RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 DDTLA6NHG4 134 aaPredicted RBP23.93■■□□□ 1.42
NUP88-203ENST00000572019 CXCL11O14625 94 aa23.93■■□□□ 1.42
NUP88-203ENST00000572019 PTPRAP18433 802 aa23.93■■□□□ 1.42
NUP88-203ENST00000572019 HOXD10P28358 340 aa23.93■■□□□ 1.42
NUP88-203ENST00000572019 PRRT2Q7Z6L0 340 aaPredicted RBP23.93■■□□□ 1.42
NUP88-203ENST00000572019 SCYL3Q8IZE3 742 aa23.93■■□□□ 1.42
NUP88-203ENST00000572019 GAKO14976 1311 aa23.92■■□□□ 1.42
NUP88-203ENST00000572019 ATAD5Q96QE3 1844 aa23.92■■□□□ 1.42
NUP88-203ENST00000572019 CIAO1O76071 339 aa23.92■■□□□ 1.42
NUP88-203ENST00000572019 ELNP15502 786 aa23.92■■□□□ 1.42
NUP88-203ENST00000572019 FCGRTP55899 365 aa23.92■■□□□ 1.42
NUP88-203ENST00000572019 SLFN5Q08AF3 891 aa23.92■■□□□ 1.42
NUP88-203ENST00000572019 CEP126Q9P2H0 1117 aa23.92■■□□□ 1.42
NUP88-203ENST00000572019 AFG3L2Q9Y4W6 797 aa23.92■■□□□ 1.42
NUP88-203ENST00000572019 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.92■■□□□ 1.42
NUP88-203ENST00000572019 CCDC102BQ68D86 513 aa23.91■■□□□ 1.42
NUP88-203ENST00000572019 IDI2Q9BXS1 227 aa23.91■■□□□ 1.42
NUP88-203ENST00000572019 PRO3102Q9H379 93 aa23.91■■□□□ 1.42
NUP88-203ENST00000572019 BIN2Q9UBW5 565 aaPredicted RBP23.91■■□□□ 1.42
NUP88-203ENST00000572019 LRRFIP2Q9Y608 721 aaKnown RBP23.91■■□□□ 1.42
NUP88-203ENST00000572019 E9PSI1 815 aa23.9■■□□□ 1.42
NUP88-203ENST00000572019 RASGRF1Q13972 1273 aa23.9■■□□□ 1.42
NUP88-203ENST00000572019 GADL1Q6ZQY3 521 aa23.9■■□□□ 1.42
NUP88-203ENST00000572019 ZNF384Q8TF68 577 aa23.9■■□□□ 1.42
NUP88-203ENST00000572019 U2AF1L4Q8WU68 220 aaKnown RBP23.9■■□□□ 1.42
NUP88-203ENST00000572019 DENND2AQ9ULE3 1009 aa23.9■■□□□ 1.42
NUP88-203ENST00000572019 ZNF316A6NFI3 1004 aaPredicted RBP23.89■■□□□ 1.41
NUP88-203ENST00000572019 UBTFL1P0CB47 393 aaPredicted RBP23.89■■□□□ 1.41
NUP88-203ENST00000572019 FLT3LGP49771 235 aa23.89■■□□□ 1.41
NUP88-203ENST00000572019 MAP3K10Q02779 954 aa23.89■■□□□ 1.41
NUP88-203ENST00000572019 SMC4Q9NTJ3 1288 aa23.89■■□□□ 1.41
NUP88-203ENST00000572019 GNL3LQ9NVN8 582 aaKnown RBP23.89■■□□□ 1.41
NUP88-203ENST00000572019 FAM196BA6NMK8 535 aa23.88■■□□□ 1.41
NUP88-203ENST00000572019 ADCY3O60266 1144 aa23.88■■□□□ 1.41
NUP88-203ENST00000572019 ENTPD3O75355 529 aa23.88■■□□□ 1.41
NUP88-203ENST00000572019 TIMM10P62072 90 aa23.88■■□□□ 1.41
NUP88-203ENST00000572019 PICALMQ13492 652 aa23.88■■□□□ 1.41
NUP88-203ENST00000572019 NKX2-3Q8TAU0 364 aa23.88■■□□□ 1.41
NUP88-203ENST00000572019 PICK1Q9NRD5 415 aa23.88■■□□□ 1.41
NUP88-203ENST00000572019 LOC285556D6RIA3 1793 aa23.88■■□□□ 1.41
NUP88-203ENST00000572019 TRIM75PA6NK02 468 aa23.87■■□□□ 1.41
NUP88-203ENST00000572019 FARP2O94887 1054 aaPredicted RBP23.87■■□□□ 1.41
NUP88-203ENST00000572019 ZSCAN29Q8IWY8 852 aaPredicted RBP23.87■■□□□ 1.41
NUP88-203ENST00000572019 SLAIN1Q8ND83 568 aa23.87■■□□□ 1.41
NUP88-203ENST00000572019 MEIS3Q99687 375 aa23.87■■□□□ 1.41
NUP88-203ENST00000572019 FBXO3Q9UK99 471 aa23.87■■□□□ 1.41
NUP88-203ENST00000572019 SEMA3EO15041 775 aa23.86■■□□□ 1.41
NUP88-203ENST00000572019 INHAP05111 366 aa23.86■■□□□ 1.41
NUP88-203ENST00000572019 IL15P40933 162 aaPredicted RBP23.86■■□□□ 1.41
NUP88-203ENST00000572019 BTDP43251 543 aa23.86■■□□□ 1.41
NUP88-203ENST00000572019 UBXN2AP68543 259 aa23.86■■□□□ 1.41
NUP88-203ENST00000572019 ALDH1L2Q3SY69 923 aa23.86■■□□□ 1.41
NUP88-203ENST00000572019 TREML2Q5T2D2 321 aa23.86■■□□□ 1.41
NUP88-203ENST00000572019 FASTKD5Q7L8L6 764 aaKnown RBP23.86■■□□□ 1.41
NUP88-203ENST00000572019 ABCF2Q9UG63 623 aa23.86■■□□□ 1.41
NUP88-203ENST00000572019 NOB1Q9ULX3 412 aaKnown RBP23.86■■□□□ 1.41
NUP88-203ENST00000572019 SIPA1L1O43166 1804 aa23.86■■□□□ 1.41
NUP88-203ENST00000572019 PLXNB2O15031 1838 aa23.85■■□□□ 1.41
NUP88-203ENST00000572019 ZBTB7BO15156 539 aaPredicted RBP23.85■■□□□ 1.41
NUP88-203ENST00000572019 SGPL1O95470 568 aa23.85■■□□□ 1.41
NUP88-203ENST00000572019 RHBDL3P58872 404 aa23.85■■□□□ 1.41
NUP88-203ENST00000572019 DZIP1Q86YF9 867 aaKnown RBP23.85■■□□□ 1.41
NUP88-203ENST00000572019 COPRSQ9NQ92 184 aa23.85■■□□□ 1.41
NUP88-203ENST00000572019 PI16Q6UXB8 463 aa23.84■■□□□ 1.41
NUP88-203ENST00000572019 ANKRD13CQ8N6S4 541 aa23.84■■□□□ 1.41
NUP88-203ENST00000572019 LAMA3Q16787 3333 aa23.83■■□□□ 1.41
NUP88-203ENST00000572019 TNPO2O14787 897 aaKnown RBP23.83■■□□□ 1.41
NUP88-203ENST00000572019 CTNND1O60716 968 aaKnown RBP23.83■■□□□ 1.41
NUP88-203ENST00000572019 RRP1BQ14684 758 aaKnown RBP23.83■■□□□ 1.41
NUP88-203ENST00000572019 FAM163AQ96GL9 167 aaPredicted RBP23.83■■□□□ 1.41
NUP88-203ENST00000572019 DEFB118Q96PH6 123 aa23.83■■□□□ 1.41
NUP88-203ENST00000572019 HTATIP2Q9BUP3 242 aa23.83■■□□□ 1.41
NUP88-203ENST00000572019 SLC45A1Q9Y2W3 748 aa23.83■■□□□ 1.41
NUP88-203ENST00000572019 MROH7-TTC4A0A0A0MT08 1334 aa23.83■■□□□ 1.4
NUP88-203ENST00000572019 CDK5RAP2Q96SN8 1893 aa23.82■■□□□ 1.4
NUP88-203ENST00000572019 ZBTB22O15209 634 aa23.82■■□□□ 1.4
NUP88-203ENST00000572019 MECOMQ03112 1051 aa23.82■■□□□ 1.4
NUP88-203ENST00000572019 TRMT2AQ8IZ69 625 aaKnown RBP23.82■■□□□ 1.4
NUP88-203ENST00000572019 SMCR8Q8TEV9 937 aaPredicted RBP23.82■■□□□ 1.4
NUP88-203ENST00000572019 XAGE2Q96GT9 111 aa23.82■■□□□ 1.4
NUP88-203ENST00000572019 AGTPBP1Q9UPW5 1226 aa23.82■■□□□ 1.4
NUP88-203ENST00000572019 MYO5AQ9Y4I1 1855 aaKnown RBP23.81■■□□□ 1.4
NUP88-203ENST00000572019 A0A1B0GUL7 405 aa23.81■■□□□ 1.4
NUP88-203ENST00000572019 SOX1O00570 391 aaPredicted RBP23.81■■□□□ 1.4
NUP88-203ENST00000572019 TFCP2Q12800 502 aa23.81■■□□□ 1.4
NUP88-203ENST00000572019 ZGPATQ8N5A5 531 aaKnown RBP23.81■■□□□ 1.4
NUP88-203ENST00000572019 DIS3LQ8TF46 1054 aaKnown RBP23.81■■□□□ 1.4
NUP88-203ENST00000572019 PAK6Q9NQU5 681 aaPredicted RBP23.81■■□□□ 1.4
NUP88-203ENST00000572019 TAOK2Q9UL54 1235 aa23.81■■□□□ 1.4
NUP88-203ENST00000572019 GPR75-ASB3A0A0A6YYF3 556 aa23.8■■□□□ 1.4
NUP88-203ENST00000572019 IRF5Q13568 498 aa23.8■■□□□ 1.4
NUP88-203ENST00000572019 TBC1D9Q6ZT07 1266 aa23.8■■□□□ 1.4
NUP88-203ENST00000572019 PXYLP1Q8TE99 480 aa23.8■■□□□ 1.4
NUP88-203ENST00000572019 PDS5AQ29RF7 1337 aaKnown RBP23.8■■□□□ 1.4
NUP88-203ENST00000572019 PEX10O60683 326 aa23.78■■□□□ 1.4
NUP88-203ENST00000572019 TFRCP02786 760 aaKnown RBP23.78■■□□□ 1.4
NUP88-203ENST00000572019 TRIM32Q13049 653 aa23.78■■□□□ 1.4
NUP88-203ENST00000572019 SPP2Q13103 211 aa23.78■■□□□ 1.4
NUP88-203ENST00000572019 CRISPLD2Q9H0B8 497 aa23.78■■□□□ 1.4
NUP88-203ENST00000572019 HMG20BQ9P0W2 317 aa23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms