RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 SCARA3Q6AZY7 606 aa5.67□□□□□ -1.5
NUP88-209ENST00000574855 DTX1Q86Y01 620 aa5.67□□□□□ -1.5
NUP88-209ENST00000574855 SMYD4Q8IYR2 804 aaPredicted RBP5.67□□□□□ -1.5
NUP88-209ENST00000574855 SHISA5Q8N114 240 aa5.67□□□□□ -1.5
NUP88-209ENST00000574855 GPBAR1Q8TDU6 330 aa5.67□□□□□ -1.5
NUP88-209ENST00000574855 GATA6Q92908 595 aa5.67□□□□□ -1.5
NUP88-209ENST00000574855 DUSP9Q99956 384 aaKnown RBP5.67□□□□□ -1.5
NUP88-209ENST00000574855 C1GALT1Q9NS00 363 aa5.67□□□□□ -1.5
NUP88-209ENST00000574855 CYP8B1Q9UNU6 501 aa5.67□□□□□ -1.5
NUP88-209ENST00000574855 PCDHGC5Q9Y5F6 944 aa5.67□□□□□ -1.5
NUP88-209ENST00000574855 FAM170BA6NMN3 283 aa5.66□□□□□ -1.5
NUP88-209ENST00000574855 CYP26A1O43174 497 aa5.66□□□□□ -1.5
NUP88-209ENST00000574855 DYNC1LI2O43237 492 aaPredicted RBP5.66□□□□□ -1.5
NUP88-209ENST00000574855 PAGE1O75459 146 aa5.66□□□□□ -1.5
NUP88-209ENST00000574855 TRIM37O94972 964 aa5.66□□□□□ -1.5
NUP88-209ENST00000574855 HOXA10P31260 410 aaPredicted RBP5.66□□□□□ -1.5
NUP88-209ENST00000574855 TTLL4Q14679 1199 aa5.66□□□□□ -1.5
NUP88-209ENST00000574855 LLGL2Q6P1M3 1020 aa5.66□□□□□ -1.5
NUP88-209ENST00000574855 OGFOD3Q6PK18 319 aa5.66□□□□□ -1.5
NUP88-209ENST00000574855 SEZ6L2Q6UXD5 910 aa5.66□□□□□ -1.5
NUP88-209ENST00000574855 SV2BQ7L1I2 683 aa5.66□□□□□ -1.5
NUP88-209ENST00000574855 NPM2Q86SE8 214 aaKnown RBP5.66□□□□□ -1.5
NUP88-209ENST00000574855 GRIN3AQ8TCU5 1115 aa5.66□□□□□ -1.5
NUP88-209ENST00000574855 KRTAP4-7Q9BYR0 210 aa5.66□□□□□ -1.5
NUP88-209ENST00000574855 GZF1Q9H116 711 aaPredicted RBP5.66□□□□□ -1.5
NUP88-209ENST00000574855 SSU72Q9NP77 194 aaKnown RBP5.66□□□□□ -1.5
NUP88-209ENST00000574855 CACNA2D2Q9NY47 1150 aa5.66□□□□□ -1.5
NUP88-209ENST00000574855 PCOLCE2Q9UKZ9 415 aa5.66□□□□□ -1.5
NUP88-209ENST00000574855 TTF2Q9UNY4 1162 aaKnown RBP5.66□□□□□ -1.5
NUP88-209ENST00000574855 HCLS1P14317 486 aaPredicted RBP5.65□□□□□ -1.5
NUP88-209ENST00000574855 ERCC3P19447 782 aa5.65□□□□□ -1.5
NUP88-209ENST00000574855 SPINK2P20155 84 aa5.65□□□□□ -1.5
NUP88-209ENST00000574855 ERVK-24P63145 666 aa5.65□□□□□ -1.5
NUP88-209ENST00000574855 PCNX4Q63HM2 1172 aa5.65□□□□□ -1.5
NUP88-209ENST00000574855 MPRIPQ6WCQ1 1025 aa5.65□□□□□ -1.5
NUP88-209ENST00000574855 DNAJC14Q6Y2X3 702 aaPredicted RBP5.65□□□□□ -1.5
NUP88-209ENST00000574855 ZNF765Q7L2R6 523 aa5.65□□□□□ -1.5
NUP88-209ENST00000574855 RNF214Q8ND24 703 aa5.65□□□□□ -1.5
NUP88-209ENST00000574855 TTBK1Q5TCY1 1321 aaPredicted RBP5.65□□□□□ -1.51
NUP88-209ENST00000574855 WNT11O96014 354 aa5.64□□□□□ -1.51
NUP88-209ENST00000574855 CELA3AP09093 270 aa5.64□□□□□ -1.51
NUP88-209ENST00000574855 XPCQ01831 940 aaPredicted RBP5.64□□□□□ -1.51
NUP88-209ENST00000574855 CCDC27Q2M243 656 aa5.64□□□□□ -1.51
NUP88-209ENST00000574855 CYP27C1Q4G0S4 372 aa5.64□□□□□ -1.51
NUP88-209ENST00000574855 NPAS4Q8IUM7 802 aa5.64□□□□□ -1.51
NUP88-209ENST00000574855 PICK1Q9NRD5 415 aa5.64□□□□□ -1.51
NUP88-209ENST00000574855 PCDHA4Q9UN74 947 aa5.64□□□□□ -1.51
NUP88-209ENST00000574855 PSMD2Q13200 908 aa5.63□□□□□ -1.51
NUP88-209ENST00000574855 CDK5R2Q13319 367 aa5.63□□□□□ -1.51
NUP88-209ENST00000574855 CCDC85BQ15834 202 aaPredicted RBP5.63□□□□□ -1.51
NUP88-209ENST00000574855 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.63□□□□□ -1.51
NUP88-209ENST00000574855 LRRC4CQ9HCJ2 640 aa5.63□□□□□ -1.51
NUP88-209ENST00000574855 PARP2Q9UGN5 583 aa5.63□□□□□ -1.51
NUP88-209ENST00000574855 NEFMP07197 916 aa5.62□□□□□ -1.51
NUP88-209ENST00000574855 LMNB1P20700 586 aa5.62□□□□□ -1.51
NUP88-209ENST00000574855 GP2P55259 537 aaKnown RBP5.62□□□□□ -1.51
NUP88-209ENST00000574855 DAB2P98082 770 aa5.62□□□□□ -1.51
NUP88-209ENST00000574855 MSMPQ1L6U9 139 aa5.62□□□□□ -1.51
NUP88-209ENST00000574855 RASIP1Q5U651 963 aa5.62□□□□□ -1.51
NUP88-209ENST00000574855 TTBK2Q6IQ55 1244 aa5.62□□□□□ -1.51
NUP88-209ENST00000574855 CDC37L1Q7L3B6 337 aa5.62□□□□□ -1.51
NUP88-209ENST00000574855 C12orf40Q86WS4 652 aa5.62□□□□□ -1.51
NUP88-209ENST00000574855 ISL2Q96A47 359 aa5.62□□□□□ -1.51
NUP88-209ENST00000574855 ELMO3Q96BJ8 720 aa5.62□□□□□ -1.51
NUP88-209ENST00000574855 RNF19AQ9NV58 838 aa5.62□□□□□ -1.51
NUP88-209ENST00000574855 BSDC1Q9NW68 430 aaPredicted RBP5.62□□□□□ -1.51
NUP88-209ENST00000574855 ANGEL1Q9UNK9 670 aaKnown RBP5.62□□□□□ -1.51
NUP88-209ENST00000574855 DCDC2CA8MYV0 355 aa5.61□□□□□ -1.51
NUP88-209ENST00000574855 FANCGO15287 622 aa5.61□□□□□ -1.51
NUP88-209ENST00000574855 ADAMTS4O75173 837 aa5.61□□□□□ -1.51
NUP88-209ENST00000574855 FAM87AP0C7U9 286 aa5.61□□□□□ -1.51
NUP88-209ENST00000574855 ITGAEP38570 1179 aa5.61□□□□□ -1.51
NUP88-209ENST00000574855 RPS26P62854 115 aaKnown RBP5.61□□□□□ -1.51
NUP88-209ENST00000574855 RING1Q06587 406 aa5.61□□□□□ -1.51
NUP88-209ENST00000574855 PPM1JQ5JR12 505 aa5.61□□□□□ -1.51
NUP88-209ENST00000574855 TMC4Q7Z404 712 aa5.61□□□□□ -1.51
NUP88-209ENST00000574855 CSADQ9Y600 493 aa5.61□□□□□ -1.51
NUP88-209ENST00000574855 PRNPP04156 253 aa5.6□□□□□ -1.51
NUP88-209ENST00000574855 RLBP1P12271 317 aa5.6□□□□□ -1.51
NUP88-209ENST00000574855 TRIM26Q12899 539 aaPredicted RBP5.6□□□□□ -1.51
NUP88-209ENST00000574855 TAF1CQ15572 869 aaPredicted RBP5.6□□□□□ -1.51
NUP88-209ENST00000574855 ZBTB37Q5TC79 503 aa5.6□□□□□ -1.51
NUP88-209ENST00000574855 HDXQ7Z353 690 aa5.6□□□□□ -1.51
NUP88-209ENST00000574855 FBXO33Q7Z6M2 555 aa5.6□□□□□ -1.51
NUP88-209ENST00000574855 KCT2Q8NC54 265 aa5.6□□□□□ -1.51
NUP88-209ENST00000574855 CCDC39Q9UFE4 941 aa5.6□□□□□ -1.51
NUP88-209ENST00000574855 ZC3H7BQ9UGR2 993 aaKnown RBP5.6□□□□□ -1.51
NUP88-209ENST00000574855 OAS3Q9Y6K5 1087 aaKnown RBP5.6□□□□□ -1.51
NUP88-209ENST00000574855 PTPN11Q06124 597 aaPredicted RBP5.59□□□□□ -1.51
NUP88-209ENST00000574855 INPP5AQ14642 412 aa5.59□□□□□ -1.51
NUP88-209ENST00000574855 ZNF507Q8TCN5 953 aa5.59□□□□□ -1.51
NUP88-209ENST00000574855 DUSP23Q9BVJ7 150 aa5.59□□□□□ -1.51
NUP88-209ENST00000574855 MRS2Q9HD23 443 aa5.59□□□□□ -1.51
NUP88-209ENST00000574855 SNCAIPQ9Y6H5 919 aa5.59□□□□□ -1.51
NUP88-209ENST00000574855 SORBS3O60504 671 aa5.58□□□□□ -1.52
NUP88-209ENST00000574855 LEFTY1O75610 366 aa5.58□□□□□ -1.52
NUP88-209ENST00000574855 NTF4P34130 210 aa5.58□□□□□ -1.52
NUP88-209ENST00000574855 ST13P50502 369 aaKnown RBP5.58□□□□□ -1.52
NUP88-209ENST00000574855 IRAK1P51617 712 aa5.58□□□□□ -1.52
NUP88-209ENST00000574855 MAP3K11Q16584 847 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms