS18-212ENST00000579061 TBC1D8O95759 1140 aa18.08■□□□□ 0.48
SS18-212ENST00000579061 INPP5BP32019 993 aa18.08■□□□□ 0.48
SS18-212ENST00000579061 PPATQ06203 517 aa18.08■□□□□ 0.48
SS18-212ENST00000579061 MAP3K12Q12852 859 aa18.08■□□□□ 0.48
SS18-212ENST00000579061 PPIL2Q13356 520 aa18.08■□□□□ 0.48
SS18-212ENST00000579061 TEX11Q8IYF3 940 aa18.08■□□□□ 0.48
SS18-212ENST00000579061 CNKSR2Q8WXI2 1034 aa18.08■□□□□ 0.48
SS18-212ENST00000579061 OTUD5Q96G74 571 aa18.08■□□□□ 0.48
SS18-212ENST00000579061 DCTPP1Q9H773 170 aa18.08■□□□□ 0.48
SS18-212ENST00000579061 AATFQ9NY61 560 aaKnown RBP eCLIP18.08■□□□□ 0.48
SS18-212ENST00000579061 GPR25O00155 361 aa18.07■□□□□ 0.48
SS18-212ENST00000579061 IDH1O75874 414 aaKnown RBP18.07■□□□□ 0.48
SS18-212ENST00000579061 CYP7A1P22680 504 aa18.07■□□□□ 0.48
SS18-212ENST00000579061 ADGRA1Q86SQ6 560 aa18.07■□□□□ 0.48
SS18-212ENST00000579061 SH3RF3Q8TEJ3 882 aaPredicted RBP18.07■□□□□ 0.48
SS18-212ENST00000579061 OSBPL5Q9H0X9 879 aaPredicted RBP18.07■□□□□ 0.48
SS18-212ENST00000579061 ANTXR1Q9H6X2 564 aa18.07■□□□□ 0.48
SS18-212ENST00000579061 PHF20L1A8MW92 1017 aa18.06■□□□□ 0.48
SS18-212ENST00000579061 PTPN18Q99952 460 aa18.06■□□□□ 0.48
SS18-212ENST00000579061 NDUFB9Q9Y6M9 179 aa18.06■□□□□ 0.48
SS18-212ENST00000579061 DOCK1Q14185 1865 aa18.05■□□□□ 0.48
SS18-212ENST00000579061 CCL15-CCL14A0A0B4J2E2 113 aa18.05■□□□□ 0.48
SS18-212ENST00000579061 IRF6O14896 467 aa18.05■□□□□ 0.48
SS18-212ENST00000579061 CETPP11597 493 aa18.05■□□□□ 0.48
SS18-212ENST00000579061 ATP5JP18859 108 aa18.05■□□□□ 0.48
SS18-212ENST00000579061 SNAPC2Q13487 334 aa18.05■□□□□ 0.48
SS18-212ENST00000579061 CCL15Q16663 113 aa18.05■□□□□ 0.48
SS18-212ENST00000579061 MAGEB6Q8N7X4 407 aa18.05■□□□□ 0.48
SS18-212ENST00000579061 BRI3BPQ8WY22 251 aa18.05■□□□□ 0.48
SS18-212ENST00000579061 DHX36Q9H2U1 1008 aaKnown RBP18.05■□□□□ 0.48
SS18-212ENST00000579061 ZCCHC17Q9NP64 241 aaKnown RBP18.05■□□□□ 0.48
SS18-212ENST00000579061 CTNND1O60716 968 aaKnown RBP18.04■□□□□ 0.48
SS18-212ENST00000579061 DGKZQ13574 1117 aa18.04■□□□□ 0.48
SS18-212ENST00000579061 SCYL3Q8IZE3 742 aa18.04■□□□□ 0.48
SS18-212ENST00000579061 ZNF296Q8WUU4 475 aaPredicted RBP18.04■□□□□ 0.48
SS18-212ENST00000579061 KCNH4Q9UQ05 1017 aa18.04■□□□□ 0.48
SS18-212ENST00000579061 PCDHB15Q9Y5E8 787 aa18.04■□□□□ 0.48
SS18-212ENST00000579061 FKTNO75072 461 aa18.03■□□□□ 0.48
SS18-212ENST00000579061 AAMPQ13685 434 aa18.03■□□□□ 0.48
SS18-212ENST00000579061 CTU1Q7Z7A3 348 aaKnown RBP18.03■□□□□ 0.48
SS18-212ENST00000579061 TGFBRAP1Q8WUH2 860 aa18.03■□□□□ 0.48
SS18-212ENST00000579061 ABHD8Q96I13 439 aa18.03■□□□□ 0.48
SS18-212ENST00000579061 MCOLN1Q9GZU1 580 aa18.03■□□□□ 0.48
SS18-212ENST00000579061 R3HDMLQ9H3Y0 253 aa18.03■□□□□ 0.48
SS18-212ENST00000579061 HERC5Q9UII4 1024 aaKnown RBP18.03■□□□□ 0.48
SS18-212ENST00000579061 MYH1P12882 1939 aa18.03■□□□□ 0.48
SS18-212ENST00000579061 SIPA1L1O43166 1804 aa18.02■□□□□ 0.48
SS18-212ENST00000579061 FLT1P17948 1338 aa18.02■□□□□ 0.48
SS18-212ENST00000579061 MYH7P12883 1935 aa18.02■□□□□ 0.48
SS18-212ENST00000579061 GOLIM4O00461 696 aa18.02■□□□□ 0.48
SS18-212ENST00000579061 DYNLL1P63167 89 aaKnown RBP18.02■□□□□ 0.48
SS18-212ENST00000579061 CRBNQ96SW2 442 aa18.02■□□□□ 0.48
SS18-212ENST00000579061 DNAJC2Q99543 621 aaKnown RBP18.02■□□□□ 0.48
SS18-212ENST00000579061 HAUS7Q99871 368 aa18.02■□□□□ 0.48
SS18-212ENST00000579061 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.02■□□□□ 0.48
SS18-212ENST00000579061 PICK1Q9NRD5 415 aa18.02■□□□□ 0.48
SS18-212ENST00000579061 PAG1Q9NWQ8 432 aa18.02■□□□□ 0.48
SS18-212ENST00000579061 PI4KBQ9UBF8 816 aa18.02■□□□□ 0.48
SS18-212ENST00000579061 PHIPQ8WWQ0 1821 aa18.02■□□□□ 0.47
SS18-212ENST00000579061 ATAD5Q96QE3 1844 aa18.01■□□□□ 0.47
SS18-212ENST00000579061 CXCL11O14625 94 aa18.01■□□□□ 0.47
SS18-212ENST00000579061 SMARCA5O60264 1052 aaPredicted RBP18.01■□□□□ 0.47
SS18-212ENST00000579061 CRHR2Q13324 411 aa18.01■□□□□ 0.47
SS18-212ENST00000579061 METTL16Q86W50 562 aaKnown RBP18.01■□□□□ 0.47
SS18-212ENST00000579061 FOXP4Q8IVH2 680 aaPredicted RBP18.01■□□□□ 0.47
SS18-212ENST00000579061 MAPKAPK5Q8IW41 473 aa18.01■□□□□ 0.47
SS18-212ENST00000579061 BOLA2Q9H3K6 86 aa18.01■□□□□ 0.47
SS18-212ENST00000579061 PTPRFP10586 1907 aa18■□□□□ 0.47
SS18-212ENST00000579061 PDE6AP16499 860 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms