RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 PRKAB2O43741 272 aa11.7□□□□□ -0.54
SMG6-213ENST00000573166 SSBP05455 408 aaKnown RBP eCLIP11.7□□□□□ -0.54
SMG6-213ENST00000573166 MSNP26038 577 aaKnown RBP11.7□□□□□ -0.54
SMG6-213ENST00000573166 LCORLQ8N3X6 602 aa11.7□□□□□ -0.54
SMG6-213ENST00000573166 FAM13BQ9NYF5 915 aa11.7□□□□□ -0.54
SMG6-213ENST00000573166 CEP131Q9UPN4 1083 aa11.7□□□□□ -0.54
SMG6-213ENST00000573166 PARP1P09874 1014 aaKnown RBP11.7□□□□□ -0.54
SMG6-213ENST00000573166 RBM25P49756 843 aaKnown RBP11.7□□□□□ -0.54
SMG6-213ENST00000573166 DCAF15Q66K64 600 aa11.7□□□□□ -0.54
SMG6-213ENST00000573166 GPCPD1Q9NPB8 672 aa11.7□□□□□ -0.54
SMG6-213ENST00000573166 PEAK1Q9H792 1746 aa11.69□□□□□ -0.54
SMG6-213ENST00000573166 RFX5P48382 616 aaPredicted RBP11.69□□□□□ -0.54
SMG6-213ENST00000573166 CSRNP1Q96S65 589 aa11.69□□□□□ -0.54
SMG6-213ENST00000573166 POLRMTO00411 1230 aaKnown RBP11.69□□□□□ -0.54
SMG6-213ENST00000573166 NAPAP54920 295 aa11.69□□□□□ -0.54
SMG6-213ENST00000573166 SCARF1Q14162 830 aa11.69□□□□□ -0.54
SMG6-213ENST00000573166 CAVIN1Q6NZI2 390 aaKnown RBP11.69□□□□□ -0.54
SMG6-213ENST00000573166 TFIP11Q9UBB9 837 aaKnown RBP11.69□□□□□ -0.54
SMG6-213ENST00000573166 M0R2C6 588 aa11.69□□□□□ -0.54
SMG6-213ENST00000573166 PPP1R12BO60237 982 aaPredicted RBP11.69□□□□□ -0.54
SMG6-213ENST00000573166 RRP36Q96EU6 259 aaKnown RBP11.69□□□□□ -0.54
SMG6-213ENST00000573166 RBM27Q9P2N5 1060 aaKnown RBP11.69□□□□□ -0.54
SMG6-213ENST00000573166 CLIP2Q9UDT6 1046 aa11.69□□□□□ -0.54
SMG6-213ENST00000573166 PALD1Q9ULE6 856 aa11.69□□□□□ -0.54
SMG6-213ENST00000573166 CSADQ9Y600 493 aa11.69□□□□□ -0.54
SMG6-213ENST00000573166 TOPAZ1Q8N9V7 1692 aa11.69□□□□□ -0.54
SMG6-213ENST00000573166 ECM2O94769 699 aaPredicted RBP11.68□□□□□ -0.54
SMG6-213ENST00000573166 SLC1A4P43007 532 aa11.68□□□□□ -0.54
SMG6-213ENST00000573166 DDR1Q08345 913 aa11.68□□□□□ -0.54
SMG6-213ENST00000573166 CCDC148Q8NFR7 591 aa11.68□□□□□ -0.54
SMG6-213ENST00000573166 MYL10Q9BUA6 226 aa11.68□□□□□ -0.54
SMG6-213ENST00000573166 ZHX3Q9H4I2 956 aa11.68□□□□□ -0.54
SMG6-213ENST00000573166 EHMT1Q9H9B1 1298 aa11.68□□□□□ -0.54
SMG6-213ENST00000573166 EPB41L2O43491 1005 aaKnown RBP11.68□□□□□ -0.54
SMG6-213ENST00000573166 SRGNP10124 158 aa11.68□□□□□ -0.54
SMG6-213ENST00000573166 CFAP100Q494V2 611 aa11.68□□□□□ -0.54
SMG6-213ENST00000573166 SLFNL1Q499Z3 407 aa11.68□□□□□ -0.54
SMG6-213ENST00000573166 CERKLQ49MI3 558 aaPredicted RBP11.68□□□□□ -0.54
SMG6-213ENST00000573166 TMOD4Q9NZQ9 345 aa11.68□□□□□ -0.54
SMG6-213ENST00000573166 TRAK2O60296 914 aa11.68□□□□□ -0.54
SMG6-213ENST00000573166 MAP4K1Q92918 833 aa11.68□□□□□ -0.54
SMG6-213ENST00000573166 SNX21Q969T3 373 aa11.68□□□□□ -0.54
SMG6-213ENST00000573166 PANK2Q9BZ23 570 aa11.68□□□□□ -0.54
SMG6-213ENST00000573166 AHDC1Q5TGY3 1603 aaPredicted RBP11.68□□□□□ -0.54
SMG6-213ENST00000573166 ONECUT3O60422 494 aaPredicted RBP11.68□□□□□ -0.54
SMG6-213ENST00000573166 SCAND2PQ9GZW5 306 aaPredicted RBP11.68□□□□□ -0.54
SMG6-213ENST00000573166 PTPDC1A2A3K4 754 aa11.67□□□□□ -0.54
SMG6-213ENST00000573166 CACNB3P54284 484 aa11.67□□□□□ -0.54
SMG6-213ENST00000573166 TBC1D10BQ4KMP7 808 aaPredicted RBP11.67□□□□□ -0.54
SMG6-213ENST00000573166 NCOA5Q9HCD5 579 aaKnown RBP11.67□□□□□ -0.54
SMG6-213ENST00000573166 MYO3BQ8WXR4 1341 aa11.67□□□□□ -0.54
SMG6-213ENST00000573166 CRKP46108 304 aa11.67□□□□□ -0.54
SMG6-213ENST00000573166 TANGO6Q9C0B7 1094 aa11.67□□□□□ -0.54
SMG6-213ENST00000573166 SERPINB13Q9UIV8 391 aa11.67□□□□□ -0.54
SMG6-213ENST00000573166 ZNRF3Q9ULT6 936 aa11.67□□□□□ -0.54
SMG6-213ENST00000573166 RGL2O15211 777 aa11.67□□□□□ -0.54
SMG6-213ENST00000573166 TDRD3Q9H7E2 651 aaKnown RBP11.67□□□□□ -0.54
SMG6-213ENST00000573166 STRCQ7RTU9 1775 aa11.66□□□□□ -0.54
SMG6-213ENST00000573166 C3orf67Q6ZVT6 689 aa11.66□□□□□ -0.54
SMG6-213ENST00000573166 ANKRD20A12PQ8NF67 263 aa11.66□□□□□ -0.54
SMG6-213ENST00000573166 LSG1Q9H089 658 aaKnown RBP11.66□□□□□ -0.54
SMG6-213ENST00000573166 SHPRHQ149N8 1683 aa11.66□□□□□ -0.54
SMG6-213ENST00000573166 TPM2P07951 284 aa11.66□□□□□ -0.54
SMG6-213ENST00000573166 TM6SF1Q9BZW5 370 aa11.66□□□□□ -0.54
SMG6-213ENST00000573166 RBM28Q9NW13 759 aaKnown RBP11.66□□□□□ -0.54
SMG6-213ENST00000573166 CYP21A2P08686 494 aa11.66□□□□□ -0.54
SMG6-213ENST00000573166 CHMP4BP1P59074 171 aa11.66□□□□□ -0.54
SMG6-213ENST00000573166 SMARCC2Q8TAQ2 1214 aa11.66□□□□□ -0.54
SMG6-213ENST00000573166 OLFM4Q6UX06 510 aa11.65□□□□□ -0.54
SMG6-213ENST00000573166 STRBPQ96SI9 672 aaKnown RBP11.65□□□□□ -0.54
SMG6-213ENST00000573166 ABCC12Q96J65 1359 aa11.65□□□□□ -0.54
SMG6-213ENST00000573166 MYCNP04198 464 aaPredicted RBP11.65□□□□□ -0.54
SMG6-213ENST00000573166 ARID4AP29374 1257 aaPredicted RBP11.65□□□□□ -0.54
SMG6-213ENST00000573166 TGFB2P61812 414 aa11.65□□□□□ -0.54
SMG6-213ENST00000573166 RAB34Q9BZG1 259 aa11.65□□□□□ -0.54
SMG6-213ENST00000573166 C6orf50Q9HD87 102 aa11.65□□□□□ -0.54
SMG6-213ENST00000573166 BMP2KQ9NSY1 1161 aaPredicted RBP11.65□□□□□ -0.54
SMG6-213ENST00000573166 DISP2A7MBM2 1401 aa11.65□□□□□ -0.54
SMG6-213ENST00000573166 ATRNO75882 1429 aa11.65□□□□□ -0.54
SMG6-213ENST00000573166 ABCC6O95255 1503 aa11.65□□□□□ -0.54
SMG6-213ENST00000573166 CYP2D7A0A087X1C5 515 aa11.65□□□□□ -0.54
SMG6-213ENST00000573166 CALML3P27482 149 aa11.65□□□□□ -0.54
SMG6-213ENST00000573166 SUPT20HL1Q3ZLR7 823 aa11.65□□□□□ -0.54
SMG6-213ENST00000573166 V9GY48 417 aaPredicted RBP11.65□□□□□ -0.54
SMG6-213ENST00000573166 TNKSO95271 1327 aa11.65□□□□□ -0.54
SMG6-213ENST00000573166 MCM4P33991 863 aa11.65□□□□□ -0.55
SMG6-213ENST00000573166 TMEM132AQ24JP5 1023 aa11.65□□□□□ -0.55
SMG6-213ENST00000573166 TMEM266Q2M3C6 531 aa11.65□□□□□ -0.55
SMG6-213ENST00000573166 RASEFQ8IZ41 740 aa11.65□□□□□ -0.55
SMG6-213ENST00000573166 NOC3LQ8WTT2 800 aaKnown RBP11.65□□□□□ -0.55
SMG6-213ENST00000573166 DHX36Q9H2U1 1008 aaKnown RBP11.65□□□□□ -0.55
SMG6-213ENST00000573166 BCL2L12Q9HB09 334 aa11.65□□□□□ -0.55
SMG6-213ENST00000573166 GDPD2Q9HCC8 539 aa11.65□□□□□ -0.55
SMG6-213ENST00000573166 LTBP4Q8N2S1 1624 aa11.64□□□□□ -0.55
SMG6-213ENST00000573166 RGS12O14924 1447 aa11.64□□□□□ -0.55
SMG6-213ENST00000573166 GRIN3BO60391 1043 aa11.64□□□□□ -0.55
SMG6-213ENST00000573166 CASP7P55210 303 aa11.64□□□□□ -0.55
SMG6-213ENST00000573166 ICA1Q05084 483 aa11.64□□□□□ -0.55
SMG6-213ENST00000573166 ABCB5Q2M3G0 1257 aa11.64□□□□□ -0.55
SMG6-213ENST00000573166 CCDC17Q96LX7 622 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms