RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 TRIM28Q13263 835 aaKnown RBP12.33□□□□□ -0.44
CCDC40-207ENST00000572253 TOM1L2Q6ZVM7 507 aa12.33□□□□□ -0.44
CCDC40-207ENST00000572253 MAP3K14Q99558 947 aa12.33□□□□□ -0.44
CCDC40-207ENST00000572253 PLA2G12BQ9BX93 195 aa12.33□□□□□ -0.44
CCDC40-207ENST00000572253 ANKRD18BA2A2Z9 1011 aa12.33□□□□□ -0.44
CCDC40-207ENST00000572253 UQCRFS1P1P0C7P4 283 aa12.33□□□□□ -0.44
CCDC40-207ENST00000572253 TRIM65Q6PJ69 517 aa12.33□□□□□ -0.44
CCDC40-207ENST00000572253 REXO1L1PQ8IX06 675 aa12.33□□□□□ -0.44
CCDC40-207ENST00000572253 FAM89AQ96GI7 184 aa12.33□□□□□ -0.44
CCDC40-207ENST00000572253 HSD3B7Q9H2F3 369 aa12.33□□□□□ -0.44
CCDC40-207ENST00000572253 FHOD1Q9Y613 1164 aa12.33□□□□□ -0.44
CCDC40-207ENST00000572253 STK36Q9NRP7 1315 aa12.32□□□□□ -0.44
CCDC40-207ENST00000572253 TMEM232C9JQI7 657 aa12.32□□□□□ -0.44
CCDC40-207ENST00000572253 POSTNQ15063 836 aa12.32□□□□□ -0.44
CCDC40-207ENST00000572253 SPECC1LQ69YQ0 1117 aa12.32□□□□□ -0.44
CCDC40-207ENST00000572253 NOSTRINQ8IVI9 506 aa12.32□□□□□ -0.44
CCDC40-207ENST00000572253 LRRN4CLQ8ND94 238 aa12.32□□□□□ -0.44
CCDC40-207ENST00000572253 NAPBQ9H115 298 aa12.32□□□□□ -0.44
CCDC40-207ENST00000572253 CNNM2Q9H8M5 875 aa12.32□□□□□ -0.44
CCDC40-207ENST00000572253 CDC27P30260 824 aa12.32□□□□□ -0.44
CCDC40-207ENST00000572253 MCAMP43121 646 aa12.32□□□□□ -0.44
CCDC40-207ENST00000572253 NUTM2AQ8IVF1 878 aaPredicted RBP12.32□□□□□ -0.44
CCDC40-207ENST00000572253 ZBTB38Q8NAP3 1195 aaPredicted RBP12.32□□□□□ -0.44
CCDC40-207ENST00000572253 NFE2L3Q9Y4A8 694 aa12.32□□□□□ -0.44
CCDC40-207ENST00000572253 ERICH2A1L162 156 aa12.32□□□□□ -0.44
CCDC40-207ENST00000572253 GPS2Q13227 327 aa12.32□□□□□ -0.44
CCDC40-207ENST00000572253 RILPL1Q5EBL4 403 aa12.32□□□□□ -0.44
CCDC40-207ENST00000572253 SGMS1Q86VZ5 419 aa12.32□□□□□ -0.44
CCDC40-207ENST00000572253 GPR161Q8N6U8 529 aaKnown RBP12.32□□□□□ -0.44
CCDC40-207ENST00000572253 TRIML1Q8N9V2 468 aa12.32□□□□□ -0.44
CCDC40-207ENST00000572253 TEX13AQ9BXU3 409 aaPredicted RBP12.32□□□□□ -0.44
CCDC40-207ENST00000572253 TOMM22Q9NS69 142 aa12.32□□□□□ -0.44
CCDC40-207ENST00000572253 ZNF532Q9HCE3 1301 aa12.32□□□□□ -0.44
CCDC40-207ENST00000572253 ZNF512BQ96KM6 892 aaPredicted RBP12.31□□□□□ -0.44
CCDC40-207ENST00000572253 KRT23Q9C075 422 aa12.31□□□□□ -0.44
CCDC40-207ENST00000572253 MAP3K15Q6ZN16 1313 aa12.31□□□□□ -0.44
CCDC40-207ENST00000572253 CSF1RP07333 972 aa12.31□□□□□ -0.44
CCDC40-207ENST00000572253 LIFRP42702 1097 aa12.31□□□□□ -0.44
CCDC40-207ENST00000572253 PPP2R3AQ06190 1150 aa12.31□□□□□ -0.44
CCDC40-207ENST00000572253 GOLGA8FQ08AF8 430 aa12.31□□□□□ -0.44
CCDC40-207ENST00000572253 GOLGA8DPQ0D2H9 430 aa12.31□□□□□ -0.44
CCDC40-207ENST00000572253 ENOX1Q8TC92 643 aaKnown RBP12.31□□□□□ -0.44
CCDC40-207ENST00000572253 DDX17Q92841 729 aaKnown RBP12.31□□□□□ -0.44
CCDC40-207ENST00000572253 MAN1B1Q9UKM7 699 aa12.31□□□□□ -0.44
CCDC40-207ENST00000572253 PARP3Q9Y6F1 533 aa12.31□□□□□ -0.44
CCDC40-207ENST00000572253 CCDC196A0A1B0GTZ2 297 aa12.31□□□□□ -0.44
CCDC40-207ENST00000572253 FMNL1O95466 1100 aaPredicted RBP12.31□□□□□ -0.44
CCDC40-207ENST00000572253 PDE6AP16499 860 aa12.31□□□□□ -0.44
CCDC40-207ENST00000572253 JAKMIP3Q5VZ66 844 aa12.31□□□□□ -0.44
CCDC40-207ENST00000572253 ST7Q9NRC1 585 aa12.31□□□□□ -0.44
CCDC40-207ENST00000572253 VWA3AA6NCI4 1184 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 ITGA6P23229 1130 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 ALX1Q15699 326 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 PPFIBP1Q86W92 1011 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 DIS3L2Q8IYB7 885 aaKnown RBP12.3□□□□□ -0.44
CCDC40-207ENST00000572253 LY9Q9HBG7 655 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 UBN2Q6ZU65 1347 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 RTN1Q16799 776 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 HSP90AA4PQ58FG1 418 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 MYL10Q9BUA6 226 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 NACAP1Q9BZK3 213 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 ARFGAP3Q9NP61 516 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 RAI14Q9P0K7 980 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 ZNF142P52746 1687 aaPredicted RBP12.3□□□□□ -0.44
CCDC40-207ENST00000572253 ALS2Q96Q42 1657 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 POLR2DO15514 142 aaKnown RBP12.3□□□□□ -0.44
CCDC40-207ENST00000572253 IFNAR1P17181 557 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 MAP3K12Q12852 859 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 IGDCC4Q8TDY8 1250 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 GOLGA1Q92805 767 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 NBPF3Q9H094 633 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 PIH1D3Q9NQM4 214 aaKnown RBP12.3□□□□□ -0.44
CCDC40-207ENST00000572253 PRDM11Q9NQV5 511 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 RIPOR2Q9Y4F9 1068 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 PKD1L3Q7Z443 1732 aa12.3□□□□□ -0.44
CCDC40-207ENST00000572253 TNS3Q68CZ2 1445 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 ZRANB2O95218 330 aaKnown RBP eCLIP12.29□□□□□ -0.44
CCDC40-207ENST00000572253 CCDC175P0C221 793 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 PTPREP23469 700 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 AKAP17AQ02040 695 aaKnown RBP12.29□□□□□ -0.44
CCDC40-207ENST00000572253 NTRK3Q16288 839 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 SPECC1Q5M775 1068 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 MFSD6Q6ZSS7 791 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 POLR3GO15318 223 aaPredicted RBP12.29□□□□□ -0.44
CCDC40-207ENST00000572253 RANBP6O60518 1105 aaKnown RBP12.29□□□□□ -0.44
CCDC40-207ENST00000572253 STARD3NLO95772 234 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 TBX2Q13207 712 aaPredicted RBP12.29□□□□□ -0.44
CCDC40-207ENST00000572253 FILIP1LQ4L180 1135 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 CCDC12Q8WUD4 166 aaPredicted RBP12.29□□□□□ -0.44
CCDC40-207ENST00000572253 FOXP1Q9H334 677 aaPredicted RBP12.29□□□□□ -0.44
CCDC40-207ENST00000572253 TMOD3Q9NYL9 352 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 SERTAD1Q9UHV2 236 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 DENND2AQ9ULE3 1009 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 TJP1Q07157 1748 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 NWD2Q9ULI1 1742 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 ATRNO75882 1429 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 BTBD18B2RXH4 712 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 PATL2C9JE40 543 aaKnown RBP12.29□□□□□ -0.44
CCDC40-207ENST00000572253 MMP1P03956 469 aa12.29□□□□□ -0.44
CCDC40-207ENST00000572253 XBP1P17861 261 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms